Wall clock time and date at job start Fri Apr 10 2020 17:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 H 1.08996 * 109.47116 * 55.00215 * 3 2 1 5 5 C 1.53002 * 109.47013 * 175.00240 * 3 2 1 6 6 N 1.46902 * 109.47105 * 174.99963 * 5 3 2 7 7 C 1.48531 * 110.99760 * 52.60383 * 6 5 3 8 8 C 1.54937 * 103.22500 * 159.72030 * 7 6 5 9 9 C 1.54591 * 102.92135 * 322.58590 * 8 7 6 10 10 C 1.47895 * 110.99757 * 170.00300 * 6 5 3 11 11 N 1.46498 * 109.46951 * 295.00446 * 3 2 1 12 12 C 1.34776 * 120.00147 * 85.00363 * 11 3 2 13 13 O 1.21280 * 119.99986 * 359.97438 * 12 11 3 14 14 C 1.50697 * 119.99978 * 179.97438 * 12 11 3 15 15 H 1.08999 * 109.47706 * 39.99937 * 14 12 11 16 16 N 1.46906 * 109.47064 * 159.99732 * 14 12 11 17 17 C 1.52998 * 109.47319 * 279.99616 * 14 12 11 18 18 C 1.53005 * 109.47314 * 175.00069 * 17 14 12 19 19 C 1.50701 * 109.47071 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00249 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00086 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99505 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00277 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47146 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47404 * 120.00133 * 23 21 19 26 26 H 1.48508 * 109.46918 * 240.00175 * 23 21 19 27 27 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46636 * 299.99583 * 1 2 3 29 29 H 1.08999 * 109.47402 * 59.99498 * 1 2 3 30 30 H 1.09002 * 109.46636 * 240.00417 * 2 1 3 31 31 H 1.08995 * 109.47514 * 120.00014 * 2 1 3 32 32 H 1.08994 * 109.47183 * 295.00295 * 5 3 2 33 33 H 1.09007 * 109.46833 * 55.00216 * 5 3 2 34 34 H 1.09004 * 110.67147 * 278.15614 * 7 6 5 35 35 H 1.09006 * 110.66710 * 41.28404 * 7 6 5 36 36 H 1.09005 * 110.72428 * 204.22854 * 8 7 6 37 37 H 1.08991 * 110.72303 * 80.94687 * 8 7 6 38 38 H 1.08998 * 110.31413 * 263.04314 * 9 8 7 39 39 H 1.09000 * 110.30833 * 140.87391 * 9 8 7 40 40 H 1.09002 * 109.91910 * 333.50780 * 10 6 5 41 41 H 1.08994 * 109.91982 * 94.60880 * 10 6 5 42 42 H 0.97004 * 119.99788 * 264.99722 * 11 3 2 43 43 H 1.00896 * 111.00309 * 296.04459 * 16 14 12 44 44 H 1.00902 * 110.99923 * 60.00622 * 16 14 12 45 45 H 1.09002 * 109.47460 * 295.00664 * 17 14 12 46 46 H 1.09008 * 109.46881 * 54.99975 * 17 14 12 47 47 H 1.08998 * 109.46768 * 300.00203 * 18 17 14 48 48 H 1.08998 * 109.46787 * 60.00323 * 18 17 14 49 49 H 0.97004 * 119.99580 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1257 6 7 4.0644 2.8206 0.0056 7 6 3.3664 3.7250 0.9548 8 6 4.3335 4.9297 1.0729 9 6 5.7263 4.2598 1.0360 10 6 5.4989 2.8963 0.3573 11 7 1.6523 2.0975 -1.2518 12 6 0.4350 2.6644 -1.3668 13 8 -0.3396 2.6320 -0.4342 14 6 0.0365 3.3387 -2.6543 15 1 0.3962 2.7509 -3.4988 16 7 -1.4274 3.4439 -2.7192 17 6 0.6513 4.7386 -2.7085 18 6 0.3511 5.3753 -4.0670 19 6 0.9573 6.7540 -4.1205 20 1 1.5025 7.1376 -3.2708 21 6 0.8167 7.5253 -5.2547 22 7 0.1532 7.0579 -6.2896 23 14 1.5687 9.2339 -5.3214 24 1 2.2577 9.5220 -4.0379 25 1 2.5483 9.3005 -6.4354 26 1 0.4972 10.2379 -5.5437 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8499 1.0377 1.0959 33 1 3.9954 0.8312 -0.6661 34 1 2.4055 4.0413 0.5490 35 1 3.2357 3.2403 1.9224 36 1 4.1827 5.4543 2.0164 37 1 4.2093 5.6081 0.2290 38 1 6.1059 4.1199 2.0481 39 1 6.4206 4.8627 0.4506 40 1 5.7554 2.0913 1.0460 41 1 6.1068 2.8210 -0.5443 42 1 2.2718 2.1232 -1.9978 43 1 -1.8546 2.5304 -2.7500 44 1 -1.7856 3.9849 -1.9464 45 1 0.2244 5.3539 -1.9165 46 1 1.7304 4.6671 -2.5712 47 1 0.7781 4.7600 -4.8589 48 1 -0.7278 5.4468 -4.2042 49 1 0.0546 7.6004 -7.0877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592143767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:56 Heat of formation + Delta-G solvation = -54.242712 kcal Electronic energy + Delta-G solvation = -25565.356872 eV Core-core repulsion = 22140.207086 eV Total energy + Delta-G solvation = -3425.149786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20624 -38.88893 -36.26496 -34.94687 -32.74697 -32.20306 -32.09062 -30.00941 -29.07484 -27.88632 -26.18278 -23.88271 -23.33870 -21.65354 -20.92425 -20.72465 -20.12437 -19.69855 -17.10667 -16.49490 -16.14861 -16.08633 -16.01792 -15.42462 -14.82184 -14.47076 -14.31786 -14.18670 -13.78421 -13.54967 -13.32967 -13.10572 -12.75233 -12.54094 -12.25716 -12.20297 -11.92134 -11.67632 -11.56455 -11.43131 -11.36685 -11.16449 -11.00554 -10.87288 -10.84758 -10.69713 -10.57418 -10.45328 -9.97204 -9.71053 -9.29499 -8.92840 -8.82697 -8.60089 -8.27869 -8.11682 -5.89013 -3.90425 2.92284 3.36887 3.37919 3.44349 3.48384 3.78893 4.35781 4.53052 4.54396 4.73437 4.80638 4.89643 4.99774 5.00736 5.08821 5.16110 5.22011 5.31481 5.39579 5.42269 5.46786 5.46871 5.63321 5.63979 5.67933 5.70729 5.82868 5.86580 5.87611 5.95367 6.00157 6.06744 6.10685 6.35552 6.55746 6.62942 6.70734 6.75621 6.86425 7.18655 7.49020 7.77907 7.82870 7.87854 8.03057 8.19424 8.49224 8.54904 9.17962 9.72412 11.22051 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.011805 B = 0.004569 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.276762 B = 6126.356172 C = 8011.015355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.144 3.856 4 H 0.085 0.915 5 C 0.038 3.962 6 N -0.509 5.509 7 C 0.036 3.964 8 C -0.125 4.125 9 C -0.130 4.130 10 C 0.036 3.964 11 N -0.710 5.710 12 C 0.485 3.515 13 O -0.555 6.555 14 C 0.078 3.922 15 H 0.094 0.906 16 N -0.808 5.808 17 C -0.093 4.093 18 C 0.031 3.969 19 C -0.518 4.518 20 H 0.052 0.948 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.887 3.113 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.405 0.595 43 H 0.332 0.668 44 H 0.347 0.653 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.012 0.988 48 H 0.033 0.967 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 -14.102 15.099 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.038 3.962 4 H 0.103 0.897 5 C -0.091 4.091 6 N -0.234 5.234 7 C -0.091 4.091 8 C -0.163 4.163 9 C -0.169 4.169 10 C -0.092 4.092 11 N -0.362 5.362 12 C 0.271 3.729 13 O -0.433 6.433 14 C -0.037 4.037 15 H 0.112 0.888 16 N -0.335 5.335 17 C -0.131 4.131 18 C -0.006 4.006 19 C -0.557 4.557 20 H 0.070 0.930 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.715 3.285 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.240 0.760 43 H 0.143 0.857 44 H 0.160 0.840 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.030 0.970 48 H 0.052 0.948 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.146 -13.537 14.350 21.343 hybrid contribution 0.964 0.071 1.337 1.650 sum 9.111 -13.465 15.688 22.592 Atomic orbital electron populations 1.21762 0.94635 1.00278 1.03219 1.21923 0.97362 0.95948 1.01882 1.21020 0.92849 0.93292 0.89011 0.89720 1.22628 0.94644 0.90839 1.01006 1.64791 1.02710 1.06677 1.49180 1.23236 0.98765 0.93206 0.93940 1.22491 0.93817 0.97541 1.02484 1.22385 0.98098 0.96061 1.00312 1.22879 0.90026 0.96797 0.99487 1.46015 1.16901 1.57304 1.16004 1.22579 0.81249 0.77177 0.91928 1.90638 1.51727 1.59807 1.41178 1.21803 0.90264 0.99336 0.92339 0.88794 1.59001 1.02853 1.20261 1.51414 1.21619 0.98375 0.90614 1.02478 1.19012 0.98236 0.94157 0.89184 1.21324 1.33793 1.00678 0.99856 0.92970 1.24985 0.95504 0.97985 0.95874 1.69991 1.41694 1.37080 1.04533 0.86619 0.78998 0.84996 0.77856 1.19869 1.21151 1.21123 0.93820 0.92369 0.92237 0.91779 0.91660 0.93608 0.90004 0.89578 0.94197 0.91222 0.90133 0.91839 0.90874 0.94101 0.90204 0.75974 0.85672 0.83953 0.93155 0.92548 0.96981 0.94823 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.51 37.16 0.32 -1.33 16 2 C -0.13 -1.28 5.61 -26.73 -0.15 -1.43 16 3 C 0.14 1.55 1.75 -67.93 -0.12 1.43 16 4 H 0.08 1.09 6.52 -51.93 -0.34 0.75 16 5 C 0.04 0.35 4.58 -3.82 -0.02 0.33 16 6 N -0.51 -5.44 5.12 -230.45 -1.18 -6.62 16 7 C 0.04 0.41 5.13 -1.90 -0.01 0.40 16 8 C -0.13 -1.32 7.06 -24.87 -0.18 -1.50 16 9 C -0.13 -1.17 6.93 -25.37 -0.18 -1.34 16 10 C 0.04 0.33 6.70 -2.76 -0.02 0.31 16 11 N -0.71 -8.73 4.75 -53.81 -0.26 -8.99 16 12 C 0.48 7.32 5.64 -10.99 -0.06 7.26 16 13 O -0.56 -9.50 13.39 5.56 0.07 -9.43 16 14 C 0.08 1.32 3.15 -68.86 -0.22 1.10 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 16 N -0.81 -13.71 8.44 -5.65 -0.05 -13.76 16 17 C -0.09 -1.89 4.78 -26.73 -0.13 -2.01 16 18 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 19 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 20 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 23 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 29 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.38 7.81 -51.93 -0.41 -0.02 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.19 7.76 -51.93 -0.40 0.79 16 35 H 0.04 0.43 8.00 -51.93 -0.42 0.01 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.41 4.73 8.60 -40.82 -0.35 4.38 16 43 H 0.33 4.91 9.06 -39.29 -0.36 4.56 16 44 H 0.35 5.99 8.58 -39.29 -0.34 5.65 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -31.39 382.16 -10.38 -41.76 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -9.14 Total: 10.45 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.30 Total: -9.63 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.75 Total: -55.82 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.39 -10.38 -41.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592143767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.480 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds