Wall clock time and date at job start Fri Apr 10 2020 17:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46891 * 109.47095 * 2 1 4 4 C 1.46905 * 110.99988 * 66.04337 * 3 2 1 5 5 C 1.53004 * 109.46625 * 58.75748 * 4 3 2 6 6 C 1.46899 * 111.00491 * 190.00044 * 3 2 1 7 7 C 1.52996 * 109.47461 * 163.81481 * 6 3 2 8 8 H 1.08995 * 110.87240 * 59.98175 * 7 6 3 9 9 C 1.55139 * 110.99009 * 296.13339 * 7 6 3 10 10 C 1.54323 * 103.01591 * 206.25566 * 9 7 6 11 11 N 1.47444 * 107.23532 * 22.28431 * 10 9 7 12 12 C 1.46900 * 110.99747 * 123.25873 * 11 10 9 13 13 C 1.50699 * 109.47064 * 69.87269 * 12 11 10 14 14 O 1.21278 * 120.00506 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99535 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99494 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46646 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00272 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99856 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99817 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00119 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47124 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47192 * 300.00299 * 21 19 17 24 24 H 1.48506 * 109.46871 * 60.00096 * 21 19 17 25 25 C 1.47840 * 108.56718 * 0.98894 * 11 10 9 26 26 H 1.09005 * 109.46906 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46969 * 299.99270 * 1 2 3 28 28 H 1.08995 * 109.47011 * 60.00056 * 1 2 3 29 29 H 1.09005 * 109.46933 * 240.00100 * 2 1 3 30 30 H 1.08995 * 109.47011 * 119.99944 * 2 1 3 31 31 H 1.09000 * 109.47059 * 178.75022 * 4 3 2 32 32 H 1.08990 * 109.47352 * 298.75606 * 4 3 2 33 33 H 1.08998 * 109.46597 * 179.55758 * 5 4 3 34 34 H 1.08998 * 109.46597 * 299.55144 * 5 4 3 35 35 H 1.08993 * 109.47369 * 59.55676 * 5 4 3 36 36 H 1.09001 * 109.46803 * 43.81362 * 6 3 2 37 37 H 1.09001 * 109.47023 * 283.82102 * 6 3 2 38 38 H 1.09000 * 110.70524 * 87.87854 * 9 7 6 39 39 H 1.08996 * 110.85814 * 324.70760 * 9 7 6 40 40 H 1.09004 * 109.88647 * 262.87759 * 10 9 7 41 41 H 1.09002 * 110.01974 * 141.77162 * 10 9 7 42 42 H 1.08998 * 109.47382 * 309.87241 * 12 11 10 43 43 H 1.09001 * 109.46713 * 189.87420 * 12 11 10 44 44 H 0.96994 * 119.99948 * 359.97438 * 15 13 12 45 45 H 1.08993 * 109.47477 * 60.00132 * 16 15 13 46 46 H 1.09001 * 109.46573 * 299.99492 * 16 15 13 47 47 H 0.96996 * 119.99620 * 179.97438 * 20 19 17 48 48 H 1.09000 * 110.37189 * 94.73323 * 25 11 10 49 49 H 1.08997 * 110.37853 * 217.07431 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6701 2.0669 1.2533 5 6 2.2760 1.3056 2.4342 6 6 3.4685 1.4312 -0.2381 7 6 3.8758 2.8528 -0.6306 8 1 3.6275 3.5602 0.1605 9 6 3.2197 3.2680 -1.9737 10 6 4.2002 4.3231 -2.5278 11 7 5.5064 4.0851 -1.8867 12 6 6.5537 3.8624 -2.8924 13 6 6.8338 5.1521 -3.6199 14 8 6.2217 6.1579 -3.3289 15 7 7.7653 5.1881 -4.5933 16 6 8.0380 6.4421 -5.3001 17 6 9.1123 6.2136 -6.3320 18 1 9.5487 5.2326 -6.4492 19 6 9.5382 7.2570 -7.1264 20 7 9.0073 8.4516 -6.9833 21 14 10.8704 6.9740 -8.4050 22 1 11.1467 8.2449 -9.1215 23 1 12.1093 6.5053 -7.7337 24 1 10.4145 5.9468 -9.3758 25 6 5.3825 2.9208 -0.9840 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0637 3.0832 1.2359 32 1 0.5859 2.0988 1.3594 33 1 2.0232 1.8160 3.3635 34 1 1.8765 0.2917 2.4562 35 1 3.3596 1.2669 2.3240 36 1 3.7264 0.7438 -1.0439 37 1 3.9955 1.1399 0.6704 38 1 2.2369 3.7074 -1.8029 39 1 3.1475 2.4163 -2.6500 40 1 3.8443 5.3242 -2.2840 41 1 4.2924 4.2156 -3.6086 42 1 6.2188 3.1087 -3.6050 43 1 7.4631 3.5182 -2.3999 44 1 8.2557 4.3840 -4.8253 45 1 8.3728 7.1956 -4.5873 46 1 7.1288 6.7864 -5.7929 47 1 9.3072 9.1857 -7.5419 48 1 5.6939 2.0097 -1.4950 49 1 5.9770 3.0738 -0.0834 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743862188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:05 Heat of formation + Delta-G solvation = -57.256698 kcal Electronic energy + Delta-G solvation = -24261.661185 eV Core-core repulsion = 20836.380703 eV Total energy + Delta-G solvation = -3425.280482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.96206 -39.91674 -38.59250 -36.08902 -34.35049 -33.87924 -32.10705 -31.02399 -29.84472 -29.36168 -27.41924 -25.51055 -24.67332 -24.22998 -22.15433 -21.45704 -21.19993 -20.30943 -18.82585 -17.61399 -17.44584 -17.21199 -16.86044 -16.63806 -16.36894 -15.93759 -15.69873 -15.19461 -14.75026 -14.65824 -14.33380 -14.20715 -14.03060 -13.85742 -13.63278 -13.48510 -13.23356 -13.05471 -12.92823 -12.88772 -12.66493 -12.57701 -12.30105 -12.23541 -12.18597 -11.94742 -11.82813 -11.72557 -11.52237 -11.50655 -11.17962 -10.78731 -10.67335 -9.79896 -9.23020 -9.10619 -8.28658 -6.45721 1.42857 1.47423 1.55614 1.82764 2.28966 2.48788 2.97390 3.05705 3.14590 3.75141 3.82773 3.88556 4.05974 4.10368 4.21668 4.33138 4.34126 4.35811 4.40963 4.43278 4.48285 4.56886 4.63380 4.68388 4.70697 4.76380 4.82151 4.92022 5.04528 5.07475 5.11706 5.13777 5.16896 5.18474 5.24512 5.25750 5.29335 5.44125 5.49255 5.49750 5.70526 5.85419 5.97497 6.08554 6.22874 6.25097 6.65480 6.97419 7.23943 7.55909 8.83381 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.042287 B = 0.002184 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.989181 B =12815.616390 C =12893.810271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 N -0.544 5.544 4 C 0.045 3.955 5 C -0.188 4.188 6 C 0.069 3.931 7 C -0.080 4.080 8 H 0.075 0.925 9 C -0.107 4.107 10 C 0.051 3.949 11 N -0.536 5.536 12 C 0.046 3.954 13 C 0.492 3.508 14 O -0.587 6.587 15 N -0.711 5.711 16 C 0.269 3.731 17 C -0.557 4.557 18 H 0.085 0.915 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.987 3.013 22 H -0.286 1.286 23 H -0.261 1.261 24 H -0.261 1.261 25 C 0.050 3.950 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.035 0.965 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.408 0.592 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.269 0.731 48 H 0.067 0.933 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.052 -22.508 16.237 30.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 N -0.268 5.268 4 C -0.083 4.083 5 C -0.247 4.247 6 C -0.059 4.059 7 C -0.100 4.100 8 H 0.093 0.907 9 C -0.146 4.146 10 C -0.076 4.076 11 N -0.261 5.261 12 C -0.085 4.085 13 C 0.279 3.721 14 O -0.467 6.467 15 N -0.363 5.363 16 C 0.146 3.854 17 C -0.594 4.594 18 H 0.103 0.897 19 C -0.199 4.199 20 N -0.570 5.570 21 Si 0.810 3.190 22 H -0.211 1.211 23 H -0.186 1.186 24 H -0.186 1.186 25 C -0.077 4.077 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.104 0.896 43 H 0.145 0.855 44 H 0.243 0.757 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.567 -20.925 16.258 29.770 hybrid contribution 0.902 -0.513 -0.688 1.245 sum -12.665 -21.439 15.570 29.367 Atomic orbital electron populations 1.21753 0.94620 1.01926 1.01979 1.22159 0.96369 0.88572 1.01076 1.62195 1.13677 1.16414 1.34466 1.22194 1.01057 0.97950 0.87084 1.22362 1.01356 1.01397 0.99560 1.22014 0.87851 0.95377 1.00696 1.22164 0.93373 0.97217 0.97220 0.90680 1.22564 0.98140 0.97488 0.96371 1.22691 0.89072 0.99411 0.96461 1.63149 1.04945 1.39543 1.18443 1.22126 0.98704 0.92609 0.95033 1.21437 0.79222 0.91605 0.79836 1.90634 1.51351 1.38172 1.66573 1.46191 1.39511 1.13890 1.36665 1.18480 0.94463 0.82096 0.90346 1.21603 1.21274 0.97514 1.19035 0.89707 1.26120 0.99511 0.94338 0.99882 1.70144 1.43973 1.02021 1.40879 0.85177 0.78320 0.77614 0.77914 1.21146 1.18578 1.18577 1.23128 0.96799 0.91172 0.96584 0.91448 0.92722 0.92858 0.90891 0.93920 0.91315 0.90421 0.91672 0.92096 0.92601 0.90380 0.93192 0.90860 0.90921 0.93264 0.94676 0.89629 0.85548 0.75650 0.99793 0.99818 0.92270 0.91472 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.84 71.98 0.71 -0.83 16 2 C 0.05 0.52 5.40 86.31 0.47 0.99 16 3 N -0.54 -7.49 4.42 -896.24 -3.97 -11.46 16 4 C 0.04 0.58 5.69 86.30 0.49 1.07 16 5 C -0.19 -2.02 9.26 71.98 0.67 -1.36 16 6 C 0.07 0.92 4.32 86.30 0.37 1.29 16 7 C -0.08 -1.42 2.99 -9.41 -0.03 -1.45 16 8 H 0.07 1.48 6.78 -2.39 -0.02 1.46 16 9 C -0.11 -2.27 6.18 31.78 0.20 -2.08 16 10 C 0.05 1.52 5.65 86.65 0.49 2.01 16 11 N -0.54 -15.29 4.85 -890.09 -4.32 -19.61 16 12 C 0.05 1.30 5.03 85.56 0.43 1.73 16 13 C 0.49 20.49 7.47 87.66 0.66 21.15 16 14 O -0.59 -30.60 15.55 -3.02 -0.05 -30.65 16 15 N -0.71 -30.85 5.55 -466.78 -2.59 -33.44 16 16 C 0.27 15.20 5.43 85.63 0.46 15.66 16 17 C -0.56 -30.75 9.28 25.60 0.24 -30.52 16 18 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 19 C 0.00 0.05 5.46 84.66 0.46 0.52 16 20 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 21 Si 0.99 42.70 29.54 68.60 2.03 44.73 16 22 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 C 0.05 0.97 6.15 86.78 0.53 1.50 16 26 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.05 0.57 6.58 -2.39 -0.02 0.56 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.81 7.86 -2.38 -0.02 0.79 16 30 H 0.04 0.44 5.97 -2.39 -0.01 0.43 16 31 H 0.07 1.02 6.58 -2.39 -0.02 1.00 16 32 H 0.08 0.97 6.53 -2.39 -0.02 0.95 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.61 6.28 -2.39 -0.01 0.60 16 35 H 0.06 0.64 6.28 -2.39 -0.02 0.62 16 36 H 0.08 0.98 7.80 -2.39 -0.02 0.96 16 37 H 0.05 0.61 5.97 -2.39 -0.01 0.59 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.03 1.12 7.31 -2.39 -0.02 1.11 16 42 H 0.09 1.97 7.96 -2.39 -0.02 1.95 16 43 H 0.13 2.81 8.07 -2.39 -0.02 2.79 16 44 H 0.41 14.35 8.32 -92.71 -0.77 13.58 16 45 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 46 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 47 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 48 H 0.07 1.02 7.70 -2.39 -0.02 1.01 16 49 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -73.66 377.73 -2.32 -75.98 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.15 Total: 21.69 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.15 Total: 9.70 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -10.59 Total: -121.44 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.66 -2.32 -75.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743862188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.719 kcal (2) G-P(sol) polarization free energy of solvation -73.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds