Wall clock time and date at job start Fri Apr 10 2020 17:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47309 * 214.51692 * 3 2 1 5 5 C 1.36938 * 120.00588 * 263.95321 * 4 3 2 6 6 H 1.07994 * 120.00560 * 142.63297 * 5 4 3 7 7 C 1.38818 * 119.99193 * 322.62598 * 5 4 3 8 8 N 1.31620 * 119.99402 * 157.68013 * 7 5 4 9 9 Si 1.86795 * 120.00240 * 337.67485 * 7 5 4 10 10 H 1.48507 * 109.46829 * 95.72471 * 9 7 5 11 11 H 1.48499 * 109.46844 * 215.72078 * 9 7 5 12 12 H 1.48498 * 109.47428 * 335.72291 * 9 7 5 13 13 C 1.46501 * 119.99617 * 83.94190 * 4 3 2 14 14 C 1.53001 * 109.46698 * 90.00543 * 13 4 3 15 15 N 1.46503 * 109.47242 * 179.97438 * 14 13 4 16 16 C 1.34411 * 126.81717 * 124.99808 * 15 14 13 17 17 N 1.30838 * 108.09620 * 180.02562 * 16 15 14 18 18 C 1.33298 * 109.82299 * 0.02562 * 17 16 15 19 19 Br 1.89099 * 125.53829 * 179.97438 * 18 17 16 20 20 N 1.30774 * 108.91955 * 359.97438 * 18 17 16 21 21 H 4.40638 * 5.51423 * 180.02562 * 4 1 2 22 22 H 1.09007 * 109.46690 * 94.52237 * 3 2 1 23 23 H 1.08996 * 109.47506 * 334.52354 * 3 2 1 24 24 H 0.97008 * 120.00092 * 180.02562 * 8 7 5 25 25 H 1.09001 * 109.47839 * 330.00735 * 13 4 3 26 26 H 1.09004 * 109.47379 * 209.99964 * 13 4 3 27 27 H 1.08997 * 109.47400 * 60.00016 * 14 13 4 28 28 H 1.08995 * 109.47310 * 299.99867 * 14 13 4 29 29 H 1.07999 * 125.94892 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1389 0.7826 5 6 3.4794 2.3049 0.1532 6 1 3.2610 3.2549 0.6182 7 6 4.1107 2.2658 -1.0825 8 7 4.0550 3.3090 -1.8831 9 14 5.0392 0.7328 -1.6089 10 1 4.1559 -0.1174 -2.4470 11 1 6.2379 1.1250 -2.3928 12 1 5.4617 -0.0277 -0.4055 13 6 3.2518 1.0298 2.2388 14 6 4.6456 0.5122 2.6001 15 7 4.7639 0.4036 4.0563 16 6 5.1096 -0.6901 4.7570 17 7 5.0996 -0.3786 6.0277 18 6 4.7531 0.8999 6.1770 19 35 4.5984 1.8113 7.8266 20 7 4.5376 1.4214 4.9973 21 1 -1.0501 -0.0003 0.0000 22 1 3.0093 0.0819 -1.0246 23 1 3.0098 -0.9269 0.4420 24 1 4.4957 3.2816 -2.7469 25 1 2.4986 0.3368 2.6136 26 1 3.1001 2.0103 2.6902 27 1 5.3989 1.2052 2.2255 28 1 4.7974 -0.4682 2.1488 29 1 5.3533 -1.6574 4.3431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852008561.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:59 Heat of formation + Delta-G solvation = 160.621298 kcal Electronic energy + Delta-G solvation = -15864.163152 eV Core-core repulsion = 13065.853759 eV Total energy + Delta-G solvation = -2798.309393 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 298.012 amu Computer time = -0.10 seconds Orbital eigenvalues (eV) -43.19153 -38.53965 -35.57595 -34.20114 -33.38127 -32.92306 -31.86980 -29.95857 -28.10343 -26.00349 -23.34156 -22.95345 -21.93562 -19.93241 -18.39597 -18.18864 -17.26776 -17.12740 -16.29707 -15.78023 -15.48163 -15.32216 -14.92431 -14.60995 -14.38711 -13.87144 -13.35832 -13.17440 -12.62522 -12.50483 -12.39223 -12.00871 -11.83027 -11.76587 -11.25058 -11.17368 -11.00332 -10.93101 -10.68459 -10.52302 -9.08180 -8.24966 -5.71735 -0.17839 0.44463 1.33334 1.38030 1.44023 1.54735 1.61072 1.92905 2.03552 2.39696 3.04412 3.22617 3.49416 3.68830 3.75898 4.07072 4.16117 4.39940 4.50534 4.60333 4.63646 4.84376 5.02008 5.10059 5.21804 5.75497 5.84042 6.11431 6.75025 6.79524 6.86655 7.46988 7.85318 8.94102 Molecular weight = 298.01amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.003903 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.930685 B = 7173.079229 C = 7426.515827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.221 4.221 3 C 0.222 3.778 4 N -0.596 5.596 5 C -0.275 4.275 6 H 0.031 0.969 7 C -0.017 4.017 8 N -0.946 5.946 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.309 1.309 12 H -0.222 1.222 13 C 0.151 3.849 14 C 0.111 3.889 15 N -0.361 5.361 16 C 0.275 3.725 17 N -0.549 5.549 18 C 0.198 3.802 19 Br 0.088 6.912 20 N -0.312 5.312 21 H 0.243 0.757 22 H 0.066 0.934 23 H 0.109 0.891 24 H 0.266 0.734 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 -11.840 15.399 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.224 4.224 3 C 0.098 3.902 4 N -0.317 5.317 5 C -0.405 4.405 6 H 0.049 0.951 7 C -0.215 4.215 8 N -0.588 5.588 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.237 1.237 12 H -0.144 1.144 13 C 0.024 3.976 14 C -0.012 4.012 15 N -0.152 5.152 16 C -0.021 4.021 17 N -0.279 5.279 18 C -0.163 4.163 19 Br 0.167 6.833 20 N -0.144 5.144 21 H 0.259 0.741 22 H 0.084 0.916 23 H 0.127 0.873 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.157 0.843 29 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 1.742 -10.900 15.890 19.348 hybrid contribution 0.181 0.012 -1.238 1.252 sum 1.923 -10.888 14.652 18.356 Atomic orbital electron populations 1.25649 0.96774 1.00907 1.00815 1.25087 0.96713 1.00109 1.00454 1.18660 0.83152 0.91565 0.96815 1.43978 1.73259 1.12264 1.02224 1.18544 1.34222 0.84869 1.02830 0.95142 1.26247 0.98203 1.00430 0.96610 1.70029 1.44807 1.34266 1.09657 0.85900 0.77834 0.79922 0.79659 1.19828 1.23709 1.14407 1.21021 0.93563 0.99773 0.83214 1.22913 1.01436 1.05786 0.71114 1.50799 1.48608 1.07409 1.08414 1.27153 0.93516 0.95496 0.85928 1.70461 1.25700 1.12685 1.19015 1.25888 1.03979 0.92500 0.93899 1.96766 1.97126 1.73459 1.15912 1.78245 1.24500 1.13953 0.97727 0.74063 0.91608 0.87307 0.92495 0.91734 0.94259 0.90084 0.84251 0.70703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.34 19.25 74.32 1.43 -5.90 15 2 C -0.22 -8.35 13.66 31.13 0.43 -7.93 15 3 C 0.22 8.27 4.77 84.57 0.40 8.67 15 4 N -0.60 -25.21 2.05 -712.54 -1.46 -26.67 15 5 C -0.28 -14.79 9.92 84.03 0.83 -13.96 15 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 15 7 C -0.02 -0.95 5.27 84.86 0.45 -0.50 15 8 N -0.95 -57.06 13.97 21.65 0.30 -56.76 15 9 Si 0.94 39.87 25.03 68.60 1.72 41.59 15 10 H -0.27 -11.00 6.69 99.48 0.67 -10.33 15 11 H -0.31 -13.69 7.11 99.48 0.71 -12.99 15 12 H -0.22 -7.71 7.11 99.48 0.71 -7.01 15 13 C 0.15 5.33 5.89 86.38 0.51 5.84 15 14 C 0.11 3.09 6.87 86.38 0.59 3.69 15 15 N -0.36 -9.96 3.69 -352.07 -1.30 -11.26 15 16 C 0.28 5.85 12.63 180.36 2.28 8.12 15 17 N -0.55 -14.95 11.19 -198.88 -2.23 -17.18 15 18 C 0.20 5.97 8.69 180.73 1.57 7.54 15 19 Br 0.09 2.17 34.13 -20.37 -0.70 1.48 15 20 N -0.31 -10.43 12.57 -57.06 -0.72 -11.15 15 21 H 0.24 5.66 7.80 -4.41 -0.03 5.62 15 22 H 0.07 2.70 3.57 -2.38 -0.01 2.69 15 23 H 0.11 3.02 8.12 -2.39 -0.02 3.00 15 24 H 0.27 15.12 8.31 -92.70 -0.77 14.35 15 25 H 0.06 2.07 8.07 -2.39 -0.02 2.05 15 26 H 0.04 1.63 8.04 -2.39 -0.02 1.61 15 27 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 28 H 0.14 2.74 8.09 -2.39 -0.02 2.72 15 29 H 0.28 2.37 8.06 -2.91 -0.02 2.35 15 Total: -1.00 -71.07 286.73 5.23 -65.83 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.12 Total: 8.55 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 8.49 Total: 5.56 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -5.40 Total: -123.01 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.72 Total: 41.59 kcal Atomic # 35 Polarization: 2.17 SS G_CDS: -0.70 Total: 1.48 kcal Total: -71.07 5.23 -65.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852008561.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.453 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.10 seconds