Wall clock time and date at job start Fri Apr 10 2020 17:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.53000 * 109.47135 * 46.18010 * 6 5 4 8 8 N 1.46498 * 109.47086 * 180.02562 * 7 6 5 9 9 C 1.34779 * 119.99922 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99725 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99900 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.47282 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47451 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47232 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47085 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99769 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00238 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99704 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47105 * 89.99761 * 19 17 15 21 21 H 1.48496 * 109.47179 * 209.99570 * 19 17 15 22 22 H 1.48496 * 109.47356 * 330.00095 * 19 17 15 23 23 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 24 24 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 25 25 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 26 26 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 28 28 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 29 29 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 30 30 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 31 31 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 32 32 H 1.08994 * 109.47069 * 166.17990 * 6 5 4 33 33 H 1.09001 * 109.47054 * 286.17919 * 6 5 4 34 34 H 1.09005 * 109.46953 * 299.99531 * 7 6 5 35 35 H 1.08991 * 109.47188 * 60.00097 * 7 6 5 36 36 H 0.96997 * 120.00114 * 359.97438 * 8 7 6 37 37 H 1.09004 * 109.47270 * 300.00118 * 11 9 8 38 38 H 1.09001 * 109.46939 * 59.99987 * 11 9 8 39 39 H 1.09004 * 109.46871 * 300.00680 * 12 11 9 40 40 H 1.09001 * 109.46883 * 60.00272 * 12 11 9 41 41 H 1.09004 * 109.47067 * 300.00417 * 13 12 11 42 42 H 1.09001 * 109.46973 * 60.00182 * 13 12 11 43 43 H 1.09005 * 109.46953 * 299.99570 * 14 13 12 44 44 H 1.09001 * 109.47223 * 60.00053 * 14 13 12 45 45 H 0.97004 * 119.99990 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.48806 * 180.71933 * 23 5 4 47 47 H 1.09003 * 109.49203 * 60.65575 * 23 5 4 48 48 H 1.09001 * 109.48625 * 296.77747 * 24 2 1 49 49 H 1.09003 * 109.48941 * 56.82355 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.0292 1.9863 0.8095 8 7 7.4941 1.9861 0.8090 9 6 8.1681 3.1357 0.6067 10 8 7.5617 4.1701 0.4247 11 6 9.6751 3.1356 0.6068 12 6 10.1852 4.5561 0.3562 13 6 11.7151 4.5559 0.3556 14 6 12.2252 5.9766 0.1056 15 6 13.7322 5.9763 0.1044 16 1 14.2722 5.0550 0.2662 17 6 14.4216 7.1523 -0.1022 18 7 13.7641 8.2742 -0.2988 19 14 16.2896 7.1520 -0.1030 20 1 16.7840 6.9100 -1.4823 21 1 16.7850 8.4672 0.3766 22 1 16.7849 6.0787 0.7957 23 6 3.5234 -0.8061 1.0599 24 6 1.9956 -0.7632 1.1402 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6014 1.9128 -0.8603 29 1 1.6935 1.8775 0.9171 30 1 3.8258 0.8485 -1.0102 31 1 3.9176 2.3453 -0.0506 32 1 5.8823 0.2143 2.0257 33 1 5.8824 -0.0949 0.2728 34 1 5.6659 2.3377 -0.1563 35 1 5.6659 2.6469 1.5967 36 1 7.9791 1.1589 0.9550 37 1 10.0384 2.7837 1.5724 38 1 10.0384 2.4753 -0.1807 39 1 9.8218 4.9075 -0.6095 40 1 9.8219 5.2167 1.1434 41 1 12.0788 4.2043 1.3211 42 1 12.0781 3.8954 -0.4319 43 1 11.8616 6.3286 -0.8599 44 1 11.8623 6.6368 0.8933 45 1 14.2492 9.1015 -0.4445 46 1 3.9176 -1.3470 1.9202 47 1 3.8253 -1.3116 0.1426 48 1 1.6936 -0.2820 2.0704 49 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588748613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:14 Heat of formation + Delta-G solvation = -72.448619 kcal Electronic energy + Delta-G solvation = -23272.609583 eV Core-core repulsion = 19846.670330 eV Total energy + Delta-G solvation = -3425.939253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.91747 -40.23453 -37.32584 -36.59156 -35.33800 -34.59529 -32.12229 -31.73198 -30.67470 -28.31669 -27.06315 -25.26987 -24.54838 -23.96371 -22.55248 -21.79500 -21.27716 -20.74097 -18.41570 -17.96357 -17.50239 -17.07673 -16.67780 -16.48440 -16.33748 -16.06025 -15.89803 -15.64966 -15.41189 -15.04055 -14.68328 -14.53494 -14.38073 -13.70953 -13.57563 -13.48410 -13.28554 -13.17517 -12.99225 -12.81276 -12.51026 -12.45494 -12.33012 -12.25709 -12.14559 -12.10998 -11.78808 -11.67799 -11.36383 -11.34882 -11.16167 -10.78579 -10.54203 -10.11638 -9.48451 -9.30454 -8.17832 -6.30163 1.41008 1.43360 1.54457 1.65804 2.07711 2.42741 2.93379 2.97995 3.14856 3.70599 3.83266 3.89331 4.00933 4.06235 4.09008 4.17224 4.18821 4.32630 4.37603 4.42980 4.50858 4.59908 4.64623 4.67347 4.70466 4.79977 4.83297 4.86318 4.86571 4.88444 4.93412 4.96284 4.99485 5.04968 5.20882 5.34705 5.35644 5.44211 5.58459 5.79289 5.87028 5.89040 5.89342 6.07613 6.10592 6.26155 6.55912 6.88368 7.28401 7.39531 8.94340 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.056392 B = 0.001699 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.408620 B =16479.145185 C =16845.130594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.058 3.942 4 C 0.050 3.950 5 N -0.546 5.546 6 C 0.056 3.944 7 C 0.119 3.881 8 N -0.717 5.717 9 C 0.511 3.489 10 O -0.590 6.590 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.096 4.096 14 C 0.017 3.983 15 C -0.543 4.543 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C 0.059 3.941 24 C 0.056 3.944 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.025 0.975 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.419 0.581 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.061 0.939 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.262 0.738 46 H 0.097 0.903 47 H 0.042 0.958 48 H 0.036 0.964 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.815 -25.332 3.379 35.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.284 5.284 3 C -0.070 4.070 4 C -0.078 4.078 5 N -0.272 5.272 6 C -0.071 4.071 7 C -0.006 4.006 8 N -0.371 5.371 9 C 0.299 3.701 10 O -0.470 6.470 11 C -0.166 4.166 12 C -0.135 4.135 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.069 4.069 24 C -0.072 4.072 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.256 0.744 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.071 0.929 46 H 0.115 0.885 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.252 -24.452 3.229 35.299 hybrid contribution 0.843 0.578 -0.103 1.027 sum -24.409 -23.875 3.126 34.287 Atomic orbital electron populations 1.22383 0.86078 1.02844 1.00961 1.62209 1.08982 1.13871 1.43300 1.22151 0.94203 0.89577 1.01104 1.22273 0.94785 0.98874 0.91916 1.62190 1.07066 1.14969 1.42969 1.22185 0.87343 0.94510 1.03106 1.21362 0.79874 0.97950 1.01374 1.45784 1.06995 1.10933 1.73379 1.21222 0.91298 0.82909 0.74666 1.90701 1.71581 1.33967 1.50702 1.21668 0.89473 0.98901 1.06596 1.21253 0.95439 0.96033 1.00814 1.21450 0.93456 0.97172 1.01247 1.19074 0.95079 0.93557 0.94286 1.21769 0.93129 0.94604 1.48565 0.91517 1.26094 1.04317 0.95184 0.94788 1.70136 1.37744 0.99667 1.50253 0.85375 0.78751 0.77683 0.78776 1.19721 1.20964 1.18295 1.22220 0.94516 0.88333 1.01834 1.22218 0.94444 0.99097 0.91451 0.90939 0.90283 0.95593 0.89664 0.94653 0.94252 0.90172 0.88322 0.92818 0.92525 0.92496 0.74359 0.86159 0.86206 0.93956 0.93952 0.92004 0.91993 0.99740 0.99717 0.92887 0.88497 0.94019 0.94575 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.60 127.69 1.23 1.48 16 2 N -0.56 -7.52 4.97 -921.91 -4.58 -12.10 16 3 C 0.06 0.84 5.62 86.31 0.49 1.33 16 4 C 0.05 0.77 4.93 86.31 0.43 1.20 16 5 N -0.55 -7.69 4.86 -895.70 -4.35 -12.05 16 6 C 0.06 0.67 5.39 86.30 0.47 1.14 16 7 C 0.12 2.13 4.94 86.38 0.43 2.56 16 8 N -0.72 -12.68 5.56 -463.07 -2.57 -15.25 16 9 C 0.51 13.73 7.83 87.66 0.69 14.42 16 10 O -0.59 -22.30 15.98 -3.02 -0.05 -22.35 16 11 C -0.13 -3.07 5.70 29.85 0.17 -2.90 16 12 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 13 C -0.10 -3.92 5.15 30.59 0.16 -3.77 16 14 C 0.02 0.95 4.97 29.85 0.15 1.10 16 15 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 18 N -0.94 -59.35 13.29 21.45 0.28 -59.07 16 19 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 23 C 0.06 0.65 5.58 86.31 0.48 1.13 16 24 C 0.06 0.63 5.62 86.31 0.49 1.12 16 25 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.08 0.61 8.13 -2.39 -0.02 0.59 16 27 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 1.38 5.99 -2.39 -0.01 1.36 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 34 H 0.06 1.18 6.26 -2.38 -0.01 1.17 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.42 4.16 8.47 -92.71 -0.79 3.37 16 37 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 40 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 46 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.09 0.78 8.13 -2.39 -0.02 0.76 16 Total: -1.00 -77.15 387.51 -3.15 -80.29 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.11 Total: 9.51 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 5.99 Total: -15.98 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -11.22 Total: -98.47 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.15 -3.15 -80.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588748613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.842 kcal (2) G-P(sol) polarization free energy of solvation -77.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds