Wall clock time and date at job start Fri Apr 10 2020 17:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47309 * 214.51692 * 3 2 1 5 5 C 1.36938 * 120.00588 * 263.95321 * 4 3 2 6 6 H 1.07994 * 120.00560 * 142.63297 * 5 4 3 7 7 C 1.38818 * 119.99193 * 322.62598 * 5 4 3 8 8 N 1.31620 * 119.99402 * 157.68013 * 7 5 4 9 9 Si 1.86795 * 120.00240 * 337.67485 * 7 5 4 10 10 H 1.48507 * 109.46829 * 95.72471 * 9 7 5 11 11 H 1.48499 * 109.46844 * 215.72078 * 9 7 5 12 12 H 1.48498 * 109.47428 * 335.72291 * 9 7 5 13 13 C 1.46501 * 119.99617 * 83.94190 * 4 3 2 14 14 C 1.53001 * 109.46698 * 90.00543 * 13 4 3 15 15 N 1.46503 * 109.47242 * 179.97438 * 14 13 4 16 16 C 1.34411 * 126.81717 * 124.99808 * 15 14 13 17 17 N 1.30838 * 108.09620 * 180.02562 * 16 15 14 18 18 C 1.33298 * 109.82299 * 0.02562 * 17 16 15 19 19 Br 1.89099 * 125.53829 * 179.97438 * 18 17 16 20 20 N 1.30774 * 108.91955 * 359.97438 * 18 17 16 21 21 H 4.40638 * 5.51423 * 180.02562 * 4 1 2 22 22 H 1.09007 * 109.46690 * 94.52237 * 3 2 1 23 23 H 1.08996 * 109.47506 * 334.52354 * 3 2 1 24 24 H 0.97008 * 120.00092 * 180.02562 * 8 7 5 25 25 H 1.09001 * 109.47839 * 330.00735 * 13 4 3 26 26 H 1.09004 * 109.47379 * 209.99964 * 13 4 3 27 27 H 1.08997 * 109.47400 * 60.00016 * 14 13 4 28 28 H 1.08995 * 109.47310 * 299.99867 * 14 13 4 29 29 H 1.07999 * 125.94892 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1389 0.7826 5 6 3.4794 2.3049 0.1532 6 1 3.2610 3.2549 0.6182 7 6 4.1107 2.2658 -1.0825 8 7 4.0550 3.3090 -1.8831 9 14 5.0392 0.7328 -1.6089 10 1 4.1559 -0.1174 -2.4470 11 1 6.2379 1.1250 -2.3928 12 1 5.4617 -0.0277 -0.4055 13 6 3.2518 1.0298 2.2388 14 6 4.6456 0.5122 2.6001 15 7 4.7639 0.4036 4.0563 16 6 5.1096 -0.6901 4.7570 17 7 5.0996 -0.3786 6.0277 18 6 4.7531 0.8999 6.1770 19 35 4.5984 1.8113 7.8266 20 7 4.5376 1.4214 4.9973 21 1 -1.0501 -0.0003 0.0000 22 1 3.0093 0.0819 -1.0246 23 1 3.0098 -0.9269 0.4420 24 1 4.4957 3.2816 -2.7469 25 1 2.4986 0.3368 2.6136 26 1 3.1001 2.0103 2.6902 27 1 5.3989 1.2052 2.2255 28 1 4.7974 -0.4682 2.1488 29 1 5.3533 -1.6574 4.3431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852008561.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:59 Heat of formation + Delta-G solvation = 179.170229 kcal Electronic energy + Delta-G solvation = -15863.358810 eV Core-core repulsion = 13065.853759 eV Total energy + Delta-G solvation = -2797.505051 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 298.012 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08414 -36.95923 -34.29621 -32.46488 -32.04786 -31.55931 -30.67766 -28.60087 -26.43335 -24.50203 -22.09709 -21.71463 -20.53688 -18.29792 -17.14733 -16.62905 -15.94645 -15.51799 -15.13257 -14.40926 -14.09233 -13.97125 -13.50167 -12.93169 -12.82415 -12.48762 -11.94243 -11.71691 -11.24189 -10.92298 -10.78509 -10.72409 -10.61177 -10.08840 -10.06031 -9.86794 -9.62786 -9.40793 -9.34293 -8.80411 -7.30261 -6.22581 -3.69542 0.91374 1.54189 2.49613 2.68277 3.09258 3.21658 3.26541 3.39819 3.49672 4.26454 4.33150 4.67283 4.87884 5.03231 5.09832 5.27880 5.48924 5.67010 5.78028 5.93607 6.10252 6.20135 6.27327 6.44506 6.58939 6.79712 7.74346 7.85536 8.13532 8.27462 8.67244 9.41780 9.75824 10.91979 Molecular weight = 298.01amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.003903 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.930685 B = 7173.079229 C = 7426.515827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.168 4.168 3 C 0.225 3.775 4 N -0.587 5.587 5 C -0.283 4.283 6 H 0.085 0.915 7 C 0.042 3.958 8 N -0.886 5.886 9 Si 0.871 3.129 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.266 1.266 13 C 0.144 3.856 14 C 0.096 3.904 15 N -0.350 5.350 16 C 0.253 3.747 17 N -0.530 5.530 18 C 0.204 3.796 19 Br 0.071 6.929 20 N -0.267 5.267 21 H 0.207 0.793 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.268 0.732 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 -8.242 14.651 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.170 4.170 3 C 0.101 3.899 4 N -0.307 5.307 5 C -0.411 4.411 6 H 0.102 0.898 7 C -0.160 4.160 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.209 1.209 11 H -0.222 1.222 12 H -0.191 1.191 13 C 0.017 3.983 14 C -0.027 4.027 15 N -0.141 5.141 16 C -0.044 4.044 17 N -0.259 5.259 18 C -0.156 4.156 19 Br 0.150 6.850 20 N -0.100 5.100 21 H 0.224 0.776 22 H 0.102 0.898 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.485 -7.268 15.086 16.811 hybrid contribution 0.429 -1.166 -1.138 1.685 sum 1.913 -8.434 13.948 16.411 Atomic orbital electron populations 1.24720 0.95743 1.03063 1.03055 1.24784 0.95811 0.98077 0.98363 1.18535 0.82823 0.90846 0.97727 1.44041 1.72554 1.13024 1.01119 1.18829 1.34707 0.84714 1.02857 0.89786 1.25505 0.97341 0.96518 0.96657 1.69864 1.42842 1.30863 1.08885 0.87022 0.80327 0.84005 0.78639 1.20895 1.22183 1.19077 1.21179 0.90972 1.00850 0.85316 1.23263 1.04656 1.04236 0.70564 1.50950 1.47375 1.06966 1.08833 1.26073 0.96588 0.94805 0.86917 1.70403 1.24746 1.13079 1.17689 1.25494 1.04754 0.91933 0.93407 1.96767 1.97219 1.73609 1.17387 1.78292 1.22823 1.12115 0.96750 0.77626 0.89762 0.91811 0.92234 0.93328 0.90894 0.88050 0.88488 0.75993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.40 19.25 29.55 0.57 -3.83 15 2 C -0.17 -3.35 13.66 -37.12 -0.51 -3.85 15 3 C 0.23 4.50 4.77 -6.83 -0.03 4.47 15 4 N -0.59 -12.66 2.05 -176.57 -0.36 -13.02 15 5 C -0.28 -7.35 9.92 -15.06 -0.15 -7.50 15 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 15 7 C 0.04 1.13 5.27 -17.43 -0.09 1.04 15 8 N -0.89 -25.55 13.97 55.49 0.78 -24.78 15 9 Si 0.87 19.60 25.03 -169.99 -4.25 15.34 15 10 H -0.28 -6.19 6.69 56.52 0.38 -5.82 15 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 13 C 0.14 2.63 5.89 -4.04 -0.02 2.60 15 14 C 0.10 1.48 6.87 -4.04 -0.03 1.45 15 15 N -0.35 -5.26 3.69 -62.63 -0.23 -5.49 15 16 C 0.25 3.21 12.63 -90.67 -1.14 2.06 15 17 N -0.53 -7.92 11.19 -14.21 -0.16 -8.08 15 18 C 0.20 3.22 8.69 -91.71 -0.80 2.42 15 19 Br 0.07 0.90 34.13 -68.01 -2.32 -1.42 15 20 N -0.27 -4.57 12.57 30.61 0.38 -4.18 15 21 H 0.21 2.80 7.80 -54.08 -0.42 2.38 15 22 H 0.08 1.83 3.57 -51.93 -0.19 1.64 15 23 H 0.06 1.05 8.12 -51.93 -0.42 0.63 15 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 25 H 0.05 0.83 8.07 -51.93 -0.42 0.41 15 26 H 0.07 1.46 8.04 -51.93 -0.42 1.04 15 27 H 0.10 1.72 8.14 -51.93 -0.42 1.30 15 28 H 0.10 1.24 8.09 -51.93 -0.42 0.82 15 29 H 0.22 1.68 8.06 -52.49 -0.42 1.25 15 LS Contribution 286.73 15.07 4.32 4.32 Total: -1.00 -30.54 286.73 -6.76 -37.31 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -2.71 Total: 1.14 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.21 Total: -1.14 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.41 Total: -55.55 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.25 Total: 15.34 kcal Atomic # 35 Polarization: 0.90 SS G_CDS: -2.32 Total: -1.42 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.54 -6.76 -37.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852008561.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.477 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds