Wall clock time and date at job start Fri Apr 10 2020 17:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47598 * 2 1 4 4 H 1.09005 * 109.46973 * 305.00262 * 3 2 1 5 5 C 1.52988 * 109.47772 * 184.99740 * 3 2 1 6 6 N 1.46900 * 109.47096 * 64.79893 * 5 3 2 7 7 C 1.48533 * 110.99880 * 58.24627 * 6 5 3 8 8 C 1.54941 * 103.22758 * 159.72061 * 7 6 5 9 9 C 1.54593 * 102.92043 * 322.58369 * 8 7 6 10 10 C 1.47902 * 111.00047 * 175.64163 * 6 5 3 11 11 N 1.46503 * 109.46986 * 64.99208 * 3 2 1 12 12 C 1.34780 * 120.00460 * 253.52986 * 11 3 2 13 13 O 1.21281 * 119.99779 * 0.02562 * 12 11 3 14 14 C 1.50695 * 119.99869 * 180.02562 * 12 11 3 15 15 H 1.09000 * 109.47279 * 319.99769 * 14 12 11 16 16 N 1.46907 * 109.46721 * 199.99799 * 14 12 11 17 17 C 1.53001 * 109.47020 * 80.00362 * 14 12 11 18 18 C 1.53002 * 109.47018 * 185.00144 * 17 14 12 19 19 C 1.50697 * 109.47238 * 179.97438 * 18 17 14 20 20 H 1.07999 * 120.00359 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00279 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00387 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47022 * 90.00088 * 23 21 19 25 25 H 1.48506 * 109.47548 * 210.00209 * 23 21 19 26 26 H 1.48496 * 109.47122 * 330.00439 * 23 21 19 27 27 H 1.09006 * 109.46766 * 60.00316 * 1 2 3 28 28 H 1.09002 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47328 * 300.00146 * 1 2 3 30 30 H 1.08998 * 109.47328 * 239.99854 * 2 1 3 31 31 H 1.09003 * 109.46985 * 120.00167 * 2 1 3 32 32 H 1.08993 * 109.47616 * 184.80278 * 5 3 2 33 33 H 1.09003 * 109.47148 * 304.80301 * 5 3 2 34 34 H 1.08999 * 110.66330 * 278.15414 * 7 6 5 35 35 H 1.08999 * 110.66968 * 41.28557 * 7 6 5 36 36 H 1.08998 * 110.72439 * 204.22700 * 8 7 6 37 37 H 1.09004 * 110.72513 * 80.94084 * 8 7 6 38 38 H 1.08997 * 110.31084 * 263.03947 * 9 8 7 39 39 H 1.09000 * 110.30742 * 140.87208 * 9 8 7 40 40 H 1.09000 * 109.91581 * 333.50949 * 10 6 5 41 41 H 1.09000 * 109.92139 * 94.60561 * 10 6 5 42 42 H 0.96997 * 119.99570 * 73.52946 * 11 3 2 43 43 H 1.00907 * 110.99602 * 176.04532 * 16 14 12 44 44 H 1.00898 * 110.99947 * 300.00078 * 16 14 12 45 45 H 1.09000 * 109.46846 * 304.99395 * 17 14 12 46 46 H 1.08994 * 109.47901 * 64.99753 * 17 14 12 47 47 H 1.09008 * 109.46543 * 299.99677 * 18 17 14 48 48 H 1.08995 * 109.47625 * 59.99085 * 18 17 14 49 49 H 0.96996 * 119.99855 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1256 6 7 3.9492 0.8918 -1.4314 7 6 3.3446 1.6747 -2.5394 8 6 4.2373 1.3173 -3.7543 9 6 5.6495 1.2292 -3.1315 10 6 5.4123 0.9736 -1.6315 11 7 1.6524 2.0975 1.2518 12 6 0.6657 3.0156 1.2545 13 8 0.0984 3.2992 0.2207 14 6 0.2674 3.6898 2.5421 15 1 0.2734 2.9597 3.3514 16 7 -1.0815 4.2546 2.4021 17 6 1.2593 4.8108 2.8589 18 6 0.9289 5.4129 4.2261 19 6 1.9062 6.5166 4.5384 20 1 2.6855 6.7637 3.8326 21 6 1.8057 7.2110 5.7253 22 7 0.8565 6.9105 6.5846 23 14 3.0176 8.5787 6.1128 24 1 2.4888 9.8684 5.6009 25 1 3.2076 8.6701 7.5828 26 1 4.3200 8.2848 5.4627 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.9352 2.4658 -0.0400 33 1 3.9955 0.8339 0.6681 34 1 2.3149 1.3626 -2.7137 35 1 3.3933 2.7427 -2.3272 36 1 4.1964 2.1040 -4.5077 37 1 3.9431 0.3581 -4.1803 38 1 6.1857 2.1672 -3.2754 39 1 6.2066 0.4026 -3.5726 40 1 5.8219 1.7962 -1.0454 41 1 5.8810 0.0358 -1.3330 42 1 2.1058 1.8704 2.0786 43 1 -1.3975 4.6561 3.2723 44 1 -1.1132 4.9348 1.6575 45 1 2.2714 4.4065 2.8750 46 1 1.1894 5.5847 2.0946 47 1 -0.0833 5.8172 4.2099 48 1 0.9988 4.6390 4.9904 49 1 0.7860 7.3989 7.4197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592143764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:49 Heat of formation + Delta-G solvation = -80.257787 kcal Electronic energy + Delta-G solvation = -24874.443838 eV Core-core repulsion = 21448.165954 eV Total energy + Delta-G solvation = -3426.277884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.21078 -39.89036 -37.50694 -36.71448 -34.84442 -33.43235 -32.72004 -31.69225 -29.87917 -28.99793 -27.78037 -25.64018 -24.40092 -22.77723 -22.35076 -21.75846 -21.20894 -21.01795 -18.90532 -18.15287 -17.50476 -16.89113 -16.66866 -16.46728 -16.19022 -15.83059 -15.54719 -15.32254 -15.00475 -14.85624 -14.72161 -14.41375 -14.25428 -13.96902 -13.56343 -13.45356 -13.24440 -12.99459 -12.96419 -12.69201 -12.52252 -12.46406 -12.28148 -12.09463 -11.97953 -11.90990 -11.82154 -11.75481 -11.59650 -11.43599 -11.31691 -10.70636 -10.57414 -10.06592 -9.64366 -9.45886 -8.22766 -6.33271 1.38567 1.39011 1.49629 1.64127 2.07583 2.38738 3.08639 3.10927 3.57753 3.73026 3.74839 3.81505 3.93262 3.98923 4.11926 4.17243 4.21207 4.24913 4.33313 4.44957 4.53764 4.58649 4.65246 4.68363 4.72170 4.81591 4.89918 4.92354 4.96604 5.01218 5.06733 5.07391 5.12340 5.18382 5.18909 5.31147 5.43808 5.45039 5.56385 5.64491 5.79428 5.87684 5.98749 6.07028 6.19938 6.46722 6.56291 6.82285 7.27556 7.35927 8.88030 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.003238 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.735388 B = 8644.255113 C = 9888.599262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.143 3.857 4 H 0.075 0.925 5 C 0.044 3.956 6 N -0.511 5.511 7 C 0.026 3.974 8 C -0.120 4.120 9 C -0.129 4.129 10 C 0.031 3.969 11 N -0.714 5.714 12 C 0.532 3.468 13 O -0.569 6.569 14 C 0.080 3.920 15 H 0.108 0.892 16 N -0.830 5.830 17 C -0.119 4.119 18 C 0.031 3.969 19 C -0.545 4.545 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.927 5.927 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.265 1.265 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.028 0.972 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.412 0.588 43 H 0.352 0.648 44 H 0.343 0.657 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 -15.636 -16.630 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.039 3.961 4 H 0.093 0.907 5 C -0.085 4.085 6 N -0.236 5.236 7 C -0.102 4.102 8 C -0.158 4.158 9 C -0.167 4.167 10 C -0.096 4.096 11 N -0.367 5.367 12 C 0.318 3.682 13 O -0.447 6.447 14 C -0.035 4.035 15 H 0.126 0.874 16 N -0.361 5.361 17 C -0.159 4.159 18 C -0.007 4.007 19 C -0.583 4.583 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.566 5.566 23 Si 0.784 3.216 24 H -0.201 1.201 25 H -0.206 1.206 26 H -0.190 1.190 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.248 0.752 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.020 0.980 48 H 0.021 0.979 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.304 -16.690 -17.367 25.170 hybrid contribution 1.162 2.766 1.323 3.279 sum 8.466 -13.924 -16.044 22.869 Atomic orbital electron populations 1.21671 0.96564 1.01321 1.00581 1.21753 0.95017 0.94729 1.03783 1.21020 0.93905 0.94292 0.86931 0.90658 1.22511 0.94521 0.98211 0.93294 1.64784 1.07523 1.50112 1.01173 1.23304 0.99688 0.95304 0.91863 1.22478 0.94219 1.02604 0.96473 1.22403 0.97419 1.02683 0.94153 1.22954 0.87926 1.01686 0.97054 1.45851 1.37294 1.41428 1.12087 1.20621 0.78810 0.78444 0.90304 1.90612 1.54517 1.64569 1.34979 1.21419 0.89983 0.97201 0.94912 0.87401 1.58762 1.22434 1.43210 1.11673 1.22114 0.98867 0.96502 0.98422 1.18961 0.95623 0.94602 0.91478 1.21618 1.14882 1.18431 1.03415 0.92779 1.25867 0.97437 0.99797 0.96212 1.70062 1.34060 1.42518 1.10003 0.85542 0.79434 0.79253 0.77399 1.20127 1.20606 1.18960 0.94341 0.91572 0.94711 0.89254 0.90688 0.95349 0.88645 0.90347 0.95131 0.90387 0.90112 0.91317 0.89599 0.94165 0.89208 0.75200 0.83327 0.84406 0.91625 0.93938 0.98007 0.97920 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.69 71.98 0.70 -2.57 16 2 C -0.11 -2.21 5.55 30.59 0.17 -2.04 16 3 C 0.14 3.19 2.17 44.99 0.10 3.28 16 4 H 0.08 2.09 5.52 -2.38 -0.01 2.08 16 5 C 0.04 0.84 4.55 86.30 0.39 1.23 16 6 N -0.51 -9.04 4.72 -883.03 -4.16 -13.21 16 7 C 0.03 0.48 5.33 86.65 0.46 0.95 16 8 C -0.12 -1.65 7.06 31.80 0.22 -1.42 16 9 C -0.13 -1.60 6.93 31.47 0.22 -1.38 16 10 C 0.03 0.47 6.70 86.45 0.58 1.05 16 11 N -0.71 -17.46 4.50 -442.54 -1.99 -19.45 16 12 C 0.53 17.05 6.34 87.65 0.56 17.61 16 13 O -0.57 -21.80 15.63 -3.03 -0.05 -21.85 16 14 C 0.08 2.69 3.21 44.17 0.14 2.83 16 15 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 16 N -0.83 -28.90 8.94 -171.79 -1.54 -30.43 16 17 C -0.12 -4.64 4.78 30.60 0.15 -4.49 16 18 C 0.03 1.50 4.74 29.85 0.14 1.64 16 19 C -0.55 -29.94 9.11 25.60 0.23 -29.71 16 20 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 21 C 0.01 0.30 5.46 84.65 0.46 0.76 16 22 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 23 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.03 0.91 7.21 -2.39 -0.02 0.90 16 30 H 0.09 1.64 7.61 -2.39 -0.02 1.62 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 0.63 7.97 -2.39 -0.02 0.61 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.53 7.54 -2.39 -0.02 1.51 16 35 H 0.03 0.66 8.02 -2.39 -0.02 0.64 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.04 0.64 7.66 -2.39 -0.02 0.62 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.41 8.23 8.81 -92.71 -0.82 7.41 16 43 H 0.35 12.43 7.55 -89.69 -0.68 11.75 16 44 H 0.34 12.23 8.58 -89.70 -0.77 11.47 16 45 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.00 0.09 6.87 -2.38 -0.02 0.07 16 48 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -65.00 384.79 -2.23 -67.23 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: -1.33 Total: 38.71 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.52 Total: -12.27 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -7.41 Total: -117.13 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.00 -2.23 -67.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592143764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.028 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds