Wall clock time and date at job start Fri Apr 10 2020 17:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 H 1.08996 * 109.47116 * 55.00215 * 3 2 1 5 5 C 1.53002 * 109.47013 * 175.00240 * 3 2 1 6 6 N 1.46902 * 109.47105 * 174.99963 * 5 3 2 7 7 C 1.48531 * 110.99760 * 52.60383 * 6 5 3 8 8 C 1.54937 * 103.22500 * 159.72030 * 7 6 5 9 9 C 1.54591 * 102.92135 * 322.58590 * 8 7 6 10 10 C 1.47895 * 110.99757 * 170.00300 * 6 5 3 11 11 N 1.46498 * 109.46951 * 295.00446 * 3 2 1 12 12 C 1.34776 * 120.00147 * 85.00363 * 11 3 2 13 13 O 1.21280 * 119.99986 * 359.97438 * 12 11 3 14 14 C 1.50697 * 119.99978 * 179.97438 * 12 11 3 15 15 H 1.08999 * 109.47706 * 39.99937 * 14 12 11 16 16 N 1.46906 * 109.47064 * 159.99732 * 14 12 11 17 17 C 1.52998 * 109.47319 * 279.99616 * 14 12 11 18 18 C 1.53005 * 109.47314 * 175.00069 * 17 14 12 19 19 C 1.50701 * 109.47071 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00249 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00086 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99505 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00277 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47146 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47404 * 120.00133 * 23 21 19 26 26 H 1.48508 * 109.46918 * 240.00175 * 23 21 19 27 27 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46636 * 299.99583 * 1 2 3 29 29 H 1.08999 * 109.47402 * 59.99498 * 1 2 3 30 30 H 1.09002 * 109.46636 * 240.00417 * 2 1 3 31 31 H 1.08995 * 109.47514 * 120.00014 * 2 1 3 32 32 H 1.08994 * 109.47183 * 295.00295 * 5 3 2 33 33 H 1.09007 * 109.46833 * 55.00216 * 5 3 2 34 34 H 1.09004 * 110.67147 * 278.15614 * 7 6 5 35 35 H 1.09006 * 110.66710 * 41.28404 * 7 6 5 36 36 H 1.09005 * 110.72428 * 204.22854 * 8 7 6 37 37 H 1.08991 * 110.72303 * 80.94687 * 8 7 6 38 38 H 1.08998 * 110.31413 * 263.04314 * 9 8 7 39 39 H 1.09000 * 110.30833 * 140.87391 * 9 8 7 40 40 H 1.09002 * 109.91910 * 333.50780 * 10 6 5 41 41 H 1.08994 * 109.91982 * 94.60880 * 10 6 5 42 42 H 0.97004 * 119.99788 * 264.99722 * 11 3 2 43 43 H 1.00896 * 111.00309 * 296.04459 * 16 14 12 44 44 H 1.00902 * 110.99923 * 60.00622 * 16 14 12 45 45 H 1.09002 * 109.47460 * 295.00664 * 17 14 12 46 46 H 1.09008 * 109.46881 * 54.99975 * 17 14 12 47 47 H 1.08998 * 109.46768 * 300.00203 * 18 17 14 48 48 H 1.08998 * 109.46787 * 60.00323 * 18 17 14 49 49 H 0.97004 * 119.99580 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1257 6 7 4.0644 2.8206 0.0056 7 6 3.3664 3.7250 0.9548 8 6 4.3335 4.9297 1.0729 9 6 5.7263 4.2598 1.0360 10 6 5.4989 2.8963 0.3573 11 7 1.6523 2.0975 -1.2518 12 6 0.4350 2.6644 -1.3668 13 8 -0.3396 2.6320 -0.4342 14 6 0.0365 3.3387 -2.6543 15 1 0.3962 2.7509 -3.4988 16 7 -1.4274 3.4439 -2.7192 17 6 0.6513 4.7386 -2.7085 18 6 0.3511 5.3753 -4.0670 19 6 0.9573 6.7540 -4.1205 20 1 1.5025 7.1376 -3.2708 21 6 0.8167 7.5253 -5.2547 22 7 0.1532 7.0579 -6.2896 23 14 1.5687 9.2339 -5.3214 24 1 2.2577 9.5220 -4.0379 25 1 2.5483 9.3005 -6.4354 26 1 0.4972 10.2379 -5.5437 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8499 1.0377 1.0959 33 1 3.9954 0.8312 -0.6661 34 1 2.4055 4.0413 0.5490 35 1 3.2357 3.2403 1.9224 36 1 4.1827 5.4543 2.0164 37 1 4.2093 5.6081 0.2290 38 1 6.1059 4.1199 2.0481 39 1 6.4206 4.8627 0.4506 40 1 5.7554 2.0913 1.0460 41 1 6.1068 2.8210 -0.5443 42 1 2.2718 2.1232 -1.9978 43 1 -1.8546 2.5304 -2.7500 44 1 -1.7856 3.9849 -1.9464 45 1 0.2244 5.3539 -1.9165 46 1 1.7304 4.6671 -2.5712 47 1 0.7781 4.7600 -4.8589 48 1 -0.7278 5.4468 -4.2042 49 1 0.0546 7.6004 -7.0877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592143767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:56 Heat of formation + Delta-G solvation = -77.374975 kcal Electronic energy + Delta-G solvation = -25566.359962 eV Core-core repulsion = 22140.207086 eV Total energy + Delta-G solvation = -3426.152876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31391 -39.80946 -37.36183 -36.45602 -34.77520 -33.24497 -32.88917 -31.88281 -29.87127 -28.86213 -27.86987 -25.45242 -24.33999 -22.68280 -22.24445 -21.64778 -21.14197 -21.03535 -18.62909 -18.02650 -17.42560 -17.09844 -16.94560 -16.70426 -16.43158 -15.90452 -15.55646 -15.13589 -14.88561 -14.59517 -14.42199 -14.27734 -14.12523 -13.77697 -13.53736 -13.46162 -13.33938 -12.98542 -12.80955 -12.52662 -12.46671 -12.33793 -12.21587 -12.15014 -12.00195 -11.84039 -11.71492 -11.67820 -11.54503 -11.45564 -11.18175 -10.90144 -10.47534 -9.89521 -9.55114 -9.34990 -8.12186 -6.22042 1.41759 1.42516 1.55117 1.67473 2.30714 2.46049 2.99717 3.20848 3.56272 3.64948 3.75363 3.90839 3.98163 4.07063 4.09802 4.17823 4.19977 4.31213 4.38817 4.40054 4.53551 4.58291 4.61866 4.71803 4.83876 4.84649 4.89724 4.94471 4.98022 4.99583 5.02457 5.07049 5.17431 5.20254 5.29781 5.30968 5.43031 5.59133 5.62166 5.87076 5.92104 6.01058 6.09703 6.15765 6.33215 6.53973 6.65993 6.96533 7.32154 7.45872 8.99362 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.011805 B = 0.004569 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.276762 B = 6126.356172 C = 8011.015355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.146 3.854 4 H 0.063 0.937 5 C 0.043 3.957 6 N -0.527 5.527 7 C 0.040 3.960 8 C -0.128 4.128 9 C -0.126 4.126 10 C 0.036 3.964 11 N -0.697 5.697 12 C 0.493 3.507 13 O -0.575 6.575 14 C 0.085 3.915 15 H 0.102 0.898 16 N -0.819 5.819 17 C -0.075 4.075 18 C 0.041 3.959 19 C -0.540 4.540 20 H 0.053 0.947 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.958 3.042 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.280 1.280 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.410 0.590 43 H 0.345 0.655 44 H 0.344 0.656 45 H 0.037 0.963 46 H 0.063 0.937 47 H -0.009 1.009 48 H 0.004 0.996 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 -14.989 16.177 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.040 3.960 4 H 0.081 0.919 5 C -0.085 4.085 6 N -0.251 5.251 7 C -0.088 4.088 8 C -0.166 4.166 9 C -0.164 4.164 10 C -0.091 4.091 11 N -0.348 5.348 12 C 0.278 3.722 13 O -0.455 6.455 14 C -0.031 4.031 15 H 0.120 0.880 16 N -0.348 5.348 17 C -0.113 4.113 18 C 0.003 3.997 19 C -0.578 4.578 20 H 0.072 0.928 21 C -0.195 4.195 22 N -0.571 5.571 23 Si 0.783 3.217 24 H -0.189 1.189 25 H -0.202 1.202 26 H -0.206 1.206 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.246 0.754 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.010 0.990 48 H 0.023 0.977 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.227 -14.452 15.436 23.489 hybrid contribution 0.304 0.318 0.996 1.089 sum 10.531 -14.133 16.432 24.097 Atomic orbital electron populations 1.21707 0.96219 1.00532 1.01181 1.21891 0.95775 0.95186 1.03596 1.21116 0.94185 0.93546 0.87104 0.91871 1.22631 0.92981 0.90374 1.02522 1.64759 1.03655 1.07379 1.49339 1.23092 0.97572 0.93899 0.94202 1.22480 0.94989 0.97114 1.02006 1.22382 0.96859 0.95820 1.01354 1.22917 0.88881 0.97348 1.00000 1.45917 1.15746 1.56278 1.16891 1.22017 0.82033 0.77477 0.90709 1.90637 1.52579 1.60857 1.41456 1.21574 0.90167 0.97417 0.93932 0.88015 1.58966 1.03101 1.21264 1.51457 1.21299 0.98947 0.92318 0.98762 1.18817 0.95880 0.93522 0.91444 1.21742 1.33977 1.02020 1.00067 0.92831 1.25884 0.95866 1.02358 0.95425 1.70119 1.42886 1.38868 1.05209 0.85502 0.78252 0.79565 0.78335 1.18859 1.20241 1.20634 0.92387 0.94218 0.94439 0.90476 0.89416 0.91859 0.88485 0.92733 0.93401 0.90300 0.92392 0.90187 0.90795 0.92422 0.90074 0.75367 0.84232 0.84277 0.94373 0.91881 0.99012 0.97727 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 71.98 0.61 -2.47 16 2 C -0.13 -2.13 5.61 30.60 0.17 -1.96 16 3 C 0.15 2.90 1.75 44.99 0.08 2.98 16 4 H 0.06 1.58 6.52 -2.39 -0.02 1.57 16 5 C 0.04 0.68 4.58 86.30 0.40 1.07 16 6 N -0.53 -10.31 5.12 -883.01 -4.52 -14.83 16 7 C 0.04 0.89 5.13 86.65 0.44 1.33 16 8 C -0.13 -2.61 7.06 31.80 0.22 -2.38 16 9 C -0.13 -2.00 6.93 31.47 0.22 -1.78 16 10 C 0.04 0.57 6.70 86.45 0.58 1.15 16 11 N -0.70 -16.57 4.75 -442.54 -2.10 -18.67 16 12 C 0.49 14.91 5.64 87.66 0.49 15.41 16 13 O -0.57 -19.96 13.39 -3.03 -0.04 -20.00 16 14 C 0.08 2.89 3.15 44.17 0.14 3.03 16 15 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 16 N -0.82 -28.48 8.44 -171.80 -1.45 -29.93 16 17 C -0.07 -3.12 4.78 30.60 0.15 -2.98 16 18 C 0.04 2.16 4.86 29.85 0.15 2.31 16 19 C -0.54 -31.31 9.11 25.60 0.23 -31.07 16 20 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 21 C 0.00 0.13 5.46 84.65 0.46 0.60 16 22 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 23 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 29 H 0.04 0.99 5.64 -2.39 -0.01 0.97 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.06 0.82 7.81 -2.39 -0.02 0.80 16 33 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.05 1.54 7.76 -2.39 -0.02 1.52 16 35 H 0.05 0.96 8.00 -2.38 -0.02 0.94 16 36 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 0.73 7.57 -2.39 -0.02 0.71 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.41 9.05 8.60 -92.71 -0.80 8.25 16 43 H 0.34 10.33 9.06 -89.70 -0.81 9.52 16 44 H 0.34 12.25 8.58 -89.69 -0.77 11.49 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 47 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 48 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 49 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -68.65 382.16 -2.90 -71.55 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -1.45 Total: 36.72 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 4.34 Total: -14.77 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -7.79 Total: -120.67 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.04 Total: -20.00 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.65 -2.90 -71.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592143767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.822 kcal (2) G-P(sol) polarization free energy of solvation -68.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds