Wall clock time and date at job start Fri Apr 10 2020 17:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99798 * 2 1 4 4 O 1.21545 * 120.00059 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00107 * 179.97438 * 3 2 1 6 6 C 1.34779 * 120.00107 * 180.02562 * 5 3 2 7 7 O 1.21240 * 119.99744 * 0.02562 * 6 5 3 8 8 C 1.50699 * 120.00033 * 180.02562 * 6 5 3 9 9 C 1.53006 * 109.46866 * 180.02562 * 8 6 5 10 10 N 1.46902 * 109.46626 * 180.02562 * 9 8 6 11 11 C 1.46852 * 110.99931 * 294.20338 * 10 9 8 12 12 C 1.53038 * 109.52166 * 174.16462 * 11 10 9 13 13 C 1.53111 * 109.27933 * 59.17985 * 12 11 10 14 14 C 1.52999 * 109.57722 * 182.40588 * 13 12 11 15 15 C 1.50695 * 109.47441 * 294.72228 * 14 13 12 16 16 H 1.08002 * 119.99692 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00061 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47233 * 89.99929 * 19 17 15 21 21 H 1.48506 * 109.47166 * 210.00010 * 19 17 15 22 22 H 1.48493 * 109.47410 * 329.99918 * 19 17 15 23 23 C 1.53113 * 109.16361 * 302.34846 * 13 12 11 24 24 C 1.46845 * 110.99560 * 170.00278 * 10 9 8 25 25 H 1.09002 * 109.46725 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47637 * 299.99524 * 1 2 3 27 27 H 1.09000 * 109.47357 * 59.99959 * 1 2 3 28 28 H 0.96996 * 120.00352 * 180.02562 * 2 1 3 29 29 H 0.96996 * 120.00043 * 0.02562 * 5 3 2 30 30 H 1.08993 * 109.47512 * 60.00410 * 8 6 5 31 31 H 1.09000 * 109.47247 * 300.00119 * 8 6 5 32 32 H 1.09000 * 109.47050 * 299.99952 * 9 8 6 33 33 H 1.09001 * 109.46801 * 60.00064 * 9 8 6 34 34 H 1.08996 * 109.46717 * 294.18527 * 11 10 9 35 35 H 1.09002 * 109.45810 * 54.15580 * 11 10 9 36 36 H 1.09009 * 109.50306 * 299.24202 * 12 11 10 37 37 H 1.09000 * 109.50216 * 179.12976 * 12 11 10 38 38 H 1.09011 * 109.52176 * 62.25284 * 13 12 11 39 39 H 1.09002 * 109.46686 * 54.71900 * 14 13 12 40 40 H 1.09001 * 109.47140 * 174.71494 * 14 13 12 41 41 H 0.97000 * 120.00268 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.50089 * 297.70933 * 23 13 12 43 43 H 1.09004 * 109.50328 * 177.59242 * 23 13 12 44 44 H 1.09000 * 109.46228 * 305.85144 * 24 10 9 45 45 H 1.09001 * 109.47085 * 65.82947 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2198 0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.1604 2.3346 0.0010 7 8 3.5541 3.3845 0.0015 8 6 5.6674 2.3346 0.0010 9 6 6.1773 3.7772 0.0023 10 7 7.6463 3.7772 0.0017 11 6 8.1731 3.2138 1.2514 12 6 9.6960 3.0953 1.1569 13 6 10.2964 4.4814 0.9071 14 6 11.8139 4.3623 0.7518 15 6 12.4176 3.9030 2.0539 16 1 11.7826 3.7152 2.9070 17 6 13.7807 3.7225 2.1560 18 7 14.5539 3.9507 1.1170 19 14 14.5292 3.1538 3.7703 20 1 14.5811 1.6700 3.7963 21 1 15.9044 3.6996 3.8977 22 1 13.6972 3.6399 4.9001 23 6 9.6952 5.0661 -0.3739 24 6 8.1724 5.1276 -0.2351 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.9716 0.3273 0.0005 30 1 6.0308 1.8213 -0.8891 31 1 6.0308 1.8204 0.8908 32 1 5.8139 4.2918 -0.8872 33 1 5.8139 4.2902 0.8928 34 1 7.9106 3.8671 2.0834 35 1 7.7414 2.2264 1.4149 36 1 9.9589 2.4310 0.3336 37 1 10.0881 2.6915 2.0904 38 1 10.0666 5.1350 1.7487 39 1 12.0433 3.6386 -0.0304 40 1 12.2287 5.3333 0.4814 41 1 15.5128 3.8234 1.1887 42 1 9.9582 4.4329 -1.2213 43 1 10.0869 6.0707 -0.5341 44 1 7.7401 5.5303 -1.1511 45 1 7.9100 5.7720 0.6040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592135587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:47 Heat of formation + Delta-G solvation = -105.146596 kcal Electronic energy + Delta-G solvation = -23767.838892 eV Core-core repulsion = 20204.648653 eV Total energy + Delta-G solvation = -3563.190238 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.22644 -40.23935 -39.45058 -36.39705 -35.87284 -35.43098 -34.47664 -32.23292 -31.53518 -29.42508 -27.98018 -26.13066 -24.47956 -23.98114 -22.60579 -21.87992 -21.44763 -20.41737 -20.00650 -18.51153 -18.33524 -17.40030 -16.84451 -16.49889 -16.30664 -16.07368 -15.91943 -15.55986 -15.18402 -15.13477 -14.80717 -14.67491 -14.28763 -13.98474 -13.85137 -13.55450 -13.22294 -13.08038 -12.96106 -12.78897 -12.52886 -12.48581 -12.15836 -12.13396 -11.99079 -11.93146 -11.60820 -11.27875 -11.19955 -10.83812 -10.81131 -10.66881 -10.48820 -10.20184 -9.26037 -8.14524 -6.23914 0.99199 1.35198 1.41546 1.42746 1.53379 2.20013 2.43927 2.78470 3.17466 3.19487 3.68641 3.89662 4.05809 4.08417 4.17713 4.24087 4.42048 4.43676 4.57455 4.60368 4.62746 4.70895 4.78097 4.86632 4.89303 4.92202 5.00092 5.02068 5.10737 5.14990 5.21859 5.30695 5.41756 5.44645 5.51615 5.54327 5.62041 5.84750 5.92835 6.15530 6.18929 6.33605 6.54991 6.92427 7.09707 7.33919 7.44257 8.97260 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.030204 B = 0.002327 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.797005 B =12029.344002 C =12670.574657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.721 5.721 3 C 0.683 3.317 4 O -0.594 6.594 5 N -0.673 5.673 6 C 0.523 3.477 7 O -0.527 6.527 8 C -0.122 4.122 9 C 0.070 3.930 10 N -0.536 5.536 11 C 0.058 3.942 12 C -0.093 4.093 13 C -0.078 4.078 14 C 0.033 3.967 15 C -0.527 4.527 16 H 0.061 0.939 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.961 3.039 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.105 4.105 24 C 0.065 3.935 25 H 0.122 0.878 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.423 0.577 29 H 0.436 0.564 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.042 0.958 39 H -0.009 1.009 40 H -0.017 1.017 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.787 -13.662 -2.716 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.379 5.379 3 C 0.383 3.617 4 O -0.471 6.471 5 N -0.341 5.341 6 C 0.311 3.689 7 O -0.399 6.399 8 C -0.162 4.162 9 C -0.058 4.058 10 N -0.261 5.261 11 C -0.070 4.070 12 C -0.131 4.131 13 C -0.097 4.097 14 C -0.004 4.004 15 C -0.565 4.565 16 H 0.079 0.921 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.143 4.143 24 C -0.063 4.063 25 H 0.140 0.860 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.260 0.740 29 H 0.276 0.724 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.010 0.990 40 H 0.001 0.999 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -25.393 -12.383 -3.149 28.427 hybrid contribution 1.072 -0.094 1.259 1.656 sum -24.322 -12.477 -1.890 27.400 Atomic orbital electron populations 1.21647 0.76851 1.04722 1.01369 1.44948 1.08610 1.06521 1.77813 1.16570 0.82056 0.85148 0.77933 1.91049 1.68350 1.32424 1.55250 1.43958 1.06128 1.12363 1.71673 1.21484 0.91471 0.82343 0.73643 1.90832 1.71441 1.32679 1.44971 1.21688 0.86876 0.99382 1.08261 1.21747 0.86656 0.96039 1.01383 1.61932 1.06539 1.22184 1.35440 1.22221 0.94904 1.00413 0.89415 1.21418 0.93787 0.96451 1.01456 1.21117 0.95377 0.96817 0.96383 1.19013 0.91664 0.94276 0.95430 1.21645 0.92371 1.44183 0.98314 0.92112 1.25966 0.98154 0.95961 1.00028 1.70105 1.04824 1.50794 1.31895 0.85508 0.77452 0.78707 0.79743 1.19591 1.21221 1.18921 1.21587 0.94379 1.00384 0.97982 1.22014 0.94751 0.88846 1.00667 0.85976 0.93462 0.93402 0.73987 0.72399 0.84553 0.85483 0.90702 0.95496 0.95666 0.88021 0.92457 0.92290 0.93915 0.99035 0.99912 0.93017 0.92094 0.92387 0.89693 0.95436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 10.70 127.77 1.37 2.14 16 2 N -0.72 -6.32 5.72 -500.25 -2.86 -9.18 16 3 C 0.68 13.14 8.50 179.05 1.52 14.66 16 4 O -0.59 -19.37 14.74 18.91 0.28 -19.09 16 5 N -0.67 -8.73 5.24 -440.51 -2.31 -11.03 16 6 C 0.52 10.49 7.77 87.66 0.68 11.17 16 7 O -0.53 -17.15 14.38 19.86 0.29 -16.86 16 8 C -0.12 -1.74 5.63 29.85 0.17 -1.57 16 9 C 0.07 1.54 4.25 86.31 0.37 1.91 16 10 N -0.54 -13.58 4.66 -896.33 -4.17 -17.76 16 11 C 0.06 1.51 5.29 86.33 0.46 1.97 16 12 C -0.09 -3.25 5.15 30.64 0.16 -3.09 16 13 C -0.08 -3.18 2.20 -10.72 -0.02 -3.20 16 14 C 0.03 1.75 4.45 29.85 0.13 1.88 16 15 C -0.53 -29.52 8.45 25.60 0.22 -29.31 16 16 H 0.06 3.25 7.08 -2.91 -0.02 3.23 16 17 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 18 N -0.94 -57.13 13.29 21.45 0.28 -56.84 16 19 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 C -0.11 -3.62 5.38 30.65 0.16 -3.46 16 24 C 0.07 1.83 5.46 86.33 0.47 2.30 16 25 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.42 -0.08 8.84 -92.71 -0.82 -0.90 16 29 H 0.44 0.77 8.71 -92.71 -0.81 -0.03 16 30 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.13 1.23 6.43 -2.39 -0.02 1.22 16 32 H 0.07 1.76 7.94 -2.39 -0.02 1.74 16 33 H 0.03 0.68 8.08 -2.39 -0.02 0.66 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.96 6.21 -2.39 -0.01 1.95 16 36 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.06 2.20 7.06 -2.39 -0.02 2.18 16 38 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.08 2.12 8.01 -2.39 -0.02 2.10 16 45 H 0.03 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -86.01 361.96 -0.96 -86.96 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -0.64 Total: 2.08 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 6.14 Total: -4.37 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -9.06 Total: -94.81 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: 0.56 Total: -35.95 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -86.01 -0.96 -86.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592135587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.183 kcal (2) G-P(sol) polarization free energy of solvation -86.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds