Wall clock time and date at job start Fri Apr 10 2020 17:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46747 * 2 1 4 4 N 1.46898 * 109.47168 * 180.02562 * 3 2 1 5 5 C 1.46905 * 110.99943 * 293.96010 * 4 3 2 6 6 C 1.46891 * 111.00511 * 169.99997 * 4 3 2 7 7 C 1.53001 * 109.47367 * 284.22008 * 6 4 3 8 8 H 1.08998 * 110.27312 * 53.74016 * 7 6 4 9 9 C 1.54595 * 110.30548 * 291.54294 * 7 6 4 10 10 C 1.54931 * 102.92252 * 219.12354 * 9 7 6 11 11 N 1.48532 * 103.22690 * 37.41978 * 10 9 7 12 12 C 1.46906 * 111.00079 * 200.27999 * 11 10 9 13 13 C 1.50696 * 109.46743 * 287.39163 * 12 11 10 14 14 O 1.21281 * 120.00179 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99966 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00229 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.47101 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00444 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00098 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00150 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99932 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47115 * 89.99411 * 21 19 17 23 23 H 1.48500 * 109.46921 * 209.99864 * 21 19 17 24 24 H 1.48506 * 109.46679 * 329.99776 * 21 19 17 25 25 C 1.47907 * 105.82069 * 320.79214 * 11 10 9 26 26 H 1.09000 * 109.47810 * 59.99927 * 1 2 3 27 27 H 1.09002 * 109.47478 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47513 * 299.99711 * 1 2 3 29 29 H 1.08993 * 109.47186 * 119.99854 * 2 1 3 30 30 H 1.08995 * 109.46889 * 240.00507 * 2 1 3 31 31 H 1.09002 * 109.47660 * 300.00166 * 3 2 1 32 32 H 1.09004 * 109.47113 * 60.00380 * 3 2 1 33 33 H 1.08998 * 109.47422 * 65.36283 * 5 4 3 34 34 H 1.09004 * 109.47150 * 185.36699 * 5 4 3 35 35 H 1.09000 * 109.46955 * 305.36370 * 5 4 3 36 36 H 1.09001 * 109.47123 * 44.21973 * 6 4 3 37 37 H 1.09002 * 109.47386 * 164.21596 * 6 4 3 38 38 H 1.09000 * 110.72967 * 337.48567 * 9 7 6 39 39 H 1.09008 * 110.72121 * 100.76848 * 9 7 6 40 40 H 1.09002 * 110.66921 * 278.98106 * 10 9 7 41 41 H 1.09000 * 110.66813 * 155.84755 * 10 9 7 42 42 H 1.08993 * 109.46861 * 47.39626 * 12 11 10 43 43 H 1.08997 * 109.46927 * 167.39685 * 12 11 10 44 44 H 0.96999 * 119.99264 * 0.02562 * 15 13 12 45 45 H 1.08995 * 109.47275 * 300.00393 * 16 15 13 46 46 H 1.09008 * 109.46769 * 60.00036 * 16 15 13 47 47 H 0.97001 * 120.00056 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.91435 * 265.98114 * 25 11 10 49 49 H 1.08992 * 109.92096 * 144.68032 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0359 0.8855 1.2524 6 6 4.0352 2.7932 -0.2388 7 6 3.8866 3.1446 -1.7204 8 1 2.8533 3.0079 -2.0392 9 6 4.8342 2.2730 -2.5762 10 6 5.3434 3.2666 -3.6503 11 7 5.4919 4.5369 -2.8950 12 6 5.4999 5.6916 -3.8031 13 6 6.8064 5.7317 -4.5531 14 8 7.6478 4.8818 -4.3513 15 7 7.0394 6.7115 -5.4489 16 6 8.3093 6.7502 -6.1784 17 6 8.3175 7.9347 -7.1099 18 1 7.4626 8.5932 -7.1538 19 6 9.4170 8.1785 -7.9054 20 7 9.4240 9.2120 -8.7187 21 14 10.8961 7.0401 -7.8289 22 1 10.7312 5.9471 -8.8206 23 1 12.1285 7.8083 -8.1391 24 1 11.0041 6.4599 -6.4662 25 6 4.3366 4.5955 -1.9733 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 3.7663 -0.1682 1.3233 34 1 5.1213 0.9846 1.2659 35 1 3.6111 1.4269 2.0977 36 1 3.4781 3.5115 0.3627 37 1 5.0888 2.8267 0.0387 38 1 5.6620 1.8978 -1.9744 39 1 4.2888 1.4506 -3.0393 40 1 4.6109 3.3778 -4.4498 41 1 6.3043 2.9422 -4.0498 42 1 4.6767 5.6021 -4.5118 43 1 5.3842 6.6088 -3.2257 44 1 6.3663 7.3909 -5.6104 45 1 9.1327 6.8398 -5.4699 46 1 8.4247 5.8327 -6.7556 47 1 10.1973 9.3833 -9.2786 48 1 3.5251 5.1615 -2.4307 49 1 4.6342 5.0610 -1.0339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747963258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:12 Heat of formation + Delta-G solvation = -35.895614 kcal Electronic energy + Delta-G solvation = -24085.758349 eV Core-core repulsion = 20661.404153 eV Total energy + Delta-G solvation = -3424.354196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75996 -38.64591 -37.45680 -34.25366 -33.83442 -32.42634 -32.16372 -29.57786 -28.50409 -27.36604 -26.82170 -25.25085 -22.79599 -22.12480 -21.35487 -20.93492 -20.01869 -19.76832 -17.35713 -16.41385 -16.11958 -15.97642 -15.64117 -15.42456 -15.03307 -14.71449 -14.55253 -14.31152 -13.80715 -13.72986 -13.42715 -13.33901 -12.87203 -12.78078 -12.56813 -12.35491 -12.23434 -12.13966 -11.98802 -11.81550 -11.64599 -11.28470 -11.25308 -11.09924 -10.99362 -10.95437 -10.78511 -10.72758 -10.47313 -9.94794 -9.47475 -9.12183 -8.75671 -8.62676 -8.31237 -8.07422 -6.19973 -4.21971 3.27687 3.32321 3.34999 3.44451 3.52609 3.72849 4.32267 4.35768 4.47457 4.60940 4.62055 4.67433 4.71603 5.00243 5.02058 5.08095 5.15184 5.15978 5.24880 5.27299 5.29012 5.32395 5.37858 5.44307 5.44979 5.53488 5.54714 5.58609 5.62082 5.67395 5.73550 5.81238 5.86869 5.91980 6.06412 6.22670 6.27564 6.75174 6.76645 6.81430 6.94998 7.00635 7.11089 7.29073 7.43052 8.17819 8.56273 8.77916 9.02175 9.40675 10.91959 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.002232 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.478013 B =12542.771140 C =12741.180763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.053 3.947 4 N -0.541 5.541 5 C 0.024 3.976 6 C 0.065 3.935 7 C -0.091 4.091 8 H 0.073 0.927 9 C -0.100 4.100 10 C 0.033 3.967 11 N -0.495 5.495 12 C 0.027 3.973 13 C 0.502 3.498 14 O -0.540 6.540 15 N -0.710 5.710 16 C 0.222 3.778 17 C -0.543 4.543 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 C 0.039 3.961 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.395 0.605 45 H 0.025 0.975 46 H 0.019 0.981 47 H 0.267 0.733 48 H 0.044 0.956 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 -15.492 18.869 30.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.265 5.265 5 C -0.125 4.125 6 C -0.063 4.063 7 C -0.111 4.111 8 H 0.091 0.909 9 C -0.138 4.138 10 C -0.095 4.095 11 N -0.220 5.220 12 C -0.105 4.105 13 C 0.286 3.714 14 O -0.417 6.417 15 N -0.360 5.360 16 C 0.100 3.900 17 C -0.581 4.581 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.531 5.531 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.185 1.185 25 C -0.089 4.089 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.228 0.772 45 H 0.042 0.958 46 H 0.037 0.963 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.483 -16.264 18.764 29.804 hybrid contribution -0.621 0.581 -0.008 0.851 sum -17.103 -15.683 18.756 29.837 Atomic orbital electron populations 1.21744 0.95725 1.01760 1.01744 1.21529 0.95280 0.96454 1.02654 1.22226 0.87325 0.97192 1.00703 1.61923 1.07438 1.22443 1.34657 1.22425 1.00435 1.00088 0.89516 1.22224 1.00408 0.88181 0.95445 1.21970 0.99700 0.94267 0.95156 0.90903 1.22375 0.98469 0.96702 0.96273 1.23384 1.01532 0.89433 0.95109 1.64499 1.39619 1.01330 1.16513 1.22189 0.96256 0.96103 0.95955 1.20324 0.88574 0.82258 0.80275 1.90635 1.46932 1.38787 1.65377 1.46169 1.20776 1.28327 1.40697 1.19452 0.81613 0.97395 0.91530 1.21108 1.04335 1.10480 1.22179 0.90296 1.24806 0.98337 0.95133 0.94411 1.69883 1.30756 1.27797 1.24615 0.86808 0.82154 0.80978 0.79709 1.19873 1.20922 1.18451 1.22921 0.91910 0.96319 0.97792 0.92627 0.92556 0.92976 0.92104 0.91093 0.90743 0.95119 0.91287 0.91326 0.95863 0.94780 0.90171 0.90590 0.91238 0.94353 0.88729 0.92118 0.88346 0.77201 0.95751 0.96296 0.92291 0.93773 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.78 5.86 -26.73 -0.16 -0.93 16 3 C 0.05 0.38 4.79 -3.83 -0.02 0.36 16 4 N -0.54 -4.44 4.54 -242.92 -1.10 -5.54 16 5 C 0.02 0.17 9.23 60.07 0.55 0.72 16 6 C 0.07 0.56 4.09 -3.83 -0.02 0.55 16 7 C -0.09 -0.86 3.06 -89.26 -0.27 -1.13 16 8 H 0.07 0.65 6.69 -51.93 -0.35 0.30 16 9 C -0.10 -1.10 6.46 -24.87 -0.16 -1.26 16 10 C 0.03 0.45 5.93 -1.90 -0.01 0.44 16 11 N -0.50 -6.95 4.91 -231.90 -1.14 -8.08 16 12 C 0.03 0.38 5.19 -4.97 -0.03 0.35 16 13 C 0.50 9.73 7.66 -10.98 -0.08 9.65 16 14 O -0.54 -12.52 15.06 5.56 0.08 -12.44 16 15 N -0.71 -14.57 5.55 -61.48 -0.34 -14.91 16 16 C 0.22 5.56 4.50 -5.20 -0.02 5.53 16 17 C -0.54 -15.05 9.83 -34.44 -0.34 -15.39 16 18 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 21 Si 0.88 21.70 27.47 -169.99 -4.67 17.04 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 25 C 0.04 0.41 6.33 -2.75 -0.02 0.39 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.38 6.67 -51.93 -0.35 0.03 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.55 6.58 -51.93 -0.34 0.21 16 32 H 0.03 0.22 8.07 -51.93 -0.42 -0.20 16 33 H 0.07 0.45 6.73 -51.93 -0.35 0.10 16 34 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 35 H 0.02 0.16 8.07 -51.93 -0.42 -0.26 16 36 H 0.03 0.28 8.00 -51.93 -0.42 -0.14 16 37 H 0.08 0.76 7.62 -51.93 -0.40 0.36 16 38 H 0.08 0.91 7.78 -51.93 -0.40 0.50 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.04 0.49 7.81 -51.93 -0.41 0.09 16 41 H 0.09 1.55 7.10 -51.93 -0.37 1.18 16 42 H 0.06 0.76 7.83 -51.93 -0.41 0.35 16 43 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 44 H 0.39 7.08 8.32 -40.82 -0.34 6.74 16 45 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 46 H 0.02 0.50 7.57 -51.92 -0.39 0.10 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.04 0.42 7.77 -51.93 -0.40 0.01 16 49 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -32.13 380.83 -10.00 -42.13 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -9.05 Total: 1.07 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.30 Total: 0.92 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.81 Total: -54.45 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.44 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.13 -10.00 -42.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747963258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.231 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds