Wall clock time and date at job start Fri Apr 10 2020 17:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47324 * 270.00642 * 3 2 1 5 5 H 1.48499 * 109.46757 * 30.00982 * 3 2 1 6 6 H 1.48504 * 109.47045 * 150.00482 * 3 2 1 7 7 C 1.37878 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.46861 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99689 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.50749 * 325.08091 * 11 10 9 13 13 C 1.53126 * 109.50323 * 85.19616 * 11 10 9 14 14 C 1.53118 * 109.16030 * 177.59237 * 13 11 10 15 15 C 1.53030 * 109.28277 * 302.34975 * 14 13 11 16 16 N 1.46850 * 109.52389 * 59.17715 * 15 14 13 17 17 C 1.46896 * 110.99743 * 174.16471 * 16 15 14 18 18 C 1.53007 * 109.47096 * 294.20723 * 17 16 15 19 19 N 1.46900 * 109.47281 * 180.02562 * 18 17 16 20 20 C 1.47014 * 111.00019 * 190.00296 * 19 18 17 21 21 C 1.53096 * 109.25675 * 182.39166 * 20 19 18 22 22 O 1.43015 * 109.25724 * 303.14825 * 21 20 19 23 23 C 1.43010 * 113.73980 * 58.67537 * 22 21 20 24 24 C 1.47017 * 110.99765 * 313.63672 * 19 18 17 25 25 C 1.46843 * 111.19569 * 298.25899 * 16 15 14 26 26 H 0.96995 * 120.00129 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46900 * 59.99804 * 9 7 2 28 28 H 1.08997 * 109.46759 * 299.99961 * 9 7 2 29 29 H 1.00897 * 111.00101 * 303.94699 * 10 9 7 30 30 H 1.09000 * 109.52479 * 297.50495 * 13 11 10 31 31 H 1.09005 * 109.51958 * 57.69055 * 13 11 10 32 32 H 1.09004 * 109.50035 * 62.29120 * 14 13 11 33 33 H 1.09005 * 109.50127 * 182.36236 * 14 13 11 34 34 H 1.09004 * 109.46235 * 299.16506 * 15 14 13 35 35 H 1.08996 * 109.46665 * 179.19528 * 15 14 13 36 36 H 1.09001 * 109.47092 * 174.21646 * 17 16 15 37 37 H 1.09000 * 109.47630 * 54.20874 * 17 16 15 38 38 H 1.09005 * 109.47084 * 60.00307 * 18 17 16 39 39 H 1.09000 * 109.47004 * 300.00534 * 18 17 16 40 40 H 1.09004 * 109.50706 * 62.45483 * 20 19 18 41 41 H 1.08995 * 109.54210 * 302.34427 * 20 19 18 42 42 H 1.08997 * 109.50375 * 183.21864 * 21 20 19 43 43 H 1.08994 * 109.50924 * 63.08237 * 21 20 19 44 44 H 1.08993 * 109.51045 * 61.26026 * 23 22 21 45 45 H 1.08999 * 109.51323 * 181.39624 * 23 22 21 46 46 H 1.09006 * 109.50736 * 297.54404 * 24 19 18 47 47 H 1.08995 * 109.50709 * 57.63009 * 24 19 18 48 48 H 1.09006 * 109.45957 * 181.75647 * 25 16 15 49 49 H 1.08994 * 109.46586 * 301.73401 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7003 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0012 12 1 0.5920 -4.8255 0.5880 13 6 1.1539 -5.2986 -1.4392 14 6 0.4785 -6.6727 -1.4350 15 6 1.4146 -7.6940 -0.7850 16 7 1.7202 -7.2747 0.5888 17 6 2.5043 -8.3002 1.2899 18 6 1.6534 -9.5593 1.4685 19 7 2.4372 -10.5846 2.1702 20 6 1.7449 -11.8813 2.1517 21 6 2.5657 -12.9032 2.9428 22 8 3.8810 -12.9837 2.3870 23 6 4.5843 -11.7386 2.3897 24 6 3.7840 -10.7048 1.5930 25 6 2.4118 -5.9795 0.6072 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8399 -3.5483 -0.7836 30 1 0.4735 -4.5594 -1.8620 31 1 2.0639 -5.3418 -2.0377 32 1 -0.4514 -6.6194 -0.8688 33 1 0.2636 -6.9757 -2.4599 34 1 2.3387 -7.7568 -1.3596 35 1 0.9308 -8.6705 -0.7676 36 1 2.8042 -7.9229 2.2676 37 1 3.3921 -8.5416 0.7055 38 1 1.3533 -9.9367 0.4909 39 1 0.7656 -9.3179 2.0529 40 1 1.6357 -12.2210 1.1217 41 1 0.7600 -11.7753 2.6063 42 1 2.0853 -13.8799 2.8839 43 1 2.6295 -12.5905 3.9850 44 1 4.7068 -11.3919 3.4158 45 1 5.5639 -11.8728 1.9308 46 1 3.7074 -11.0256 0.5540 47 1 4.2874 -9.7392 1.6395 48 1 2.6523 -5.7108 1.6359 49 1 3.3311 -6.0503 0.0260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905446508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:26 Heat of formation + Delta-G solvation = -36.108266 kcal Electronic energy + Delta-G solvation = -24558.629583 eV Core-core repulsion = 21134.266166 eV Total energy + Delta-G solvation = -3424.363417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05131 -39.01337 -36.57613 -35.05983 -33.00713 -32.05707 -31.54962 -29.95352 -28.86384 -26.47275 -25.84806 -24.43168 -23.60150 -22.46344 -21.73386 -21.01021 -20.21822 -19.61690 -17.13749 -16.55476 -16.40313 -15.75492 -15.65751 -15.43139 -15.14175 -14.97990 -14.59225 -14.39800 -14.15942 -13.89731 -13.70309 -13.30570 -13.05976 -12.72721 -12.51051 -12.36578 -12.09913 -12.05176 -11.76333 -11.61492 -11.27946 -11.24174 -10.96945 -10.92291 -10.81261 -10.69838 -10.53092 -10.27546 -10.23721 -10.02364 -9.77930 -9.16331 -8.70878 -8.48200 -8.25872 -7.26601 -6.02538 -4.04461 3.28186 3.31813 3.37970 3.42569 3.52622 4.01340 4.43963 4.49917 4.61235 4.63091 4.76741 4.79016 4.92788 4.98755 5.03067 5.10414 5.17240 5.20675 5.24980 5.30382 5.33293 5.36913 5.42036 5.48366 5.52503 5.57958 5.66222 5.73270 5.79975 5.80391 5.93313 6.00003 6.04281 6.20366 6.25946 6.56259 6.58707 6.62202 6.62959 6.77518 7.14449 7.16599 7.29582 7.45666 7.79509 8.14051 8.40174 8.62463 9.04885 9.60337 11.08444 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.002350 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.290347 B =11909.881600 C =12315.742812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.197 3.803 10 N -0.686 5.686 11 C 0.092 3.908 12 H 0.079 0.921 13 C -0.150 4.150 14 C -0.112 4.112 15 C 0.056 3.944 16 N -0.537 5.537 17 C 0.056 3.944 18 C 0.059 3.941 19 N -0.535 5.535 20 C 0.018 3.982 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.063 3.937 24 C 0.010 3.990 25 C 0.073 3.927 26 H 0.261 0.739 27 H -0.013 1.013 28 H 0.028 0.972 29 H 0.328 0.672 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -25.400 1.895 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.315 5.315 11 C -0.019 4.019 12 H 0.097 0.903 13 C -0.189 4.189 14 C -0.151 4.151 15 C -0.072 4.072 16 N -0.263 5.263 17 C -0.072 4.072 18 C -0.068 4.068 19 N -0.261 5.261 20 C -0.110 4.110 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.014 4.014 24 C -0.118 4.118 25 C -0.055 4.055 26 H 0.071 0.929 27 H 0.005 0.995 28 H 0.046 0.954 29 H 0.144 0.856 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.059 0.941 47 H 0.111 0.889 48 H 0.099 0.901 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.032 -25.202 3.267 25.731 hybrid contribution 0.518 0.890 -2.211 2.439 sum 4.550 -24.312 1.056 24.756 Atomic orbital electron populations 1.69960 1.06062 1.26765 1.50903 1.24991 0.94877 0.99350 0.95387 0.86493 0.79813 0.83075 0.77985 1.20774 1.21236 1.19785 1.21196 0.93491 0.90313 1.50307 0.92040 1.19552 0.90512 0.87111 0.95777 1.60618 1.21098 1.01071 1.48721 1.21480 0.96753 0.89966 0.93723 0.90253 1.22355 1.00520 0.96797 0.99232 1.21521 0.99054 0.94846 0.99636 1.22128 0.98186 0.98425 0.88500 1.61751 1.46177 1.02764 1.15562 1.22162 0.94024 0.91531 0.99532 1.22170 0.97068 0.90710 0.96881 1.62248 1.02658 1.06402 1.54807 1.22779 0.98627 0.89578 0.99998 1.22664 0.82882 0.98964 0.96821 1.87978 1.27934 1.31511 1.83233 1.22689 0.94953 0.83521 1.00210 1.22913 0.90952 1.00841 0.97075 1.22049 0.94633 0.87218 1.01576 0.92924 0.99509 0.95408 0.85562 0.91486 0.92689 0.91114 0.92081 0.95390 0.91276 0.89763 0.94938 0.94630 0.89378 0.94012 0.89429 0.88489 0.92132 0.92104 0.88489 0.94092 0.88935 0.90143 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.62 9.32 -34.44 -0.32 -14.94 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 5.16 5.24 -4.98 -0.03 5.13 16 10 N -0.69 -14.62 6.24 -107.91 -0.67 -15.29 16 11 C 0.09 1.63 2.63 -67.63 -0.18 1.46 16 12 H 0.08 1.56 7.80 -51.93 -0.41 1.16 16 13 C -0.15 -2.35 5.26 -26.60 -0.14 -2.49 16 14 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 15 C 0.06 0.66 5.29 -3.84 -0.02 0.64 16 16 N -0.54 -6.96 4.66 -234.68 -1.09 -8.06 16 17 C 0.06 0.61 4.23 -3.82 -0.02 0.59 16 18 C 0.06 0.58 5.21 -3.82 -0.02 0.56 16 19 N -0.54 -4.93 4.88 -234.30 -1.14 -6.07 16 20 C 0.02 0.15 5.62 -3.71 -0.02 0.13 16 21 C 0.06 0.48 7.01 37.21 0.26 0.74 16 22 O -0.39 -3.71 10.83 -35.23 -0.38 -4.09 16 23 C 0.06 0.50 7.01 37.21 0.26 0.77 16 24 C 0.01 0.09 4.94 -3.71 -0.02 0.07 16 25 C 0.07 1.11 5.07 -3.84 -0.02 1.09 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H -0.01 -0.36 7.50 -51.93 -0.39 -0.75 16 28 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 29 H 0.33 6.71 8.44 -39.29 -0.33 6.38 16 30 H 0.07 1.18 7.54 -51.93 -0.39 0.79 16 31 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 36 H 0.08 0.96 7.99 -51.93 -0.41 0.55 16 37 H 0.03 0.34 6.26 -51.93 -0.33 0.02 16 38 H 0.04 0.35 6.37 -51.93 -0.33 0.02 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.76 6.05 -51.93 -0.31 0.45 16 48 H 0.08 1.28 8.02 -51.93 -0.42 0.86 16 49 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -30.34 371.26 -11.60 -41.94 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -9.10 Total: 1.81 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.52 Total: -6.39 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -2.17 Total: -55.60 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.38 Total: -4.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.34 -11.60 -41.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905446508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.827 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds