Wall clock time and date at job start Fri Apr 10 2020 17:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47598 * 2 1 4 4 H 1.09005 * 109.46973 * 305.00262 * 3 2 1 5 5 C 1.52988 * 109.47772 * 184.99740 * 3 2 1 6 6 N 1.46900 * 109.47096 * 64.79893 * 5 3 2 7 7 C 1.48533 * 110.99880 * 58.24627 * 6 5 3 8 8 C 1.54941 * 103.22758 * 159.72061 * 7 6 5 9 9 C 1.54593 * 102.92043 * 322.58369 * 8 7 6 10 10 C 1.47902 * 111.00047 * 175.64163 * 6 5 3 11 11 N 1.46503 * 109.46986 * 64.99208 * 3 2 1 12 12 C 1.34780 * 120.00460 * 253.52986 * 11 3 2 13 13 O 1.21281 * 119.99779 * 0.02562 * 12 11 3 14 14 C 1.50695 * 119.99869 * 180.02562 * 12 11 3 15 15 H 1.09000 * 109.47279 * 319.99769 * 14 12 11 16 16 N 1.46907 * 109.46721 * 199.99799 * 14 12 11 17 17 C 1.53001 * 109.47020 * 80.00362 * 14 12 11 18 18 C 1.53002 * 109.47018 * 185.00144 * 17 14 12 19 19 C 1.50697 * 109.47238 * 179.97438 * 18 17 14 20 20 H 1.07999 * 120.00359 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00279 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00387 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47022 * 90.00088 * 23 21 19 25 25 H 1.48506 * 109.47548 * 210.00209 * 23 21 19 26 26 H 1.48496 * 109.47122 * 330.00439 * 23 21 19 27 27 H 1.09006 * 109.46766 * 60.00316 * 1 2 3 28 28 H 1.09002 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47328 * 300.00146 * 1 2 3 30 30 H 1.08998 * 109.47328 * 239.99854 * 2 1 3 31 31 H 1.09003 * 109.46985 * 120.00167 * 2 1 3 32 32 H 1.08993 * 109.47616 * 184.80278 * 5 3 2 33 33 H 1.09003 * 109.47148 * 304.80301 * 5 3 2 34 34 H 1.08999 * 110.66330 * 278.15414 * 7 6 5 35 35 H 1.08999 * 110.66968 * 41.28557 * 7 6 5 36 36 H 1.08998 * 110.72439 * 204.22700 * 8 7 6 37 37 H 1.09004 * 110.72513 * 80.94084 * 8 7 6 38 38 H 1.08997 * 110.31084 * 263.03947 * 9 8 7 39 39 H 1.09000 * 110.30742 * 140.87208 * 9 8 7 40 40 H 1.09000 * 109.91581 * 333.50949 * 10 6 5 41 41 H 1.09000 * 109.92139 * 94.60561 * 10 6 5 42 42 H 0.96997 * 119.99570 * 73.52946 * 11 3 2 43 43 H 1.00907 * 110.99602 * 176.04532 * 16 14 12 44 44 H 1.00898 * 110.99947 * 300.00078 * 16 14 12 45 45 H 1.09000 * 109.46846 * 304.99395 * 17 14 12 46 46 H 1.08994 * 109.47901 * 64.99753 * 17 14 12 47 47 H 1.09008 * 109.46543 * 299.99677 * 18 17 14 48 48 H 1.08995 * 109.47625 * 59.99085 * 18 17 14 49 49 H 0.96996 * 119.99855 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1256 6 7 3.9492 0.8918 -1.4314 7 6 3.3446 1.6747 -2.5394 8 6 4.2373 1.3173 -3.7543 9 6 5.6495 1.2292 -3.1315 10 6 5.4123 0.9736 -1.6315 11 7 1.6524 2.0975 1.2518 12 6 0.6657 3.0156 1.2545 13 8 0.0984 3.2992 0.2207 14 6 0.2674 3.6898 2.5421 15 1 0.2734 2.9597 3.3514 16 7 -1.0815 4.2546 2.4021 17 6 1.2593 4.8108 2.8589 18 6 0.9289 5.4129 4.2261 19 6 1.9062 6.5166 4.5384 20 1 2.6855 6.7637 3.8326 21 6 1.8057 7.2110 5.7253 22 7 0.8565 6.9105 6.5846 23 14 3.0176 8.5787 6.1128 24 1 2.4888 9.8684 5.6009 25 1 3.2076 8.6701 7.5828 26 1 4.3200 8.2848 5.4627 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.9352 2.4658 -0.0400 33 1 3.9955 0.8339 0.6681 34 1 2.3149 1.3626 -2.7137 35 1 3.3933 2.7427 -2.3272 36 1 4.1964 2.1040 -4.5077 37 1 3.9431 0.3581 -4.1803 38 1 6.1857 2.1672 -3.2754 39 1 6.2066 0.4026 -3.5726 40 1 5.8219 1.7962 -1.0454 41 1 5.8810 0.0358 -1.3330 42 1 2.1058 1.8704 2.0786 43 1 -1.3975 4.6561 3.2723 44 1 -1.1132 4.9348 1.6575 45 1 2.2714 4.4065 2.8750 46 1 1.1894 5.5847 2.0946 47 1 -0.0833 5.8172 4.2099 48 1 0.9988 4.6390 4.9904 49 1 0.7860 7.3989 7.4197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592143764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:50 Heat of formation + Delta-G solvation = -58.751683 kcal Electronic energy + Delta-G solvation = -24873.511264 eV Core-core repulsion = 21448.165954 eV Total energy + Delta-G solvation = -3425.345309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05479 -39.00429 -36.33493 -35.25953 -32.87009 -32.42616 -31.87518 -29.89026 -29.19106 -27.94758 -26.24356 -24.04675 -23.40382 -21.80656 -21.17415 -20.72903 -20.23611 -19.74889 -17.38563 -16.62282 -16.30986 -16.00107 -15.67846 -15.03474 -14.66648 -14.50327 -14.36168 -14.17123 -14.07000 -13.63093 -13.62727 -13.09738 -12.85614 -12.67400 -12.52398 -12.21860 -12.16178 -11.70980 -11.69407 -11.55739 -11.39222 -11.14933 -11.07964 -10.99684 -10.93520 -10.83042 -10.74661 -10.67948 -10.00493 -9.89498 -9.29550 -9.20008 -8.94648 -8.67931 -8.45583 -8.17821 -6.10184 -4.13389 2.95836 3.17770 3.25613 3.32370 3.35171 3.89671 4.35260 4.37856 4.39945 4.66043 4.68160 4.93346 5.03074 5.08906 5.12841 5.20795 5.24030 5.26140 5.31570 5.38371 5.44572 5.52479 5.57004 5.58560 5.59917 5.71133 5.76655 5.79276 5.85191 5.88421 5.93327 6.03345 6.15540 6.27566 6.38518 6.50463 6.56396 6.61804 6.80055 6.86254 7.44465 7.50788 7.60540 7.73860 7.86896 7.91138 8.29537 8.51143 8.92600 9.51562 11.00729 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.003238 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.735388 B = 8644.255113 C = 9888.599262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.141 3.859 4 H 0.098 0.902 5 C 0.036 3.964 6 N -0.511 5.511 7 C 0.029 3.971 8 C -0.123 4.123 9 C -0.131 4.131 10 C 0.035 3.965 11 N -0.729 5.729 12 C 0.529 3.471 13 O -0.538 6.538 14 C 0.074 3.926 15 H 0.096 0.904 16 N -0.830 5.830 17 C -0.136 4.136 18 C 0.024 3.976 19 C -0.524 4.524 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.400 0.600 43 H 0.354 0.646 44 H 0.345 0.655 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -14.618 -16.100 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C 0.036 3.964 4 H 0.116 0.884 5 C -0.093 4.093 6 N -0.235 5.235 7 C -0.099 4.099 8 C -0.161 4.161 9 C -0.169 4.169 10 C -0.093 4.093 11 N -0.382 5.382 12 C 0.316 3.684 13 O -0.414 6.414 14 C -0.041 4.041 15 H 0.113 0.887 16 N -0.362 5.362 17 C -0.176 4.176 18 C -0.013 4.013 19 C -0.562 4.562 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.234 0.766 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.532 -15.642 -16.835 23.637 hybrid contribution 1.722 2.484 1.170 3.241 sum 7.254 -13.158 -15.666 21.706 Atomic orbital electron populations 1.21710 0.95607 1.00808 1.02367 1.21822 0.96070 0.95636 1.02739 1.20977 0.92914 0.94027 0.88508 0.88377 1.22604 0.95844 0.98591 0.92236 1.64757 1.06594 1.50506 1.01661 1.23309 0.99469 0.96296 0.90784 1.22478 0.94426 1.02090 0.97155 1.22393 0.97609 1.01936 0.94996 1.22867 0.88898 1.01320 0.96227 1.45965 1.38609 1.42692 1.10925 1.20851 0.78300 0.77958 0.91298 1.90619 1.53189 1.63298 1.34248 1.21479 0.90975 0.97802 0.93863 0.88650 1.58747 1.22269 1.43321 1.11884 1.22368 0.97596 0.96096 1.01566 1.19099 0.97065 0.95632 0.89468 1.21178 1.14331 1.17503 1.03224 0.92775 1.25013 0.95667 0.97349 0.96283 1.69950 1.32439 1.41253 1.09535 0.86585 0.81517 0.82383 0.77480 1.20608 1.21124 1.19908 0.92793 0.93242 0.92750 0.90054 0.92157 0.93938 0.90183 0.89665 0.93471 0.91084 0.90706 0.91556 0.91019 0.93665 0.90250 0.76594 0.83112 0.84190 0.92639 0.92791 0.96407 0.96329 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.69 37.16 0.36 -1.38 16 2 C -0.12 -1.30 5.55 -26.73 -0.15 -1.45 16 3 C 0.14 1.63 2.17 -67.94 -0.15 1.48 16 4 H 0.10 1.35 5.52 -51.93 -0.29 1.07 16 5 C 0.04 0.37 4.55 -3.83 -0.02 0.35 16 6 N -0.51 -4.88 4.72 -230.46 -1.09 -5.97 16 7 C 0.03 0.28 5.33 -1.90 -0.01 0.27 16 8 C -0.12 -0.94 7.06 -24.87 -0.18 -1.12 16 9 C -0.13 -0.95 6.93 -25.37 -0.18 -1.12 16 10 C 0.03 0.29 6.70 -2.75 -0.02 0.27 16 11 N -0.73 -9.27 4.50 -53.81 -0.24 -9.51 16 12 C 0.53 8.56 6.34 -10.99 -0.07 8.49 16 13 O -0.54 -10.22 15.63 5.56 0.09 -10.13 16 14 C 0.07 1.25 3.21 -68.86 -0.22 1.03 16 15 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 16 N -0.83 -14.35 8.94 -5.65 -0.05 -14.40 16 17 C -0.14 -2.66 4.78 -26.73 -0.13 -2.79 16 18 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 19 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 23 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.74 7.21 -51.93 -0.37 0.36 16 30 H 0.08 0.83 7.61 -51.93 -0.40 0.43 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.49 7.97 -51.93 -0.41 0.07 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.83 7.54 -51.93 -0.39 0.44 16 35 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.04 0.39 7.66 -51.93 -0.40 -0.01 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.40 4.35 8.81 -40.82 -0.36 3.99 16 43 H 0.35 6.14 7.55 -39.29 -0.30 5.84 16 44 H 0.34 6.06 8.58 -39.29 -0.34 5.72 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.02 0.45 6.87 -51.92 -0.36 0.09 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -30.51 384.79 -10.14 -40.65 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -9.06 Total: 11.24 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.29 Total: -8.64 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.64 Total: -55.13 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.51 -10.14 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592143764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.104 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds