Wall clock time and date at job start Fri Apr 10 2020 17:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 119.99693 * 2 1 4 4 O 1.21584 * 120.00020 * 5.06787 * 3 2 1 5 5 N 1.34782 * 119.99700 * 185.06223 * 3 2 1 6 6 C 1.46962 * 120.59194 * 174.93426 * 5 3 2 7 7 C 1.53370 * 108.63495 * 235.24908 * 6 5 3 8 8 N 1.46969 * 108.63429 * 310.57732 * 7 6 5 9 9 C 1.34775 * 120.59123 * 235.19942 * 8 7 6 10 10 O 1.21280 * 120.00013 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99653 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.46691 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46705 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46960 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47199 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00046 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99985 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00419 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99848 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46622 * 60.00275 * 19 17 15 21 21 H 1.48499 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47149 * 300.00498 * 19 17 15 23 23 C 1.46966 * 118.80928 * 55.47863 * 8 7 6 24 24 C 1.46961 * 120.59236 * 354.95778 * 5 3 2 25 25 H 1.08997 * 109.46802 * 299.99271 * 1 2 3 26 26 H 1.08995 * 109.47307 * 59.99554 * 1 2 3 27 27 H 1.08997 * 109.46724 * 179.97438 * 1 2 3 28 28 H 0.97002 * 120.00253 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.60690 * 115.50321 * 6 5 3 30 30 H 1.09001 * 109.75469 * 355.07917 * 6 5 3 31 31 H 1.09001 * 109.61043 * 190.83455 * 7 6 5 32 32 H 1.09001 * 109.74802 * 70.40863 * 7 6 5 33 33 H 1.08993 * 109.46998 * 60.00436 * 11 9 8 34 34 H 1.08998 * 109.46845 * 300.00231 * 11 9 8 35 35 H 1.09003 * 109.47258 * 60.00334 * 12 11 9 36 36 H 1.08998 * 109.46986 * 299.99868 * 12 11 9 37 37 H 1.08998 * 109.47292 * 299.99682 * 13 12 11 38 38 H 1.09003 * 109.46988 * 60.00170 * 13 12 11 39 39 H 1.09007 * 109.47220 * 299.99731 * 14 13 12 40 40 H 1.08994 * 109.47580 * 59.99654 * 14 13 12 41 41 H 0.96997 * 120.00522 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.61191 * 64.26823 * 23 8 7 43 43 H 1.09005 * 109.60459 * 184.77367 * 23 8 7 44 44 H 1.08998 * 109.61123 * 244.48968 * 24 5 3 45 45 H 1.08999 * 109.61344 * 4.83648 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5345 2.2181 0.0930 5 7 3.4828 1.1695 -0.1030 6 6 4.2221 2.4346 -0.2158 7 6 5.0907 2.3837 -1.4788 8 7 5.8429 1.1211 -1.4808 9 6 7.1866 1.1234 -1.5848 10 8 7.7858 2.1737 -1.6774 11 6 7.9445 -0.1793 -1.5861 12 6 9.4429 0.1027 -1.7137 13 6 10.2123 -1.2198 -1.7143 14 6 11.7107 -0.9379 -1.8413 15 6 12.4686 -2.2405 -1.8425 16 1 11.9349 -3.1759 -1.7605 17 6 13.8433 -2.2381 -1.9484 18 7 14.4932 -1.0992 -2.0487 19 14 14.7827 -3.8527 -1.9492 20 1 14.3360 -4.6847 -3.0954 21 1 16.2370 -3.5792 -2.0738 22 1 14.5218 -4.5779 -0.6798 23 6 5.1030 -0.1443 -1.3736 24 6 4.2349 -0.0930 -0.1050 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9501 -0.8400 0.0004 29 1 4.8574 2.5664 0.6600 30 1 3.5208 3.2660 -0.2874 31 1 5.7856 3.2234 -1.4790 32 1 4.4567 2.4333 -2.3641 33 1 7.6163 -0.7897 -2.4273 34 1 7.7533 -0.7117 -0.6544 35 1 9.7707 0.7129 -0.8721 36 1 9.6343 0.6353 -2.6452 37 1 10.0208 -1.7520 -0.7826 38 1 9.8845 -1.8305 -2.5556 39 1 11.9026 -0.4055 -2.7729 40 1 12.0382 -0.3274 -0.9998 41 1 15.4603 -1.0975 -2.1228 42 1 4.4677 -0.2719 -2.2501 43 1 5.8062 -0.9743 -1.3045 44 1 4.8712 -0.1412 0.7787 45 1 3.5400 -0.9328 -0.1017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588630273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:12 Heat of formation + Delta-G solvation = -92.783609 kcal Electronic energy + Delta-G solvation = -23846.520658 eV Core-core repulsion = 20283.866519 eV Total energy + Delta-G solvation = -3562.654139 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.71746 -40.70659 -38.22125 -36.61959 -35.79059 -35.06853 -34.59111 -32.66067 -31.31348 -29.27327 -27.72295 -26.80114 -24.94252 -24.38123 -23.13485 -21.77688 -21.19931 -20.33360 -19.08346 -18.40530 -17.64822 -17.51124 -17.02016 -16.86322 -16.74604 -16.45855 -15.86930 -15.45444 -15.37532 -15.04597 -14.85234 -14.55149 -14.50085 -13.76856 -13.62674 -13.58051 -13.54591 -13.20965 -13.06558 -12.77005 -12.60946 -12.56246 -12.45194 -12.31800 -12.10656 -12.09265 -11.36351 -11.34160 -11.29643 -11.12661 -10.74679 -10.52429 -10.47126 -10.06705 -9.33155 -8.16549 -6.28757 1.41895 1.45866 1.47807 1.53655 1.60495 2.01044 2.07915 2.43591 2.90710 3.16081 3.51768 3.76325 3.86398 4.04768 4.09083 4.13609 4.16212 4.30757 4.42215 4.48642 4.56029 4.64661 4.68419 4.71083 4.74290 4.77593 4.85229 4.90471 4.95235 4.99357 5.21598 5.32429 5.36398 5.40226 5.45326 5.47315 5.59540 5.81173 5.85141 5.90695 6.27117 6.32879 6.90000 6.90076 7.15525 7.40856 7.48594 8.95365 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.002252 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.287218 B =12429.486873 C =13092.771741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.737 5.737 3 C 0.700 3.300 4 O -0.637 6.637 5 N -0.628 5.628 6 C 0.124 3.876 7 C 0.101 3.899 8 N -0.614 5.614 9 C 0.512 3.488 10 O -0.587 6.587 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.094 4.094 14 C 0.017 3.983 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.263 1.263 23 C 0.087 3.913 24 C 0.095 3.905 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.413 0.587 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.062 0.938 39 H -0.018 1.018 40 H -0.017 1.017 41 H 0.262 0.738 42 H 0.089 0.911 43 H 0.128 0.872 44 H 0.084 0.916 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.359 -3.824 3.906 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.396 5.396 3 C 0.401 3.599 4 O -0.518 6.518 5 N -0.365 5.365 6 C 0.000 4.000 7 C -0.023 4.023 8 N -0.347 5.347 9 C 0.303 3.697 10 O -0.467 6.467 11 C -0.165 4.165 12 C -0.135 4.135 13 C -0.131 4.131 14 C -0.020 4.020 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.036 4.036 24 C -0.028 4.028 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.252 0.748 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.146 0.854 44 H 0.102 0.898 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -30.360 -2.476 3.898 30.709 hybrid contribution 1.233 -0.238 -0.089 1.259 sum -29.126 -2.715 3.809 29.499 Atomic orbital electron populations 1.21543 0.77308 1.04155 1.01134 1.45023 1.08309 1.06789 1.79438 1.16111 0.81668 0.84576 0.77554 1.90895 1.68477 1.32642 1.59816 1.47239 1.03932 1.08284 1.77074 1.21703 0.94385 0.86582 0.97370 1.21902 0.94622 0.87671 0.98071 1.48164 1.05340 1.08291 1.72921 1.21345 0.82102 0.91952 0.74332 1.90697 1.68886 1.35688 1.51430 1.21716 0.93743 0.94262 1.06745 1.21258 0.94013 0.97421 1.00812 1.21435 0.94289 0.95939 1.01474 1.19071 0.93284 0.95458 0.94193 1.21735 0.92341 0.94039 1.49677 0.91357 1.26115 0.99321 1.00267 0.94903 1.70129 1.08305 1.27969 1.51504 0.85437 0.76831 0.79009 0.79365 1.18862 1.21332 1.18812 1.22574 0.96489 0.85813 0.98674 1.22390 0.95958 0.85682 0.98814 0.93679 0.93506 0.86778 0.74763 0.91229 0.88893 0.89565 0.90609 0.86056 0.85772 0.94048 0.94177 0.91758 0.91881 0.99912 0.99843 0.92937 0.89319 0.85412 0.89754 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 10.71 127.77 1.37 2.20 16 2 N -0.74 -7.18 5.63 -500.19 -2.81 -9.99 16 3 C 0.70 12.74 8.29 179.05 1.49 14.23 16 4 O -0.64 -17.82 15.78 -3.98 -0.06 -17.88 16 5 N -0.63 -9.06 2.95 -835.16 -2.46 -11.52 16 6 C 0.12 2.18 6.58 86.42 0.57 2.75 16 7 C 0.10 1.89 6.59 86.41 0.57 2.46 16 8 N -0.61 -10.88 2.94 -817.13 -2.40 -13.29 16 9 C 0.51 13.05 7.70 87.66 0.67 13.73 16 10 O -0.59 -21.34 15.39 -3.03 -0.05 -21.39 16 11 C -0.13 -2.73 4.04 29.85 0.12 -2.61 16 12 C -0.10 -3.33 4.50 30.60 0.14 -3.19 16 13 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 14 C 0.02 0.92 4.97 29.85 0.15 1.07 16 15 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 16 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 17 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 18 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 19 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 23 C 0.09 0.70 6.54 86.56 0.57 1.27 16 24 C 0.09 0.62 6.61 86.57 0.57 1.19 16 25 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.41 1.03 6.28 -92.71 -0.58 0.45 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.88 7.03 -2.39 -0.02 1.86 16 31 H 0.09 1.99 6.99 -2.39 -0.02 1.97 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.12 1.96 7.90 -2.39 -0.02 1.94 16 34 H 0.12 1.92 7.73 -2.39 -0.02 1.90 16 35 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 36 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.13 0.48 5.91 -2.38 -0.01 0.47 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.12 -0.07 5.55 -2.39 -0.01 -0.08 16 Total: -1.00 -85.99 362.29 1.98 -84.01 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 0.39 Total: 3.31 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 7.06 Total: -0.92 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -7.39 Total: -93.30 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.11 Total: -39.27 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -85.99 1.98 -84.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588630273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.773 kcal (2) G-P(sol) polarization free energy of solvation -85.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds