Wall clock time and date at job start Fri Apr 10 2020 17:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46950 * 111.00049 * 2 1 4 4 C 1.53052 * 109.36525 * 183.18685 * 3 2 1 5 5 N 1.46958 * 109.36804 * 301.60456 * 4 3 2 6 6 C 1.46899 * 111.00222 * 183.18752 * 5 4 3 7 7 C 1.46960 * 110.87884 * 59.31590 * 5 4 3 8 8 H 1.09000 * 109.50463 * 60.65893 * 7 5 4 9 9 C 1.52999 * 109.48573 * 180.71216 * 7 5 4 10 10 N 1.46504 * 109.46962 * 54.42095 * 9 7 5 11 11 C 1.34784 * 119.99823 * 174.86834 * 10 9 7 12 12 O 1.21280 * 119.99828 * 359.72983 * 11 10 9 13 13 C 1.50696 * 119.99630 * 179.72349 * 11 10 9 14 14 C 1.53003 * 109.47007 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47407 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47123 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47249 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99778 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00090 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00144 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47558 * 89.99671 * 21 19 17 23 23 H 1.48508 * 109.47119 * 209.99846 * 21 19 17 24 24 H 1.48508 * 109.47094 * 329.99700 * 21 19 17 25 25 C 1.46958 * 111.00222 * 123.80467 * 2 1 3 26 26 H 1.08996 * 109.47028 * 296.19286 * 1 2 3 27 27 H 1.09001 * 109.47188 * 56.19938 * 1 2 3 28 28 H 1.09007 * 109.47185 * 176.19639 * 1 2 3 29 29 H 1.08995 * 109.49391 * 303.15731 * 3 2 1 30 30 H 1.09003 * 109.48472 * 63.20327 * 3 2 1 31 31 H 1.09004 * 109.48539 * 61.57309 * 4 3 2 32 32 H 1.08999 * 109.49125 * 181.63296 * 4 3 2 33 33 H 1.08997 * 109.46798 * 290.15510 * 6 5 4 34 34 H 1.09004 * 109.46783 * 50.15436 * 6 5 4 35 35 H 1.08997 * 109.46983 * 170.15616 * 6 5 4 36 36 H 1.08997 * 109.47339 * 294.42101 * 9 7 5 37 37 H 1.09004 * 109.47108 * 174.41688 * 9 7 5 38 38 H 0.97000 * 120.00158 * 354.59822 * 10 9 7 39 39 H 1.08992 * 109.47416 * 300.00083 * 13 11 10 40 40 H 1.08995 * 109.47243 * 60.00658 * 13 11 10 41 41 H 1.09006 * 109.47088 * 300.00214 * 14 13 11 42 42 H 1.09001 * 109.47114 * 59.99822 * 14 13 11 43 43 H 1.08991 * 109.46731 * 300.00110 * 15 14 13 44 44 H 1.09001 * 109.46396 * 60.00411 * 15 14 13 45 45 H 1.09006 * 109.47239 * 300.00138 * 16 15 14 46 46 H 1.09001 * 109.47247 * 59.99919 * 16 15 14 47 47 H 0.96997 * 119.99868 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.48959 * 56.83986 * 25 2 1 49 49 H 1.08996 * 109.50457 * 296.79022 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3290 -0.0803 5 7 4.0501 0.5657 1.0597 6 6 5.5191 0.5657 1.0597 7 6 3.5234 -0.8062 1.0596 8 1 3.8253 -1.3119 0.1424 9 6 4.0770 -1.5655 2.2671 10 7 3.7842 -0.8161 3.4914 11 6 4.0871 -1.3446 4.6937 12 8 4.5977 -2.4425 4.7622 13 6 3.7916 -0.5710 5.9528 14 6 4.2299 -1.3895 7.1689 15 6 3.9304 -0.6039 8.4472 16 6 4.3682 -1.4226 9.6633 17 6 4.0727 -0.6491 10.9225 18 1 3.6185 0.3288 10.8614 19 6 4.3831 -1.1895 12.1524 20 7 4.9366 -2.3801 12.2267 21 14 4.0174 -0.2304 13.7130 22 1 2.6507 -0.5625 14.1895 23 1 5.0077 -0.5912 14.7593 24 1 4.1032 1.2252 13.4311 25 6 1.9957 -0.7633 1.1400 26 1 -0.3633 0.4536 0.9221 27 1 -0.3633 0.5717 -0.8540 28 1 -0.3634 -1.0255 -0.0682 29 1 1.6013 1.9129 -0.8602 30 1 1.6934 1.8774 0.9173 31 1 3.8253 0.8479 -1.0107 32 1 3.9178 2.3448 -0.0512 33 1 5.8824 -0.0389 0.2288 34 1 5.8824 1.5877 0.9516 35 1 5.8824 0.1484 1.9988 36 1 5.1557 -1.6805 2.1607 37 1 3.6105 -2.5491 2.3228 38 1 3.3758 0.0620 3.4366 39 1 4.3359 0.3731 5.9354 40 1 2.7216 -0.3725 6.0145 41 1 3.6859 -2.3339 7.1865 42 1 5.3000 -1.5877 7.1070 43 1 4.4748 0.3402 8.4293 44 1 2.8605 -0.4054 8.5093 45 1 3.8235 -2.3667 9.6810 46 1 5.4381 -1.6216 9.6014 47 1 5.1547 -2.7604 13.0920 48 1 1.6013 -1.7790 1.1109 49 1 1.6938 -0.2826 2.0705 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588360272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:10 Heat of formation + Delta-G solvation = -45.566315 kcal Electronic energy + Delta-G solvation = -24203.342410 eV Core-core repulsion = 20778.568861 eV Total energy + Delta-G solvation = -3424.773549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37008 -39.17631 -36.23856 -34.95363 -34.50403 -32.59769 -31.62639 -29.81159 -29.56338 -26.98966 -25.75889 -25.25375 -23.68989 -22.54757 -21.85791 -20.36382 -19.89996 -19.76295 -16.92080 -16.59778 -16.32421 -16.13126 -15.85077 -15.47727 -15.21621 -14.97462 -14.84667 -14.42653 -14.32247 -14.14451 -13.50515 -13.15409 -12.94599 -12.65004 -12.59439 -12.54489 -12.27625 -12.01685 -11.87226 -11.76088 -11.62433 -11.51898 -11.25368 -11.03596 -10.94796 -10.49133 -10.46466 -10.35763 -9.73450 -9.56456 -9.17723 -9.07984 -8.94621 -8.87954 -8.75089 -8.27502 -5.92301 -3.94636 2.83455 3.16813 3.35955 3.41819 3.41901 3.45145 3.49560 4.28560 4.39125 4.51470 4.54087 4.74593 4.80358 4.87030 5.00961 5.03124 5.06538 5.11518 5.16239 5.26181 5.30688 5.40201 5.40460 5.42674 5.44887 5.45778 5.47732 5.53513 5.59645 5.64990 5.95045 6.20398 6.36056 6.37533 6.43112 6.48411 6.60360 6.63021 6.66228 6.89971 7.08103 7.25036 7.60135 7.77735 7.94349 8.09632 8.38746 8.51493 9.13175 9.68787 11.19064 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.002211 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.529667 B =12662.696401 C =12929.404347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.054 3.946 4 C 0.057 3.943 5 N -0.540 5.540 6 C 0.021 3.979 7 C 0.075 3.925 8 H 0.065 0.935 9 C 0.127 3.873 10 N -0.727 5.727 11 C 0.510 3.490 12 O -0.540 6.540 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.061 3.939 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.406 0.594 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.082 0.918 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 8.032 -30.363 31.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.071 4.071 5 N -0.265 5.265 6 C -0.126 4.126 7 C -0.034 4.034 8 H 0.083 0.917 9 C 0.001 3.999 10 N -0.381 5.381 11 C 0.297 3.703 12 O -0.417 6.417 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.067 4.067 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.241 0.759 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.100 0.900 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.427 7.103 -30.199 31.495 hybrid contribution -0.371 0.913 0.793 1.265 sum -5.798 8.016 -29.407 31.026 Atomic orbital electron populations 1.22353 0.86795 1.02477 1.00714 1.62150 1.08146 1.13908 1.42882 1.22199 0.94494 0.89420 1.01288 1.22176 0.94373 0.98564 0.91970 1.62111 1.08370 1.13114 1.42902 1.22428 0.86604 1.02014 1.01597 1.21989 0.94599 0.89202 0.97646 0.91726 1.21307 1.00496 0.95037 0.83019 1.45990 1.64890 1.22210 1.05054 1.21087 0.77419 0.86693 0.85067 1.90700 1.42757 1.20916 1.87313 1.21764 1.03190 1.00146 0.92662 1.21441 1.01784 0.98514 0.92319 1.21646 0.99892 0.98715 0.94523 1.19098 0.96671 0.95117 0.90864 1.21290 1.40095 1.03083 0.91295 0.92777 1.25044 0.95378 0.95027 0.99170 1.69975 1.42792 1.16100 1.24629 0.86614 0.77988 0.80284 0.83203 1.20727 1.21272 1.19934 1.22208 0.93429 0.98974 0.92138 0.95316 0.91288 0.91192 0.90221 0.93736 0.93891 0.89973 0.95346 0.91227 0.90619 0.91503 0.90747 0.75877 0.89250 0.89367 0.91881 0.91874 0.93511 0.93542 0.96613 0.96597 0.93070 0.89955 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.60 60.06 0.58 0.72 16 2 N -0.55 -3.89 4.97 -242.76 -1.21 -5.10 16 3 C 0.05 0.34 5.62 -3.77 -0.02 0.32 16 4 C 0.06 0.36 5.61 -3.77 -0.02 0.33 16 5 N -0.54 -3.86 4.12 -234.73 -0.97 -4.83 16 6 C 0.02 0.15 8.99 60.06 0.54 0.69 16 7 C 0.07 0.56 2.21 -67.66 -0.15 0.41 16 8 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 9 C 0.13 1.19 4.64 -4.04 -0.02 1.17 16 10 N -0.73 -7.55 5.06 -60.29 -0.31 -7.85 16 11 C 0.51 7.24 7.83 -10.98 -0.09 7.15 16 12 O -0.54 -9.99 15.98 5.56 0.09 -9.90 16 13 C -0.14 -1.90 5.70 -27.88 -0.16 -2.06 16 14 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 15 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 18 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.82 13.29 55.43 0.74 -27.08 16 21 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 25 C 0.06 0.45 4.80 -3.77 -0.02 0.44 16 26 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.03 0.19 8.12 -51.93 -0.42 -0.24 16 34 H 0.07 0.42 8.03 -51.93 -0.42 0.00 16 35 H 0.08 0.61 6.74 -51.93 -0.35 0.26 16 36 H 0.07 0.67 6.83 -51.93 -0.35 0.32 16 37 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 38 H 0.41 3.61 7.43 -40.82 -0.30 3.31 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.38 7.30 -51.93 -0.38 0.01 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -33.60 385.34 -10.40 -44.00 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -9.37 Total: -3.28 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -0.16 Total: -8.86 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -1.74 Total: -44.86 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.60 -10.40 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588360272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.567 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds