Wall clock time and date at job start Fri Apr 10 2020 17:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46891 * 109.47095 * 2 1 4 4 C 1.46905 * 110.99988 * 66.04337 * 3 2 1 5 5 C 1.53004 * 109.46625 * 58.75748 * 4 3 2 6 6 C 1.46899 * 111.00491 * 190.00044 * 3 2 1 7 7 C 1.52996 * 109.47461 * 163.81481 * 6 3 2 8 8 H 1.08995 * 110.87240 * 59.98175 * 7 6 3 9 9 C 1.55139 * 110.99009 * 296.13339 * 7 6 3 10 10 C 1.54323 * 103.01591 * 206.25566 * 9 7 6 11 11 N 1.47444 * 107.23532 * 22.28431 * 10 9 7 12 12 C 1.46900 * 110.99747 * 123.25873 * 11 10 9 13 13 C 1.50699 * 109.47064 * 69.87269 * 12 11 10 14 14 O 1.21278 * 120.00506 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99535 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99494 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46646 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00272 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99856 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99817 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00119 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47124 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47192 * 300.00299 * 21 19 17 24 24 H 1.48506 * 109.46871 * 60.00096 * 21 19 17 25 25 C 1.47840 * 108.56718 * 0.98894 * 11 10 9 26 26 H 1.09005 * 109.46906 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46969 * 299.99270 * 1 2 3 28 28 H 1.08995 * 109.47011 * 60.00056 * 1 2 3 29 29 H 1.09005 * 109.46933 * 240.00100 * 2 1 3 30 30 H 1.08995 * 109.47011 * 119.99944 * 2 1 3 31 31 H 1.09000 * 109.47059 * 178.75022 * 4 3 2 32 32 H 1.08990 * 109.47352 * 298.75606 * 4 3 2 33 33 H 1.08998 * 109.46597 * 179.55758 * 5 4 3 34 34 H 1.08998 * 109.46597 * 299.55144 * 5 4 3 35 35 H 1.08993 * 109.47369 * 59.55676 * 5 4 3 36 36 H 1.09001 * 109.46803 * 43.81362 * 6 3 2 37 37 H 1.09001 * 109.47023 * 283.82102 * 6 3 2 38 38 H 1.09000 * 110.70524 * 87.87854 * 9 7 6 39 39 H 1.08996 * 110.85814 * 324.70760 * 9 7 6 40 40 H 1.09004 * 109.88647 * 262.87759 * 10 9 7 41 41 H 1.09002 * 110.01974 * 141.77162 * 10 9 7 42 42 H 1.08998 * 109.47382 * 309.87241 * 12 11 10 43 43 H 1.09001 * 109.46713 * 189.87420 * 12 11 10 44 44 H 0.96994 * 119.99948 * 359.97438 * 15 13 12 45 45 H 1.08993 * 109.47477 * 60.00132 * 16 15 13 46 46 H 1.09001 * 109.46573 * 299.99492 * 16 15 13 47 47 H 0.96996 * 119.99620 * 179.97438 * 20 19 17 48 48 H 1.09000 * 110.37189 * 94.73323 * 25 11 10 49 49 H 1.08997 * 110.37853 * 217.07431 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6701 2.0669 1.2533 5 6 2.2760 1.3056 2.4342 6 6 3.4685 1.4312 -0.2381 7 6 3.8758 2.8528 -0.6306 8 1 3.6275 3.5602 0.1605 9 6 3.2197 3.2680 -1.9737 10 6 4.2002 4.3231 -2.5278 11 7 5.5064 4.0851 -1.8867 12 6 6.5537 3.8624 -2.8924 13 6 6.8338 5.1521 -3.6199 14 8 6.2217 6.1579 -3.3289 15 7 7.7653 5.1881 -4.5933 16 6 8.0380 6.4421 -5.3001 17 6 9.1123 6.2136 -6.3320 18 1 9.5487 5.2326 -6.4492 19 6 9.5382 7.2570 -7.1264 20 7 9.0073 8.4516 -6.9833 21 14 10.8704 6.9740 -8.4050 22 1 11.1467 8.2449 -9.1215 23 1 12.1093 6.5053 -7.7337 24 1 10.4145 5.9468 -9.3758 25 6 5.3825 2.9208 -0.9840 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0637 3.0832 1.2359 32 1 0.5859 2.0988 1.3594 33 1 2.0232 1.8160 3.3635 34 1 1.8765 0.2917 2.4562 35 1 3.3596 1.2669 2.3240 36 1 3.7264 0.7438 -1.0439 37 1 3.9955 1.1399 0.6704 38 1 2.2369 3.7074 -1.8029 39 1 3.1475 2.4163 -2.6500 40 1 3.8443 5.3242 -2.2840 41 1 4.2924 4.2156 -3.6086 42 1 6.2188 3.1087 -3.6050 43 1 7.4631 3.5182 -2.3999 44 1 8.2557 4.3840 -4.8253 45 1 8.3728 7.1956 -4.5873 46 1 7.1288 6.7864 -5.7929 47 1 9.3072 9.1857 -7.5419 48 1 5.6939 2.0097 -1.4950 49 1 5.9770 3.0738 -0.0834 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743862188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:06 Heat of formation + Delta-G solvation = -33.008447 kcal Electronic energy + Delta-G solvation = -24260.609702 eV Core-core repulsion = 20836.380703 eV Total energy + Delta-G solvation = -3424.228999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.80564 -38.75613 -37.54936 -34.10006 -32.96652 -32.26051 -31.55705 -30.11378 -28.79866 -27.81155 -26.03974 -24.79967 -23.81379 -22.45878 -20.96533 -20.67432 -19.83701 -19.32505 -16.95897 -16.81632 -16.33003 -15.84778 -15.74815 -15.35911 -14.82523 -14.65411 -14.51187 -14.12515 -13.71741 -13.45151 -13.34160 -13.09099 -12.95639 -12.60750 -12.54851 -12.39257 -12.19821 -11.88732 -11.83507 -11.73891 -11.57234 -11.40294 -11.16805 -11.06649 -10.96858 -10.88602 -10.83258 -10.70412 -10.45108 -10.28585 -9.37606 -8.94426 -8.69370 -8.55234 -8.11258 -7.79798 -6.13566 -4.20427 3.26805 3.31433 3.33017 3.48160 3.51846 3.83927 4.29255 4.43823 4.53470 4.60473 4.70462 4.77654 4.84390 4.90650 4.95187 5.06023 5.17762 5.20859 5.22030 5.23811 5.29828 5.36154 5.42845 5.48531 5.50498 5.58711 5.64313 5.65761 5.68783 5.69944 5.73953 5.79925 5.96506 5.98795 6.11734 6.17811 6.43678 6.77243 6.79254 7.07931 7.10990 7.37756 7.51722 7.57188 7.72145 8.01150 8.69925 8.83733 9.20521 9.46435 10.96593 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.042287 B = 0.002184 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.989181 B =12815.616390 C =12893.810271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.532 5.532 4 C 0.045 3.955 5 C -0.194 4.194 6 C 0.061 3.939 7 C -0.090 4.090 8 H 0.083 0.917 9 C -0.121 4.121 10 C 0.050 3.950 11 N -0.509 5.509 12 C 0.031 3.969 13 C 0.498 3.502 14 O -0.537 6.537 15 N -0.718 5.718 16 C 0.252 3.748 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.285 1.285 23 H -0.275 1.275 24 H -0.276 1.276 25 C 0.048 3.952 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.388 0.612 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.266 0.734 48 H 0.045 0.955 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.000 -19.151 16.005 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.253 4.253 6 C -0.067 4.067 7 C -0.109 4.109 8 H 0.102 0.898 9 C -0.159 4.159 10 C -0.078 4.078 11 N -0.233 5.233 12 C -0.101 4.101 13 C 0.281 3.719 14 O -0.414 6.414 15 N -0.367 5.367 16 C 0.131 3.869 17 C -0.582 4.582 18 H 0.080 0.920 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.080 4.080 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.221 0.779 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.513 -17.501 16.001 27.802 hybrid contribution 1.275 -1.610 -0.678 2.162 sum -13.238 -19.111 15.323 27.844 Atomic orbital electron populations 1.21781 0.94926 1.01364 1.02523 1.22134 0.96139 0.89230 1.00739 1.62214 1.13743 1.15596 1.34010 1.22217 1.00912 0.98351 0.86839 1.22427 1.01701 1.01338 0.99831 1.22109 0.87581 0.96860 1.00119 1.22248 0.94172 0.96085 0.98438 0.89826 1.22692 0.99212 0.98470 0.95554 1.22822 0.87796 0.99827 0.97350 1.63256 1.05196 1.36861 1.18017 1.22216 0.97113 0.96101 0.94628 1.20309 0.80883 0.89973 0.80691 1.90654 1.49850 1.35614 1.65315 1.46450 1.38687 1.15016 1.36577 1.19056 0.96213 0.80549 0.91048 1.21203 1.21390 0.96370 1.19195 0.92003 1.24963 0.96856 0.94877 0.97394 1.69969 1.42067 1.00736 1.39501 0.86473 0.81711 0.77545 0.81154 1.21085 1.20087 1.20102 1.23057 0.96017 0.91880 0.97085 0.92540 0.92719 0.91806 0.91059 0.94509 0.90352 0.90586 0.92070 0.92461 0.92316 0.91024 0.94080 0.90604 0.91877 0.90007 0.92998 0.92456 0.88641 0.77940 0.95605 0.95699 0.92418 0.93702 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.84 37.16 0.37 -0.54 16 2 C 0.05 0.31 5.40 -3.83 -0.02 0.29 16 3 N -0.53 -4.17 4.42 -234.63 -1.04 -5.21 16 4 C 0.04 0.32 5.69 -3.82 -0.02 0.30 16 5 C -0.19 -1.23 9.26 37.16 0.34 -0.88 16 6 C 0.06 0.49 4.32 -3.83 -0.02 0.47 16 7 C -0.09 -0.87 2.99 -88.48 -0.26 -1.14 16 8 H 0.08 0.86 6.78 -51.93 -0.35 0.51 16 9 C -0.12 -1.33 6.18 -24.91 -0.15 -1.49 16 10 C 0.05 0.72 5.65 -2.83 -0.02 0.70 16 11 N -0.51 -7.52 4.85 -232.69 -1.13 -8.65 16 12 C 0.03 0.47 5.03 -4.98 -0.03 0.44 16 13 C 0.50 10.24 7.47 -10.98 -0.08 10.15 16 14 O -0.54 -13.33 15.55 5.56 0.09 -13.25 16 15 N -0.72 -15.44 5.55 -61.47 -0.34 -15.78 16 16 C 0.25 6.82 5.43 -5.19 -0.03 6.79 16 17 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 18 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 21 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.05 0.52 6.15 -2.30 -0.01 0.51 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.33 6.58 -51.93 -0.34 -0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.48 7.86 -51.93 -0.41 0.08 16 30 H 0.04 0.24 5.97 -51.93 -0.31 -0.07 16 31 H 0.08 0.61 6.58 -51.93 -0.34 0.27 16 32 H 0.08 0.52 6.53 -51.93 -0.34 0.18 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 6.28 -51.93 -0.33 0.03 16 35 H 0.06 0.40 6.28 -51.93 -0.33 0.07 16 36 H 0.07 0.57 7.80 -51.93 -0.41 0.17 16 37 H 0.04 0.31 5.97 -51.93 -0.31 0.00 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.05 0.81 7.31 -51.93 -0.38 0.43 16 42 H 0.06 0.75 7.96 -51.93 -0.41 0.34 16 43 H 0.10 1.23 8.07 -51.93 -0.42 0.82 16 44 H 0.39 7.11 8.32 -40.82 -0.34 6.77 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.04 0.44 7.70 -51.93 -0.40 0.04 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -32.28 377.73 -10.11 -42.39 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.75 Total: 2.45 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.35 Total: 2.01 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -1.77 Total: -55.31 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.28 -10.11 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743862188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.379 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds