Wall clock time and date at job start Fri Apr 10 2020 17:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99798 * 2 1 4 4 O 1.21545 * 120.00059 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00107 * 179.97438 * 3 2 1 6 6 C 1.34779 * 120.00107 * 180.02562 * 5 3 2 7 7 O 1.21240 * 119.99744 * 0.02562 * 6 5 3 8 8 C 1.50699 * 120.00033 * 180.02562 * 6 5 3 9 9 C 1.53006 * 109.46866 * 180.02562 * 8 6 5 10 10 N 1.46902 * 109.46626 * 180.02562 * 9 8 6 11 11 C 1.46852 * 110.99931 * 294.20338 * 10 9 8 12 12 C 1.53038 * 109.52166 * 174.16462 * 11 10 9 13 13 C 1.53111 * 109.27933 * 59.17985 * 12 11 10 14 14 C 1.52999 * 109.57722 * 182.40588 * 13 12 11 15 15 C 1.50695 * 109.47441 * 294.72228 * 14 13 12 16 16 H 1.08002 * 119.99692 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00061 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47233 * 89.99929 * 19 17 15 21 21 H 1.48506 * 109.47166 * 210.00010 * 19 17 15 22 22 H 1.48493 * 109.47410 * 329.99918 * 19 17 15 23 23 C 1.53113 * 109.16361 * 302.34846 * 13 12 11 24 24 C 1.46845 * 110.99560 * 170.00278 * 10 9 8 25 25 H 1.09002 * 109.46725 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47637 * 299.99524 * 1 2 3 27 27 H 1.09000 * 109.47357 * 59.99959 * 1 2 3 28 28 H 0.96996 * 120.00352 * 180.02562 * 2 1 3 29 29 H 0.96996 * 120.00043 * 0.02562 * 5 3 2 30 30 H 1.08993 * 109.47512 * 60.00410 * 8 6 5 31 31 H 1.09000 * 109.47247 * 300.00119 * 8 6 5 32 32 H 1.09000 * 109.47050 * 299.99952 * 9 8 6 33 33 H 1.09001 * 109.46801 * 60.00064 * 9 8 6 34 34 H 1.08996 * 109.46717 * 294.18527 * 11 10 9 35 35 H 1.09002 * 109.45810 * 54.15580 * 11 10 9 36 36 H 1.09009 * 109.50306 * 299.24202 * 12 11 10 37 37 H 1.09000 * 109.50216 * 179.12976 * 12 11 10 38 38 H 1.09011 * 109.52176 * 62.25284 * 13 12 11 39 39 H 1.09002 * 109.46686 * 54.71900 * 14 13 12 40 40 H 1.09001 * 109.47140 * 174.71494 * 14 13 12 41 41 H 0.97000 * 120.00268 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.50089 * 297.70933 * 23 13 12 43 43 H 1.09004 * 109.50328 * 177.59242 * 23 13 12 44 44 H 1.09000 * 109.46228 * 305.85144 * 24 10 9 45 45 H 1.09001 * 109.47085 * 65.82947 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2198 0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.1604 2.3346 0.0010 7 8 3.5541 3.3845 0.0015 8 6 5.6674 2.3346 0.0010 9 6 6.1773 3.7772 0.0023 10 7 7.6463 3.7772 0.0017 11 6 8.1731 3.2138 1.2514 12 6 9.6960 3.0953 1.1569 13 6 10.2964 4.4814 0.9071 14 6 11.8139 4.3623 0.7518 15 6 12.4176 3.9030 2.0539 16 1 11.7826 3.7152 2.9070 17 6 13.7807 3.7225 2.1560 18 7 14.5539 3.9507 1.1170 19 14 14.5292 3.1538 3.7703 20 1 14.5811 1.6700 3.7963 21 1 15.9044 3.6996 3.8977 22 1 13.6972 3.6399 4.9001 23 6 9.6952 5.0661 -0.3739 24 6 8.1724 5.1276 -0.2351 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.9716 0.3273 0.0005 30 1 6.0308 1.8213 -0.8891 31 1 6.0308 1.8204 0.8908 32 1 5.8139 4.2918 -0.8872 33 1 5.8139 4.2902 0.8928 34 1 7.9106 3.8671 2.0834 35 1 7.7414 2.2264 1.4149 36 1 9.9589 2.4310 0.3336 37 1 10.0881 2.6915 2.0904 38 1 10.0666 5.1350 1.7487 39 1 12.0433 3.6386 -0.0304 40 1 12.2287 5.3333 0.4814 41 1 15.5128 3.8234 1.1887 42 1 9.9582 4.4329 -1.2213 43 1 10.0869 6.0707 -0.5341 44 1 7.7401 5.5303 -1.1511 45 1 7.9100 5.7720 0.6040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592135587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:47 Heat of formation + Delta-G solvation = -76.737729 kcal Electronic energy + Delta-G solvation = -23766.606991 eV Core-core repulsion = 20204.648653 eV Total energy + Delta-G solvation = -3561.958337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.43248 -39.15436 -38.40379 -35.10167 -34.86784 -34.71208 -32.61110 -30.94915 -30.26550 -27.95480 -27.18324 -24.66452 -23.15313 -22.75387 -21.48448 -20.79465 -20.43525 -19.33961 -18.91566 -17.63583 -16.61765 -16.24102 -15.86051 -15.43317 -15.30969 -15.08617 -14.60412 -14.45323 -14.15516 -13.88104 -13.60495 -13.35888 -13.11913 -12.88573 -12.74850 -12.25282 -12.13269 -11.84072 -11.48670 -11.32001 -11.21722 -11.03792 -10.78329 -10.64094 -10.56903 -10.41176 -10.25614 -9.93008 -9.91019 -9.64071 -9.51729 -9.03700 -8.86152 -8.31970 -8.12625 -5.96564 -3.97963 1.81789 2.00099 2.96017 3.32257 3.38991 3.41886 3.48723 4.02201 4.45201 4.47786 4.68038 4.75086 4.91033 5.05555 5.29942 5.30820 5.35913 5.38848 5.44499 5.54472 5.68224 5.72603 5.78452 5.83312 5.87398 5.90782 6.00088 6.11710 6.16138 6.25735 6.46136 6.58347 6.68302 6.98873 7.07728 7.11223 7.20598 7.30609 7.36878 7.72156 7.75762 7.88793 8.00778 8.04452 8.47548 9.08697 9.65336 11.14708 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.030204 B = 0.002327 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.797005 B =12029.344002 C =12670.574657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.744 5.744 3 C 0.690 3.310 4 O -0.531 6.531 5 N -0.693 5.693 6 C 0.519 3.481 7 O -0.468 6.468 8 C -0.135 4.135 9 C 0.068 3.932 10 N -0.537 5.537 11 C 0.050 3.950 12 C -0.099 4.099 13 C -0.083 4.083 14 C 0.028 3.972 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.112 4.112 24 C 0.060 3.940 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.400 0.600 29 H 0.411 0.589 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.017 0.983 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.680 -11.010 -3.539 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.401 5.401 3 C 0.390 3.610 4 O -0.402 6.402 5 N -0.360 5.360 6 C 0.305 3.695 7 O -0.336 6.336 8 C -0.175 4.175 9 C -0.060 4.060 10 N -0.262 5.262 11 C -0.077 4.077 12 C -0.137 4.137 13 C -0.101 4.101 14 C -0.009 4.009 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.149 4.149 24 C -0.067 4.067 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.234 0.766 29 H 0.246 0.754 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -24.295 -9.615 -3.974 26.429 hybrid contribution 0.728 -0.885 1.560 1.935 sum -23.567 -10.500 -2.414 25.913 Atomic orbital electron populations 1.21481 0.77514 1.02411 1.02699 1.45062 1.08208 1.06946 1.79926 1.16220 0.81478 0.84888 0.78385 1.91082 1.67018 1.29815 1.52319 1.44255 1.06791 1.11877 1.73041 1.21094 0.90703 0.82530 0.75178 1.90840 1.70244 1.30406 1.42078 1.21738 0.88713 1.01201 1.05876 1.21775 0.88242 0.93818 1.02214 1.61941 1.05411 1.23001 1.35848 1.22297 0.97668 0.98427 0.89314 1.21542 0.91050 0.98561 1.02531 1.21244 0.98804 0.94946 0.95134 1.19117 0.87880 0.96996 0.96932 1.21254 0.91873 1.44604 0.97470 0.92739 1.25024 0.97484 0.95820 0.96237 1.69963 1.04496 1.49572 1.29505 0.86653 0.78550 0.78828 0.84297 1.20752 1.21339 1.19994 1.21696 0.92378 1.00951 0.99921 1.22095 0.96877 0.87966 0.99776 0.90207 0.92033 0.92031 0.76628 0.75433 0.87146 0.87983 0.90116 0.94162 0.95318 0.91592 0.91824 0.90934 0.93057 0.96501 0.96757 0.93116 0.91562 0.92081 0.91474 0.95218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 10.70 59.85 0.64 1.14 16 2 N -0.74 -4.14 5.72 -72.08 -0.41 -4.55 16 3 C 0.69 7.07 8.50 -86.92 -0.74 6.33 16 4 O -0.53 -8.49 14.74 -18.48 -0.27 -8.76 16 5 N -0.69 -5.33 5.24 -15.78 -0.08 -5.41 16 6 C 0.52 5.67 7.77 -10.99 -0.09 5.59 16 7 O -0.47 -7.59 14.38 -18.21 -0.26 -7.85 16 8 C -0.13 -1.19 5.63 -27.88 -0.16 -1.35 16 9 C 0.07 0.82 4.25 -3.82 -0.02 0.81 16 10 N -0.54 -7.43 4.66 -234.66 -1.09 -8.52 16 11 C 0.05 0.72 5.29 -3.83 -0.02 0.70 16 12 C -0.10 -1.77 5.15 -26.65 -0.14 -1.91 16 13 C -0.08 -1.66 2.20 -90.50 -0.20 -1.86 16 14 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 15 C -0.51 -14.17 8.45 -34.44 -0.29 -14.47 16 16 H 0.05 1.46 7.08 -52.49 -0.37 1.09 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.11 -1.92 5.38 -26.65 -0.14 -2.06 16 24 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 25 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.40 0.70 8.84 -40.82 -0.36 0.34 16 29 H 0.41 1.17 8.71 -40.82 -0.36 0.81 16 30 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.75 6.43 -51.93 -0.33 0.41 16 32 H 0.08 1.01 7.94 -51.93 -0.41 0.60 16 33 H 0.04 0.53 8.08 -51.93 -0.42 0.12 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.78 6.21 -51.93 -0.32 0.46 16 36 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.07 1.38 7.06 -51.93 -0.37 1.02 16 38 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.89 8.01 -51.93 -0.42 0.48 16 45 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -37.38 361.96 -9.91 -47.29 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.57 Total: -3.89 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.39 Total: -4.17 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.85 Total: -44.52 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.53 Total: -16.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.38 -9.91 -47.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592135587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.448 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds