Wall clock time and date at job start Fri Apr 10 2020 17:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46959 * 110.99810 * 2 1 4 4 C 1.53052 * 109.36312 * 176.81214 * 3 2 1 5 5 N 1.46955 * 109.36551 * 58.40168 * 4 3 2 6 6 C 1.46898 * 111.00097 * 176.81237 * 5 4 3 7 7 C 1.50697 * 109.47113 * 190.16828 * 6 5 4 8 8 O 1.21286 * 120.00157 * 6.28080 * 7 6 5 9 9 N 1.34780 * 119.99916 * 186.27543 * 7 6 5 10 10 C 1.46502 * 120.00044 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47077 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47031 * 299.99578 * 11 10 9 13 13 C 1.52991 * 109.47307 * 60.00077 * 11 10 9 14 14 C 1.53001 * 109.46966 * 180.02562 * 11 10 9 15 15 C 1.50704 * 109.47258 * 179.97438 * 14 11 10 16 16 H 1.07998 * 119.99774 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99792 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00594 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99608 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47446 * 90.00001 * 19 17 15 21 21 H 1.48504 * 109.47112 * 210.00369 * 19 17 15 22 22 H 1.48503 * 109.47278 * 329.99831 * 19 17 15 23 23 C 1.46959 * 110.88019 * 300.67828 * 5 4 3 24 24 C 1.46955 * 111.00097 * 236.20140 * 2 1 3 25 25 H 1.09005 * 109.47176 * 183.80027 * 1 2 3 26 26 H 1.09004 * 109.47452 * 303.79811 * 1 2 3 27 27 H 1.09004 * 109.47330 * 63.80126 * 1 2 3 28 28 H 1.08992 * 109.48955 * 296.78250 * 3 2 1 29 29 H 1.09004 * 109.48524 * 56.84727 * 3 2 1 30 30 H 1.09000 * 109.48967 * 298.43608 * 4 3 2 31 31 H 1.08995 * 109.48821 * 178.37341 * 4 3 2 32 32 H 1.08997 * 109.47187 * 310.17245 * 6 5 4 33 33 H 1.09004 * 109.47060 * 70.17048 * 6 5 4 34 34 H 0.96994 * 119.99772 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.47063 * 300.00547 * 10 9 7 36 36 H 1.09005 * 109.46990 * 59.99804 * 10 9 7 37 37 H 1.08996 * 109.46868 * 60.00841 * 12 11 10 38 38 H 1.09005 * 109.46760 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47166 * 300.00027 * 12 11 10 40 40 H 1.09000 * 109.47396 * 59.99874 * 13 11 10 41 41 H 1.09005 * 109.47385 * 179.97438 * 13 11 10 42 42 H 1.09005 * 109.47205 * 299.99714 * 13 11 10 43 43 H 1.09000 * 109.46946 * 299.99642 * 14 11 10 44 44 H 1.09004 * 109.47644 * 59.99660 * 14 11 10 45 45 H 0.96996 * 120.00425 * 179.97438 * 18 17 15 46 46 H 1.09003 * 109.49159 * 299.35716 * 23 5 4 47 47 H 1.09004 * 109.48999 * 179.28280 * 23 5 4 48 48 H 1.09004 * 109.49115 * 303.15916 * 24 2 1 49 49 H 1.08998 * 109.48826 * 63.19802 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0501 0.5660 -1.0598 6 6 5.5190 0.5660 -1.0598 7 6 6.0214 -0.0035 -2.3614 8 8 5.2392 -0.2670 -3.2502 9 7 7.3399 -0.2201 -2.5380 10 6 7.8283 -0.7732 -3.8037 11 6 9.3500 -0.9195 -3.7428 12 6 9.9852 0.4523 -3.5069 13 6 9.7265 -1.8599 -2.5962 14 6 9.8601 -1.4966 -5.0648 15 6 11.3591 -1.6401 -5.0051 16 1 11.8943 -1.3493 -4.1133 17 6 12.0471 -2.1437 -6.0887 18 7 11.3953 -2.4984 -7.1745 19 14 13.9051 -2.3223 -6.0144 20 1 14.2525 -3.6653 -5.4845 21 1 14.4723 -2.1662 -7.3779 22 1 14.4676 -1.2773 -5.1217 23 6 3.5235 -0.8060 -1.0598 24 6 1.9956 -0.7632 -1.1401 25 1 -0.3634 -1.0254 0.0681 26 1 -0.3634 0.5717 0.8540 27 1 -0.3634 0.4537 -0.9221 28 1 1.6937 1.8774 -0.9172 29 1 1.6012 1.9128 0.8603 30 1 3.8253 0.8479 1.0106 31 1 3.9177 2.3448 0.0513 32 1 5.8824 1.5872 -0.9457 33 1 5.8824 -0.0435 -0.2323 34 1 7.9654 -0.0097 -1.8272 35 1 7.3760 -1.7507 -3.9716 36 1 7.5597 -0.1034 -4.6206 37 1 9.6219 0.8638 -2.5652 38 1 11.0694 0.3481 -3.4640 39 1 9.7170 1.1222 -4.3238 40 1 9.2740 -2.8372 -2.7643 41 1 10.8107 -1.9645 -2.5531 42 1 9.3631 -1.4483 -1.6545 43 1 9.4077 -2.4738 -5.2333 44 1 9.5919 -0.8263 -5.8815 45 1 11.8794 -2.8523 -7.9369 46 1 3.8253 -1.3115 -0.1424 47 1 3.9177 -1.3469 -1.9201 48 1 1.6013 -1.7790 -1.1111 49 1 1.6934 -0.2822 -2.0704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588783774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:18 Heat of formation + Delta-G solvation = -35.686487 kcal Electronic energy + Delta-G solvation = -24687.536748 eV Core-core repulsion = 21263.191621 eV Total energy + Delta-G solvation = -3424.345127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06462 -38.90347 -37.11228 -35.37145 -33.57396 -32.10465 -31.14139 -29.86850 -27.29531 -26.80792 -26.52268 -25.33401 -23.85923 -23.44502 -22.59237 -20.20330 -19.98568 -18.30318 -16.85548 -16.57407 -16.24500 -15.76246 -15.37646 -15.28641 -15.07417 -14.68972 -14.53045 -14.33921 -14.05343 -13.65661 -13.27487 -13.00272 -12.77584 -12.70325 -12.59337 -12.25313 -12.07221 -12.00913 -11.74412 -11.47213 -11.20052 -11.06303 -11.05128 -10.99601 -10.85953 -10.64415 -10.40926 -10.26095 -9.88212 -9.68034 -9.16581 -8.93157 -8.71929 -8.66719 -8.44705 -8.36565 -6.00455 -4.01839 2.84899 3.20025 3.30320 3.37456 3.39147 3.65484 3.87240 4.44568 4.60277 4.74601 4.78736 4.95805 5.05329 5.08112 5.13219 5.23635 5.26622 5.28317 5.34979 5.36862 5.51847 5.53860 5.54861 5.62528 5.64596 5.74242 5.83090 5.86513 6.16158 6.21914 6.28193 6.38977 6.57399 6.60157 6.61933 6.67209 6.77339 6.83346 6.89706 7.05598 7.06701 7.12563 7.63473 7.75822 7.78702 7.98212 8.39593 8.49300 9.02978 9.61280 11.10967 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.044123 B = 0.002428 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.441036 B =11527.545498 C =11797.113490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.057 3.943 4 C 0.057 3.943 5 N -0.522 5.522 6 C 0.037 3.963 7 C 0.506 3.494 8 O -0.528 6.528 9 N -0.724 5.724 10 C 0.130 3.870 11 C -0.072 4.072 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.055 3.945 24 C 0.059 3.941 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.028 0.972 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.260 0.740 46 H 0.037 0.963 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.554 7.098 17.075 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.071 4.071 4 C -0.071 4.071 5 N -0.247 5.247 6 C -0.095 4.095 7 C 0.291 3.709 8 O -0.404 6.404 9 N -0.377 5.377 10 C 0.007 3.993 11 C -0.073 4.073 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.002 4.002 15 C -0.549 4.549 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.073 4.073 24 C -0.069 4.069 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.114 0.886 48 H 0.097 0.903 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.100 6.831 16.234 24.549 hybrid contribution 1.387 -0.034 0.232 1.407 sum -15.713 6.797 16.466 23.754 Atomic orbital electron populations 1.22338 0.87236 1.02238 1.00482 1.62198 1.07835 1.13913 1.43331 1.22146 0.94357 0.89496 1.01081 1.22184 0.94609 0.98510 0.91796 1.61788 1.05527 1.14933 1.42432 1.21965 0.89240 1.02616 0.95647 1.20413 0.82538 0.78701 0.89231 1.90685 1.55247 1.50841 1.43590 1.46209 1.07161 1.65414 1.18879 1.21594 0.95126 0.98261 0.84271 1.20896 0.90820 0.95836 0.99714 1.21761 1.01947 0.95939 0.98782 1.21759 1.02543 0.98632 0.95470 1.19094 0.95917 0.95877 0.89295 1.21179 0.91992 1.41855 0.99900 0.92269 1.25020 0.98148 0.95762 0.95624 1.69959 1.35493 1.43543 1.04364 0.86646 0.86039 0.78370 0.77226 1.20785 1.21347 1.19956 1.22293 0.94305 0.89041 1.01678 1.22146 0.94605 0.98333 0.91803 0.91341 0.91467 0.95531 0.93801 0.90302 0.93908 0.90119 0.87886 0.92118 0.76825 0.91951 0.91877 0.95248 0.91451 0.93365 0.93403 0.91455 0.95268 0.96370 0.96338 0.93032 0.94459 0.88560 0.90313 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.06 0.58 0.77 16 2 N -0.55 -5.23 4.97 -242.75 -1.21 -6.43 16 3 C 0.06 0.50 5.62 -3.77 -0.02 0.48 16 4 C 0.06 0.51 5.61 -3.77 -0.02 0.49 16 5 N -0.52 -6.01 4.40 -235.91 -1.04 -7.05 16 6 C 0.04 0.39 5.45 -4.98 -0.03 0.36 16 7 C 0.51 7.31 7.39 -10.98 -0.08 7.23 16 8 O -0.53 -9.76 14.68 5.55 0.08 -9.68 16 9 N -0.72 -10.13 4.96 -60.29 -0.30 -10.42 16 10 C 0.13 2.27 4.56 -4.04 -0.02 2.26 16 11 C -0.07 -1.35 0.54 -154.52 -0.08 -1.43 16 12 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 13 C -0.13 -2.18 8.05 37.15 0.30 -1.88 16 14 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 15 C -0.51 -13.48 7.65 -34.44 -0.26 -13.75 16 16 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 19 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 23 C 0.05 0.65 5.27 -3.77 -0.02 0.63 16 24 C 0.06 0.63 5.62 -3.77 -0.02 0.61 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.10 0.89 8.02 -51.93 -0.42 0.48 16 33 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.40 4.61 6.16 -40.82 -0.25 4.36 16 35 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 38 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 42 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 1.35 6.09 -51.93 -0.32 1.04 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -31.27 375.58 -9.68 -40.94 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -9.00 Total: 0.45 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 0.41 Total: -3.93 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -1.81 Total: -49.54 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.27 -9.68 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588783774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.255 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds