Wall clock time and date at job start Fri Apr 10 2020 17:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99926 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.50023 * 35.07984 * 11 10 9 13 13 C 1.53122 * 109.50710 * 275.00266 * 11 10 9 14 14 C 1.53117 * 109.16293 * 182.40515 * 13 11 10 15 15 C 1.53037 * 109.27861 * 57.64950 * 14 13 11 16 16 N 1.46840 * 109.52479 * 300.82007 * 15 14 13 17 17 C 1.46897 * 111.00245 * 185.83814 * 16 15 14 18 18 C 1.53003 * 109.47464 * 293.95692 * 17 16 15 19 19 N 1.46895 * 109.47369 * 179.97438 * 18 17 16 20 20 C 1.47008 * 111.00335 * 293.63963 * 19 18 17 21 21 C 1.53095 * 109.25885 * 177.60808 * 20 19 18 22 22 O 1.43016 * 109.26142 * 56.84541 * 21 20 19 23 23 C 1.43009 * 113.73709 * 301.33103 * 22 21 20 24 24 C 1.47018 * 111.00004 * 169.99832 * 19 18 17 25 25 C 1.46848 * 111.20076 * 61.74448 * 16 15 14 26 26 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 28 28 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 29 29 H 1.00899 * 110.99766 * 303.95201 * 10 9 7 30 30 H 1.09004 * 109.51899 * 302.30709 * 13 11 10 31 31 H 1.08994 * 109.52242 * 62.49319 * 13 11 10 32 32 H 1.09000 * 109.50410 * 177.59244 * 14 13 11 33 33 H 1.08998 * 109.50005 * 297.70886 * 14 13 11 34 34 H 1.08999 * 109.45984 * 60.84015 * 15 14 13 35 35 H 1.08998 * 109.46151 * 180.80576 * 15 14 13 36 36 H 1.09005 * 109.47012 * 53.95784 * 17 16 15 37 37 H 1.08999 * 109.47584 * 173.95120 * 17 16 15 38 38 H 1.08995 * 109.47032 * 299.99949 * 18 17 16 39 39 H 1.09000 * 109.46931 * 59.99666 * 18 17 16 40 40 H 1.09001 * 109.50646 * 297.53804 * 20 19 18 41 41 H 1.08997 * 109.51014 * 57.66544 * 20 19 18 42 42 H 1.08997 * 109.50566 * 296.90700 * 21 20 19 43 43 H 1.09009 * 109.54195 * 176.79973 * 21 20 19 44 44 H 1.08998 * 109.50715 * 298.73498 * 23 22 21 45 45 H 1.08997 * 109.54335 * 178.62486 * 23 22 21 46 46 H 1.08999 * 109.50622 * 302.32998 * 24 19 18 47 47 H 1.08996 * 109.50034 * 62.46043 * 24 19 18 48 48 H 1.08996 * 109.46815 * 178.23975 * 25 16 15 49 49 H 1.09002 * 109.45967 * 58.26990 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 1 5.8559 -1.7874 0.5915 13 6 5.9842 -2.5059 -1.4369 14 6 7.5119 -2.6079 -1.4335 15 6 7.9285 -3.9309 -0.7868 16 7 7.4132 -3.9894 0.5869 17 6 7.9095 -5.1828 1.2851 18 6 7.3315 -6.4367 0.6258 19 7 7.8282 -7.6301 1.3235 20 6 9.2786 -7.7828 1.1389 21 6 9.7627 -9.0013 1.9294 22 8 9.0379 -10.1583 1.5036 23 6 7.6221 -10.0441 1.6698 24 6 7.1162 -8.8363 0.8767 25 6 5.9456 -3.9408 0.6061 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6803 -0.8889 28 1 3.8746 -0.6799 0.8911 29 1 3.6255 -3.0954 0.7821 30 1 5.5665 -3.3141 -2.0373 31 1 5.6841 -1.5461 -1.8572 32 1 7.8814 -2.5716 -2.4584 33 1 7.9308 -1.7774 -0.8654 34 1 7.5208 -4.7612 -1.3634 35 1 9.0162 -4.0002 -0.7699 36 1 8.9976 -5.2110 1.2279 37 1 7.6015 -5.1469 2.3300 38 1 6.2434 -6.4085 0.6830 39 1 7.6395 -6.4726 -0.4192 40 1 9.4979 -7.9250 0.0807 41 1 9.7877 -6.8891 1.4998 42 1 9.5923 -8.8362 2.9932 43 1 10.8273 -9.1526 1.7505 44 1 7.3894 -9.9093 2.7261 45 1 7.1377 -10.9491 1.3030 46 1 6.0468 -8.7114 1.0462 47 1 7.3009 -8.9951 -0.1857 48 1 5.5930 -4.0174 1.6346 49 1 5.5472 -4.7711 0.0230 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905446509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:28 Heat of formation + Delta-G solvation = -33.075632 kcal Electronic energy + Delta-G solvation = -24856.255075 eV Core-core repulsion = 21432.023163 eV Total energy + Delta-G solvation = -3424.231912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12278 -39.16504 -36.52223 -35.14333 -33.07634 -32.20394 -31.58140 -29.76406 -29.20476 -26.44657 -26.29507 -24.42285 -23.96479 -22.42480 -21.73734 -20.83686 -20.53533 -19.22030 -17.14091 -16.77302 -16.52050 -15.86014 -15.68951 -15.44096 -15.21071 -14.95127 -14.69381 -14.62197 -14.36006 -13.97312 -13.59099 -13.36122 -13.03304 -12.70950 -12.64130 -12.50556 -12.32401 -12.22863 -11.98689 -11.78542 -11.69252 -11.23847 -10.98633 -10.91587 -10.84068 -10.64609 -10.43373 -10.36756 -10.07405 -10.01909 -9.76650 -9.26125 -8.82231 -8.58742 -8.29416 -7.48765 -6.05917 -4.03739 3.29057 3.30024 3.36267 3.39350 3.51593 3.89365 4.42272 4.45049 4.54544 4.60825 4.75443 4.77108 4.82835 4.91703 4.95939 5.06355 5.12493 5.17709 5.18666 5.22549 5.27203 5.29389 5.40014 5.42122 5.45525 5.45677 5.56857 5.63887 5.70325 5.81516 5.83505 5.95321 5.99602 6.17672 6.20292 6.48928 6.54546 6.55738 6.63389 6.75566 6.80559 7.01283 7.03476 7.07853 7.62200 7.90772 8.33316 8.65092 9.01964 9.56216 11.07370 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.002719 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.667386 B =10295.859718 C =10975.373959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.286 1.286 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.167 3.833 10 N -0.677 5.677 11 C 0.087 3.913 12 H 0.043 0.957 13 C -0.108 4.108 14 C -0.117 4.117 15 C 0.055 3.945 16 N -0.531 5.531 17 C 0.061 3.939 18 C 0.017 3.983 19 N -0.532 5.532 20 C 0.014 3.986 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.016 3.984 25 C 0.055 3.945 26 H 0.264 0.736 27 H 0.022 0.978 28 H -0.015 1.015 29 H 0.335 0.665 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.041 0.959 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.073 0.927 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.242 -16.511 2.144 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.039 3.961 10 N -0.308 5.308 11 C -0.023 4.023 12 H 0.061 0.939 13 C -0.147 4.147 14 C -0.155 4.155 15 C -0.073 4.073 16 N -0.255 5.255 17 C -0.067 4.067 18 C -0.113 4.113 19 N -0.258 5.258 20 C -0.114 4.114 21 C -0.013 4.013 22 O -0.306 6.306 23 C -0.013 4.013 24 C -0.112 4.112 25 C -0.073 4.073 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.002 0.998 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.060 0.940 48 H 0.091 0.909 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.192 -16.123 2.137 26.713 hybrid contribution 0.166 0.701 -0.403 0.825 sum 21.357 -15.422 1.735 26.400 Atomic orbital electron populations 1.69901 1.06162 1.26874 1.51049 1.24908 0.94748 0.98960 0.94741 0.86830 0.80317 0.83842 0.78594 1.20166 1.19180 1.21210 1.21066 0.88991 0.94766 1.50554 0.90345 1.20016 0.96464 0.84911 0.94728 1.60511 1.03948 1.16969 1.49362 1.21473 0.89939 0.95486 0.95451 0.93864 1.21575 0.93419 1.02551 0.97114 1.21602 0.96909 0.97208 0.99828 1.22114 0.99174 0.97526 0.88482 1.62179 1.09593 1.37385 1.16299 1.22200 0.99612 0.85910 0.99000 1.22928 1.01311 0.90858 0.96158 1.62204 1.03589 1.02658 1.57313 1.22855 0.89252 0.99861 0.99443 1.22670 0.96144 0.84356 0.98172 1.87981 1.18369 1.38606 1.85659 1.22668 0.81252 0.97521 0.99847 1.22806 0.99662 0.90654 0.98079 1.22271 0.86433 0.97842 1.00736 0.92660 0.96028 0.99785 0.84748 0.91807 0.91727 0.91685 0.91353 0.94897 0.91298 0.90931 0.89746 0.89986 0.94559 0.94065 0.89254 0.92136 0.88493 0.92107 0.88405 0.89387 0.94008 0.90895 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.52 -14.82 9.87 -34.44 -0.34 -15.16 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 9 C 0.17 4.07 4.31 -4.98 -0.02 4.05 16 10 N -0.68 -13.91 6.30 -107.90 -0.68 -14.59 16 11 C 0.09 1.47 2.66 -67.63 -0.18 1.29 16 12 H 0.04 0.80 7.80 -51.93 -0.41 0.39 16 13 C -0.11 -1.68 5.49 -26.61 -0.15 -1.83 16 14 C -0.12 -1.44 6.09 -26.65 -0.16 -1.60 16 15 C 0.05 0.61 5.05 -3.84 -0.02 0.59 16 16 N -0.53 -6.41 4.86 -234.67 -1.14 -7.55 16 17 C 0.06 0.61 5.29 -3.82 -0.02 0.59 16 18 C 0.02 0.16 4.26 -3.82 -0.02 0.15 16 19 N -0.53 -4.88 4.73 -234.32 -1.11 -5.99 16 20 C 0.01 0.11 5.44 -3.72 -0.02 0.09 16 21 C 0.06 0.48 7.01 37.21 0.26 0.74 16 22 O -0.39 -3.71 10.83 -35.23 -0.38 -4.09 16 23 C 0.06 0.51 7.01 37.21 0.26 0.77 16 24 C 0.02 0.14 5.65 -3.71 -0.02 0.12 16 25 C 0.06 0.76 4.10 -3.83 -0.02 0.75 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.02 0.54 6.91 -51.93 -0.36 0.18 16 28 H -0.02 -0.38 7.11 -51.93 -0.37 -0.75 16 29 H 0.33 6.65 8.35 -39.29 -0.33 6.32 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.10 7.52 -51.93 -0.39 0.71 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.37 6.75 -51.93 -0.35 0.02 16 35 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.89 6.40 -51.93 -0.33 0.55 16 39 H 0.04 0.37 6.66 -51.93 -0.35 0.03 16 40 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.63 6.38 -51.93 -0.33 0.29 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 49 H 0.04 0.60 6.61 -51.93 -0.34 0.26 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -31.23 365.57 -11.20 -42.43 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.97 Total: 1.79 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -0.54 Total: -7.55 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -2.15 Total: -55.18 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.38 Total: -4.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.23 -11.20 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905446509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.350 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds