Wall clock time and date at job start Fri Apr 10 2020 17:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47324 * 270.00642 * 3 2 1 5 5 H 1.48499 * 109.46757 * 30.00982 * 3 2 1 6 6 H 1.48504 * 109.47045 * 150.00482 * 3 2 1 7 7 C 1.37878 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.46861 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99689 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.50749 * 325.08091 * 11 10 9 13 13 C 1.53126 * 109.50323 * 85.19616 * 11 10 9 14 14 C 1.53118 * 109.16030 * 177.59237 * 13 11 10 15 15 C 1.53030 * 109.28277 * 302.34975 * 14 13 11 16 16 N 1.46850 * 109.52389 * 59.17715 * 15 14 13 17 17 C 1.46896 * 110.99743 * 174.16471 * 16 15 14 18 18 C 1.53007 * 109.47096 * 294.20723 * 17 16 15 19 19 N 1.46900 * 109.47281 * 180.02562 * 18 17 16 20 20 C 1.47014 * 111.00019 * 190.00296 * 19 18 17 21 21 C 1.53096 * 109.25675 * 182.39166 * 20 19 18 22 22 O 1.43015 * 109.25724 * 303.14825 * 21 20 19 23 23 C 1.43010 * 113.73980 * 58.67537 * 22 21 20 24 24 C 1.47017 * 110.99765 * 313.63672 * 19 18 17 25 25 C 1.46843 * 111.19569 * 298.25899 * 16 15 14 26 26 H 0.96995 * 120.00129 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46900 * 59.99804 * 9 7 2 28 28 H 1.08997 * 109.46759 * 299.99961 * 9 7 2 29 29 H 1.00897 * 111.00101 * 303.94699 * 10 9 7 30 30 H 1.09000 * 109.52479 * 297.50495 * 13 11 10 31 31 H 1.09005 * 109.51958 * 57.69055 * 13 11 10 32 32 H 1.09004 * 109.50035 * 62.29120 * 14 13 11 33 33 H 1.09005 * 109.50127 * 182.36236 * 14 13 11 34 34 H 1.09004 * 109.46235 * 299.16506 * 15 14 13 35 35 H 1.08996 * 109.46665 * 179.19528 * 15 14 13 36 36 H 1.09001 * 109.47092 * 174.21646 * 17 16 15 37 37 H 1.09000 * 109.47630 * 54.20874 * 17 16 15 38 38 H 1.09005 * 109.47084 * 60.00307 * 18 17 16 39 39 H 1.09000 * 109.47004 * 300.00534 * 18 17 16 40 40 H 1.09004 * 109.50706 * 62.45483 * 20 19 18 41 41 H 1.08995 * 109.54210 * 302.34427 * 20 19 18 42 42 H 1.08997 * 109.50375 * 183.21864 * 21 20 19 43 43 H 1.08994 * 109.50924 * 63.08237 * 21 20 19 44 44 H 1.08993 * 109.51045 * 61.26026 * 23 22 21 45 45 H 1.08999 * 109.51323 * 181.39624 * 23 22 21 46 46 H 1.09006 * 109.50736 * 297.54404 * 24 19 18 47 47 H 1.08995 * 109.50709 * 57.63009 * 24 19 18 48 48 H 1.09006 * 109.45957 * 181.75647 * 25 16 15 49 49 H 1.08994 * 109.46586 * 301.73401 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7003 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0012 12 1 0.5920 -4.8255 0.5880 13 6 1.1539 -5.2986 -1.4392 14 6 0.4785 -6.6727 -1.4350 15 6 1.4146 -7.6940 -0.7850 16 7 1.7202 -7.2747 0.5888 17 6 2.5043 -8.3002 1.2899 18 6 1.6534 -9.5593 1.4685 19 7 2.4372 -10.5846 2.1702 20 6 1.7449 -11.8813 2.1517 21 6 2.5657 -12.9032 2.9428 22 8 3.8810 -12.9837 2.3870 23 6 4.5843 -11.7386 2.3897 24 6 3.7840 -10.7048 1.5930 25 6 2.4118 -5.9795 0.6072 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8399 -3.5483 -0.7836 30 1 0.4735 -4.5594 -1.8620 31 1 2.0639 -5.3418 -2.0377 32 1 -0.4514 -6.6194 -0.8688 33 1 0.2636 -6.9757 -2.4599 34 1 2.3387 -7.7568 -1.3596 35 1 0.9308 -8.6705 -0.7676 36 1 2.8042 -7.9229 2.2676 37 1 3.3921 -8.5416 0.7055 38 1 1.3533 -9.9367 0.4909 39 1 0.7656 -9.3179 2.0529 40 1 1.6357 -12.2210 1.1217 41 1 0.7600 -11.7753 2.6063 42 1 2.0853 -13.8799 2.8839 43 1 2.6295 -12.5905 3.9850 44 1 4.7068 -11.3919 3.4158 45 1 5.5639 -11.8728 1.9308 46 1 3.7074 -11.0256 0.5540 47 1 4.2874 -9.7392 1.6395 48 1 2.6523 -5.7108 1.6359 49 1 3.3311 -6.0503 0.0260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905446508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:26 Heat of formation + Delta-G solvation = -59.527280 kcal Electronic energy + Delta-G solvation = -24559.645107 eV Core-core repulsion = 21134.266166 eV Total energy + Delta-G solvation = -3425.378942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81518 -40.09043 -37.58877 -36.40542 -34.76747 -33.51748 -32.18210 -31.16276 -30.10834 -27.76133 -27.27315 -25.07420 -24.75864 -23.90198 -23.23983 -22.04343 -21.13194 -20.80918 -18.56432 -17.88785 -17.13947 -16.87716 -16.70016 -16.45598 -16.05680 -15.94530 -15.84761 -15.73369 -15.38173 -15.13476 -14.84337 -14.53317 -14.23789 -14.00276 -13.85132 -13.55227 -13.34881 -13.24348 -12.99137 -12.74694 -12.60393 -12.38600 -12.32472 -12.14519 -12.07940 -12.02366 -11.75248 -11.55528 -11.49757 -11.45768 -11.15269 -10.66670 -10.66253 -9.41496 -9.29545 -9.05871 -8.22638 -6.34095 1.40669 1.42654 1.54425 2.38583 2.49222 2.92381 3.09259 3.10451 3.62611 3.81287 3.85824 3.88586 3.96128 3.98336 4.04581 4.08203 4.19598 4.31937 4.33124 4.35682 4.45567 4.49311 4.58941 4.61190 4.62724 4.70547 4.73167 4.80976 4.81809 4.89812 4.92832 4.97094 4.99167 5.03591 5.06358 5.07797 5.22788 5.34005 5.36663 5.61722 5.88545 5.92550 6.00905 6.08852 6.15830 6.17861 6.45538 6.72489 6.89562 7.36860 8.88853 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.002350 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.290347 B =11909.881600 C =12315.742812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.215 3.785 10 N -0.685 5.685 11 C 0.092 3.908 12 H 0.052 0.948 13 C -0.143 4.143 14 C -0.107 4.107 15 C 0.059 3.941 16 N -0.546 5.546 17 C 0.061 3.939 18 C 0.068 3.932 19 N -0.544 5.544 20 C 0.019 3.981 21 C 0.062 3.938 22 O -0.407 6.407 23 C 0.062 3.938 24 C 0.012 3.988 25 C 0.087 3.913 26 H 0.265 0.735 27 H -0.037 1.037 28 H -0.005 1.005 29 H 0.335 0.665 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.111 0.889 46 H 0.036 0.964 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 -26.498 1.523 27.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.087 3.913 10 N -0.314 5.314 11 C -0.019 4.019 12 H 0.071 0.929 13 C -0.183 4.183 14 C -0.145 4.145 15 C -0.069 4.069 16 N -0.272 5.272 17 C -0.066 4.066 18 C -0.059 4.059 19 N -0.270 5.270 20 C -0.109 4.109 21 C -0.015 4.015 22 O -0.326 6.326 23 C -0.015 4.015 24 C -0.116 4.116 25 C -0.041 4.041 26 H 0.074 0.926 27 H -0.020 1.020 28 H 0.013 0.987 29 H 0.152 0.848 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.055 0.945 47 H 0.113 0.887 48 H 0.088 0.912 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.303 -26.337 2.894 27.021 hybrid contribution 0.090 1.162 -2.073 2.378 sum 5.392 -25.175 0.821 25.759 Atomic orbital electron populations 1.70095 1.07829 1.27997 1.51502 1.25977 0.95805 1.03454 0.94604 0.85315 0.78482 0.77897 0.78485 1.19628 1.20739 1.18857 1.21558 0.93816 0.91446 1.50590 0.91721 1.19141 0.90483 0.88656 0.92986 1.60492 1.20409 1.01367 1.49148 1.21499 0.96117 0.89177 0.95130 0.92928 1.22238 1.00649 0.97992 0.97381 1.21496 0.98608 0.93266 1.01122 1.22149 0.98301 0.98750 0.87658 1.61700 1.46440 1.02382 1.16649 1.22130 0.94278 0.91248 0.98983 1.22023 0.96586 0.90337 0.96981 1.62257 1.03020 1.06904 1.54816 1.22826 0.99085 0.88996 1.00009 1.22797 0.82228 0.99838 0.96616 1.87954 1.28821 1.32309 1.83470 1.22781 0.95413 0.82952 1.00321 1.22914 0.90711 1.01124 0.96852 1.21761 0.94137 0.87556 1.00656 0.92625 1.01978 0.98715 0.84805 0.94086 0.91656 0.91977 0.89818 0.94679 0.89245 0.90455 0.94036 0.94274 0.90087 0.94321 0.88471 0.86708 0.92064 0.92068 0.87054 0.94540 0.88717 0.91187 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -30.98 9.32 25.60 0.24 -30.74 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.22 11.76 5.24 85.56 0.45 12.21 16 10 N -0.68 -29.93 6.24 -495.31 -3.09 -33.02 16 11 C 0.09 3.32 2.63 44.97 0.12 3.44 16 12 H 0.05 2.18 7.80 -2.39 -0.02 2.16 16 13 C -0.14 -4.51 5.26 30.68 0.16 -4.35 16 14 C -0.11 -2.62 6.09 30.64 0.19 -2.43 16 15 C 0.06 1.27 5.29 86.32 0.46 1.73 16 16 N -0.55 -13.47 4.66 -896.38 -4.17 -17.64 16 17 C 0.06 1.24 4.23 86.31 0.36 1.60 16 18 C 0.07 1.22 5.21 86.31 0.45 1.67 16 19 N -0.54 -9.12 4.88 -895.17 -4.37 -13.49 16 20 C 0.02 0.27 5.62 86.31 0.49 0.75 16 21 C 0.06 0.82 7.01 72.01 0.50 1.33 16 22 O -0.41 -7.15 10.83 -148.98 -1.61 -8.76 16 23 C 0.06 0.89 7.01 72.02 0.50 1.40 16 24 C 0.01 0.19 4.94 86.32 0.43 0.61 16 25 C 0.09 2.59 5.07 86.33 0.44 3.03 16 26 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 27 H -0.04 -2.19 7.50 -2.39 -0.02 -2.21 16 28 H -0.01 -0.32 8.06 -2.39 -0.02 -0.34 16 29 H 0.33 13.82 8.44 -89.70 -0.76 13.06 16 30 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 31 H 0.06 1.92 8.10 -2.38 -0.02 1.90 16 32 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.62 6.21 -2.39 -0.01 1.61 16 36 H 0.08 1.68 7.99 -2.39 -0.02 1.66 16 37 H 0.04 0.78 6.26 -2.39 -0.01 0.77 16 38 H 0.04 0.67 6.37 -2.38 -0.02 0.66 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.09 1.39 6.05 -2.39 -0.01 1.37 16 48 H 0.07 2.22 8.02 -2.38 -0.02 2.20 16 49 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -65.90 371.26 -5.54 -71.44 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.15 Total: 20.99 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 5.25 Total: -9.31 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -11.35 Total: -121.03 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -1.61 Total: -8.76 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.90 -5.54 -71.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905446508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.909 kcal (2) G-P(sol) polarization free energy of solvation -65.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds