Wall clock time and date at job start Fri Apr 10 2020 17:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99879 * 2 1 4 4 H 1.48501 * 109.46971 * 269.99889 * 3 2 1 5 5 H 1.48504 * 109.47365 * 29.99689 * 3 2 1 6 6 H 1.48497 * 109.47418 * 150.00217 * 3 2 1 7 7 C 1.38944 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00307 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99861 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99872 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99938 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99931 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.46975 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00016 * 180.02562 * 13 12 10 15 15 O 1.21599 * 119.99657 * 359.97438 * 14 13 12 16 16 C 1.47464 * 120.00207 * 179.97438 * 14 13 12 17 17 C 1.40193 * 120.20383 * 270.00073 * 16 14 13 18 18 O 1.35662 * 120.14355 * 0.25380 * 17 16 14 19 19 C 1.38635 * 119.71416 * 179.97438 * 17 16 14 20 20 C 1.38140 * 120.12156 * 359.97438 * 19 17 16 21 21 C 1.38428 * 120.41110 * 359.97438 * 20 19 17 22 22 C 1.38012 * 120.28986 * 0.04142 * 21 20 19 23 23 Cl 1.73602 * 120.06927 * 180.02562 * 22 21 20 24 24 H 0.96997 * 120.00183 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99872 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46567 * 60.00850 * 12 10 9 27 27 H 1.08998 * 109.47061 * 300.00746 * 12 10 9 28 28 H 0.96997 * 120.00612 * 0.02562 * 13 12 10 29 29 H 0.96704 * 113.99701 * 269.72001 * 18 17 16 30 30 H 1.08005 * 119.93828 * 180.02562 * 19 17 16 31 31 H 1.07995 * 119.79553 * 180.02562 * 20 19 17 32 32 H 1.08008 * 119.85864 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5608 -2.3705 -0.0001 13 7 6.0491 -3.7517 0.0007 14 6 7.3742 -3.9980 0.0005 15 8 8.1643 -3.0737 -0.0010 16 6 7.8657 -5.3883 0.0019 17 6 8.1013 -6.0518 1.2142 18 8 7.8732 -5.4193 2.3925 19 6 8.5629 -7.3590 1.2037 20 6 8.7891 -8.0047 0.0036 21 6 8.5571 -7.3548 -1.1964 22 6 8.0979 -6.0533 -1.2058 23 17 7.8083 -5.2439 -2.7140 24 1 -0.4850 0.8400 0.0004 25 1 3.8648 -0.3632 -0.0011 26 1 5.9247 -1.8556 0.8890 27 1 5.9234 -1.8577 -0.8910 28 1 5.4188 -4.4890 0.0015 29 1 8.6401 -4.9419 2.7375 30 1 8.7453 -7.8737 2.1355 31 1 9.1483 -9.0232 0.0016 32 1 8.7366 -7.8683 -2.1295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804819770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:30 Heat of formation + Delta-G solvation = -89.223148 kcal Electronic energy + Delta-G solvation = -20925.626916 eV Core-core repulsion = 17298.618390 eV Total energy + Delta-G solvation = -3627.008527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.055 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63242 -39.08128 -38.11974 -37.41535 -36.37938 -34.54226 -33.76144 -31.83142 -31.54299 -30.23491 -27.90706 -24.78044 -23.55409 -23.01897 -20.59688 -19.68687 -18.99492 -18.60518 -17.73965 -16.67366 -16.23014 -16.11879 -15.35778 -15.27142 -15.06471 -14.74438 -14.70237 -13.90047 -13.66981 -13.45343 -13.16808 -12.97111 -12.49614 -12.31973 -12.17984 -12.04073 -11.63723 -11.32693 -11.23450 -11.12074 -10.64138 -10.07701 -10.01550 -9.69469 -9.25479 -9.03836 -8.94744 -8.77158 -8.30032 -6.40159 -3.92735 0.56804 0.69340 1.76859 2.54347 2.95047 2.99858 3.04504 3.12440 3.24719 3.56337 3.78320 4.03958 4.41542 4.51534 4.61720 4.68588 4.84748 5.11182 5.14400 5.23774 5.61860 5.67935 5.74615 5.77734 5.80586 5.86016 6.14474 6.47579 7.25230 7.43953 7.62527 8.00055 8.22152 8.45812 8.82232 9.30150 9.63695 10.72043 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.024525 B = 0.003535 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.398267 B = 7919.951234 C = 8196.877499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.106 3.894 13 N -0.689 5.689 14 C 0.569 3.431 15 O -0.537 6.537 16 C -0.142 4.142 17 C 0.156 3.844 18 O -0.486 6.486 19 C -0.144 4.144 20 C -0.077 4.077 21 C -0.122 4.122 22 C 0.009 3.991 23 Cl -0.046 7.046 24 H 0.275 0.725 25 H 0.374 0.626 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.414 0.586 29 H 0.399 0.601 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.322 -12.621 0.117 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.022 4.022 13 N -0.342 5.342 14 C 0.354 3.646 15 O -0.415 6.415 16 C -0.146 4.146 17 C 0.110 3.890 18 O -0.297 6.297 19 C -0.162 4.162 20 C -0.095 4.095 21 C -0.141 4.141 22 C -0.019 4.019 23 Cl -0.017 7.017 24 H 0.086 0.914 25 H 0.207 0.793 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.253 0.747 29 H 0.257 0.743 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 19.617 -12.652 -0.072 23.344 hybrid contribution 0.622 1.362 -0.040 1.498 sum 20.240 -11.290 -0.112 23.176 Atomic orbital electron populations 1.69619 1.05704 1.27800 1.48208 1.25060 0.95529 0.98146 0.97148 0.86673 0.79917 0.83783 0.79134 1.19394 1.19971 1.19228 1.19446 0.78930 0.96821 1.48615 0.86063 1.42110 1.07700 1.06074 1.65492 1.19590 0.87942 0.84939 0.85087 1.90552 1.69109 1.30875 1.55480 1.21031 0.94027 0.83606 1.03506 1.45613 1.06490 1.09489 1.72607 1.17718 0.82656 0.87603 0.76670 1.90804 1.55565 1.44735 1.50367 1.20209 1.06109 0.95549 0.92763 1.18265 0.95787 0.90955 0.84001 1.84788 1.40990 1.69677 1.34237 1.21497 1.00685 0.94391 0.99637 1.21116 0.97362 1.00079 0.90991 1.21046 1.00747 0.92492 0.99812 1.20809 1.00948 0.93430 0.86665 1.98425 1.94221 1.79140 1.29873 0.91389 0.79253 0.89449 0.89484 0.74710 0.74270 0.84041 0.84100 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.11 13.96 55.50 0.77 -24.33 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 7 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 N -0.58 -13.55 5.09 -10.96 -0.06 -13.61 16 10 C 0.44 9.84 7.85 -10.98 -0.09 9.76 16 11 O -0.58 -14.90 15.24 5.55 0.08 -14.81 16 12 C 0.11 1.89 6.15 -5.20 -0.03 1.86 16 13 N -0.69 -11.83 5.52 -62.55 -0.35 -12.17 16 14 C 0.57 9.26 5.84 -12.50 -0.07 9.19 16 15 O -0.54 -9.91 17.11 5.28 0.09 -9.81 16 16 C -0.14 -1.90 5.64 -104.82 -0.59 -2.49 16 17 C 0.16 1.76 6.72 -38.70 -0.26 1.50 16 18 O -0.49 -5.34 12.95 -18.69 -0.24 -5.58 16 19 C -0.14 -1.19 9.97 -39.47 -0.39 -1.58 16 20 C -0.08 -0.55 10.03 -39.55 -0.40 -0.94 16 21 C -0.12 -1.06 9.81 -39.59 -0.39 -1.45 16 22 C 0.01 0.11 6.35 -39.08 -0.25 -0.14 16 23 Cl -0.05 -0.59 28.04 -51.86 -1.45 -2.04 16 24 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 27 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.41 7.33 7.42 -40.82 -0.30 7.03 16 29 H 0.40 2.69 9.06 45.56 0.41 3.10 16 30 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -34.29 308.81 -5.72 -40.01 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -1.79 Total: 15.26 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -2.72 Total: 8.05 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.37 Total: -50.12 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.07 Total: -30.21 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.45 Total: -2.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.29 -5.72 -40.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804819770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.215 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds