Wall clock time and date at job start Fri Apr 10 2020 17:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99879 * 2 1 4 4 H 1.48501 * 109.46971 * 269.99889 * 3 2 1 5 5 H 1.48504 * 109.47365 * 29.99689 * 3 2 1 6 6 H 1.48497 * 109.47418 * 150.00217 * 3 2 1 7 7 C 1.38944 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00307 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99861 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99872 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99938 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99931 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.46975 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00016 * 180.02562 * 13 12 10 15 15 O 1.21599 * 119.99657 * 359.97438 * 14 13 12 16 16 C 1.47464 * 120.00207 * 179.97438 * 14 13 12 17 17 C 1.40193 * 120.20383 * 270.00073 * 16 14 13 18 18 O 1.35662 * 120.14355 * 0.25380 * 17 16 14 19 19 C 1.38635 * 119.71416 * 179.97438 * 17 16 14 20 20 C 1.38140 * 120.12156 * 359.97438 * 19 17 16 21 21 C 1.38428 * 120.41110 * 359.97438 * 20 19 17 22 22 C 1.38012 * 120.28986 * 0.04142 * 21 20 19 23 23 Cl 1.73602 * 120.06927 * 180.02562 * 22 21 20 24 24 H 0.96997 * 120.00183 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99872 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46567 * 60.00850 * 12 10 9 27 27 H 1.08998 * 109.47061 * 300.00746 * 12 10 9 28 28 H 0.96997 * 120.00612 * 0.02562 * 13 12 10 29 29 H 0.96704 * 113.99701 * 269.72001 * 18 17 16 30 30 H 1.08005 * 119.93828 * 180.02562 * 19 17 16 31 31 H 1.07995 * 119.79553 * 180.02562 * 20 19 17 32 32 H 1.08008 * 119.85864 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5608 -2.3705 -0.0001 13 7 6.0491 -3.7517 0.0007 14 6 7.3742 -3.9980 0.0005 15 8 8.1643 -3.0737 -0.0010 16 6 7.8657 -5.3883 0.0019 17 6 8.1013 -6.0518 1.2142 18 8 7.8732 -5.4193 2.3925 19 6 8.5629 -7.3590 1.2037 20 6 8.7891 -8.0047 0.0036 21 6 8.5571 -7.3548 -1.1964 22 6 8.0979 -6.0533 -1.2058 23 17 7.8083 -5.2439 -2.7140 24 1 -0.4850 0.8400 0.0004 25 1 3.8648 -0.3632 -0.0011 26 1 5.9247 -1.8556 0.8890 27 1 5.9234 -1.8577 -0.8910 28 1 5.4188 -4.4890 0.0015 29 1 8.6401 -4.9419 2.7375 30 1 8.7453 -7.8737 2.1355 31 1 9.1483 -9.0232 0.0016 32 1 8.7366 -7.8683 -2.1295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804819770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:30 Heat of formation + Delta-G solvation = -117.939382 kcal Electronic energy + Delta-G solvation = -20926.872146 eV Core-core repulsion = 17298.618390 eV Total energy + Delta-G solvation = -3628.253756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.64282 -40.54987 -39.57807 -38.23717 -37.19951 -36.33541 -35.40064 -33.86585 -32.44421 -30.97620 -29.43510 -26.49989 -24.67475 -23.76274 -21.75479 -21.53143 -20.64024 -19.70518 -18.96725 -17.62561 -17.54581 -17.23231 -16.89731 -16.67706 -16.53643 -16.02846 -15.51696 -15.25166 -15.15504 -14.83433 -14.36059 -14.26647 -14.06511 -13.76099 -13.63454 -12.99098 -12.91111 -12.46777 -12.43639 -12.23155 -12.01642 -11.97226 -11.60724 -11.21933 -10.70793 -10.37838 -10.28974 -10.05250 -9.77453 -8.47366 -6.09760 -0.20668 -0.01361 0.91456 1.29227 1.31630 1.33426 1.42628 1.75628 1.89282 2.18995 2.36639 2.80240 3.06028 3.08429 3.45637 3.88723 3.95656 3.97427 4.21861 4.28781 4.34206 4.40092 4.58127 4.97288 5.08816 5.12426 5.21357 5.45857 5.55918 5.85335 6.28472 6.45993 6.61380 6.75422 6.91763 7.25824 7.74774 8.69134 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.024525 B = 0.003535 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.398267 B = 7919.951234 C = 8196.877499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.233 1.233 7 C -0.333 4.333 8 H 0.063 0.937 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.117 3.883 13 N -0.696 5.696 14 C 0.575 3.425 15 O -0.563 6.563 16 C -0.176 4.176 17 C 0.145 3.855 18 O -0.502 6.502 19 C -0.136 4.136 20 C -0.058 4.058 21 C -0.119 4.119 22 C -0.008 4.008 23 Cl -0.066 7.066 24 H 0.282 0.718 25 H 0.392 0.608 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.411 0.589 29 H 0.414 0.586 30 H 0.171 0.829 31 H 0.185 0.815 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.330 -13.027 0.548 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.462 4.462 8 H 0.081 0.919 9 N -0.215 5.215 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.010 4.010 13 N -0.348 5.348 14 C 0.362 3.638 15 O -0.443 6.443 16 C -0.180 4.180 17 C 0.099 3.901 18 O -0.316 6.316 19 C -0.155 4.155 20 C -0.076 4.076 21 C -0.138 4.138 22 C -0.035 4.035 23 Cl -0.037 7.037 24 H 0.092 0.908 25 H 0.228 0.772 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.248 0.752 29 H 0.275 0.725 30 H 0.188 0.812 31 H 0.202 0.798 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 22.662 -13.069 0.365 26.163 hybrid contribution -0.316 1.283 -0.137 1.328 sum 22.345 -11.786 0.228 25.264 Atomic orbital electron populations 1.69780 1.08033 1.29523 1.49102 1.26069 0.96439 1.02584 0.95598 0.85442 0.79583 0.76973 0.80106 1.18064 1.19643 1.15607 1.19032 0.80896 0.95319 1.50930 0.91931 1.41901 1.06166 1.07312 1.66164 1.20428 0.89895 0.83951 0.82526 1.90536 1.70686 1.32379 1.56387 1.20953 0.89919 0.84823 1.05343 1.45708 1.07061 1.08869 1.73182 1.18126 0.81714 0.88823 0.75185 1.90770 1.55901 1.46096 1.51495 1.20147 1.08949 0.94464 0.94448 1.18521 0.96277 0.92074 0.83218 1.84743 1.42469 1.70135 1.34207 1.21854 0.99156 0.92965 1.01487 1.21646 0.94871 1.01482 0.89614 1.21427 0.99454 0.91128 1.01766 1.21024 1.02447 0.94651 0.85401 1.98411 1.94498 1.79807 1.31006 0.90848 0.77178 0.87384 0.87609 0.75169 0.72550 0.81201 0.79774 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.79 13.96 21.66 0.30 -54.49 16 2 C -0.01 -0.37 5.50 84.92 0.47 0.10 16 3 Si 0.96 38.49 27.74 68.60 1.90 40.39 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 7 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 8 H 0.06 4.27 7.39 -2.91 -0.02 4.24 16 9 N -0.58 -27.11 5.09 -306.98 -1.56 -28.67 16 10 C 0.44 20.17 7.85 87.66 0.69 20.85 16 11 O -0.61 -32.98 15.24 -3.07 -0.05 -33.03 16 12 C 0.12 4.07 6.15 85.64 0.53 4.60 16 13 N -0.70 -23.88 5.52 -470.08 -2.60 -26.47 16 14 C 0.58 18.56 5.84 86.67 0.51 19.06 16 15 O -0.56 -20.53 17.11 -4.03 -0.07 -20.60 16 16 C -0.18 -4.59 5.64 -19.99 -0.11 -4.70 16 17 C 0.15 3.03 6.72 22.84 0.15 3.19 16 18 O -0.50 -10.48 12.95 -89.78 -1.16 -11.64 16 19 C -0.14 -1.78 9.97 22.34 0.22 -1.56 16 20 C -0.06 -0.58 10.03 22.29 0.22 -0.35 16 21 C -0.12 -1.73 9.81 22.26 0.22 -1.51 16 22 C -0.01 -0.18 6.35 22.60 0.14 -0.03 16 23 Cl -0.07 -1.69 28.04 -2.72 -0.08 -1.76 16 24 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.39 15.47 5.76 -92.71 -0.53 14.94 16 26 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 27 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.41 14.86 7.42 -92.71 -0.69 14.17 16 29 H 0.41 5.16 9.06 -74.05 -0.67 4.49 16 30 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -79.35 308.81 -0.15 -79.50 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.73 Total: 35.49 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 3.89 Total: 21.28 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -3.86 Total: -109.63 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -1.28 Total: -65.27 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.76 kcal Total: -79.35 -0.15 -79.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804819770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.441 kcal (2) G-P(sol) polarization free energy of solvation -79.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds