Wall clock time and date at job start Fri Apr 10 2020 17:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46724 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99926 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.50023 * 35.07984 * 11 10 9 13 13 C 1.53122 * 109.50710 * 275.00266 * 11 10 9 14 14 C 1.53117 * 109.16293 * 182.40515 * 13 11 10 15 15 C 1.53037 * 109.27861 * 57.64950 * 14 13 11 16 16 N 1.46840 * 109.52479 * 300.82007 * 15 14 13 17 17 C 1.46897 * 111.00245 * 185.83814 * 16 15 14 18 18 C 1.53003 * 109.47464 * 293.95692 * 17 16 15 19 19 N 1.46895 * 109.47369 * 179.97438 * 18 17 16 20 20 C 1.47008 * 111.00335 * 293.63963 * 19 18 17 21 21 C 1.53095 * 109.25885 * 177.60808 * 20 19 18 22 22 O 1.43016 * 109.26142 * 56.84541 * 21 20 19 23 23 C 1.43009 * 113.73709 * 301.33103 * 22 21 20 24 24 C 1.47018 * 111.00004 * 169.99832 * 19 18 17 25 25 C 1.46848 * 111.20076 * 61.74448 * 16 15 14 26 26 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 28 28 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 29 29 H 1.00899 * 110.99766 * 303.95201 * 10 9 7 30 30 H 1.09004 * 109.51899 * 302.30709 * 13 11 10 31 31 H 1.08994 * 109.52242 * 62.49319 * 13 11 10 32 32 H 1.09000 * 109.50410 * 177.59244 * 14 13 11 33 33 H 1.08998 * 109.50005 * 297.70886 * 14 13 11 34 34 H 1.08999 * 109.45984 * 60.84015 * 15 14 13 35 35 H 1.08998 * 109.46151 * 180.80576 * 15 14 13 36 36 H 1.09005 * 109.47012 * 53.95784 * 17 16 15 37 37 H 1.08999 * 109.47584 * 173.95120 * 17 16 15 38 38 H 1.08995 * 109.47032 * 299.99949 * 18 17 16 39 39 H 1.09000 * 109.46931 * 59.99666 * 18 17 16 40 40 H 1.09001 * 109.50646 * 297.53804 * 20 19 18 41 41 H 1.08997 * 109.51014 * 57.66544 * 20 19 18 42 42 H 1.08997 * 109.50566 * 296.90700 * 21 20 19 43 43 H 1.09009 * 109.54195 * 176.79973 * 21 20 19 44 44 H 1.08998 * 109.50715 * 298.73498 * 23 22 21 45 45 H 1.08997 * 109.54335 * 178.62486 * 23 22 21 46 46 H 1.08999 * 109.50622 * 302.32998 * 24 19 18 47 47 H 1.08996 * 109.50034 * 62.46043 * 24 19 18 48 48 H 1.08996 * 109.46815 * 178.23975 * 25 16 15 49 49 H 1.09002 * 109.45967 * 58.26990 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 1 5.8559 -1.7874 0.5915 13 6 5.9842 -2.5059 -1.4369 14 6 7.5119 -2.6079 -1.4335 15 6 7.9285 -3.9309 -0.7868 16 7 7.4132 -3.9894 0.5869 17 6 7.9095 -5.1828 1.2851 18 6 7.3315 -6.4367 0.6258 19 7 7.8282 -7.6301 1.3235 20 6 9.2786 -7.7828 1.1389 21 6 9.7627 -9.0013 1.9294 22 8 9.0379 -10.1583 1.5036 23 6 7.6221 -10.0441 1.6698 24 6 7.1162 -8.8363 0.8767 25 6 5.9456 -3.9408 0.6061 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6803 -0.8889 28 1 3.8746 -0.6799 0.8911 29 1 3.6255 -3.0954 0.7821 30 1 5.5665 -3.3141 -2.0373 31 1 5.6841 -1.5461 -1.8572 32 1 7.8814 -2.5716 -2.4584 33 1 7.9308 -1.7774 -0.8654 34 1 7.5208 -4.7612 -1.3634 35 1 9.0162 -4.0002 -0.7699 36 1 8.9976 -5.2110 1.2279 37 1 7.6015 -5.1469 2.3300 38 1 6.2434 -6.4085 0.6830 39 1 7.6395 -6.4726 -0.4192 40 1 9.4979 -7.9250 0.0807 41 1 9.7877 -6.8891 1.4998 42 1 9.5923 -8.8362 2.9932 43 1 10.8273 -9.1526 1.7505 44 1 7.3894 -9.9093 2.7261 45 1 7.1377 -10.9491 1.3030 46 1 6.0468 -8.7114 1.0462 47 1 7.3009 -8.9951 -0.1857 48 1 5.5930 -4.0174 1.6346 49 1 5.5472 -4.7711 0.0230 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905446509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:28 Heat of formation + Delta-G solvation = -58.127768 kcal Electronic energy + Delta-G solvation = -24857.341417 eV Core-core repulsion = 21432.023163 eV Total energy + Delta-G solvation = -3425.318254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90758 -40.10688 -37.55996 -36.39099 -34.74024 -33.73726 -32.19611 -31.22741 -30.11206 -28.09482 -27.25709 -25.05990 -24.92356 -23.70739 -23.18793 -21.98707 -21.44625 -20.32142 -18.99812 -17.74382 -17.21119 -16.91138 -16.74452 -16.33903 -16.18972 -16.06114 -15.86722 -15.61944 -15.56907 -15.37748 -14.70048 -14.54752 -14.40805 -14.02888 -13.80697 -13.74555 -13.48020 -13.27981 -13.12511 -12.78380 -12.56958 -12.44944 -12.32352 -12.24390 -11.95539 -11.78212 -11.69241 -11.64510 -11.42776 -11.31113 -11.24236 -10.82199 -10.72417 -9.56118 -9.21136 -9.18549 -8.31953 -6.36312 1.33418 1.34645 1.46027 2.32271 2.56817 2.89631 2.97396 3.02115 3.55646 3.73832 3.79755 3.90129 3.95925 3.98731 4.08849 4.10553 4.17824 4.25114 4.31857 4.34585 4.39980 4.45776 4.57104 4.59479 4.66215 4.69787 4.75686 4.77158 4.79346 4.80591 4.88640 4.93264 4.98568 4.99257 5.08173 5.08801 5.12810 5.24944 5.40908 5.54379 5.79993 5.87660 5.92932 6.07737 6.15140 6.15875 6.53866 6.64642 6.75261 7.28750 8.84716 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.002719 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.667386 B =10295.859718 C =10975.373959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.253 1.253 6 H -0.279 1.279 7 C -0.528 4.528 8 H 0.038 0.962 9 C 0.180 3.820 10 N -0.684 5.684 11 C 0.087 3.913 12 H 0.032 0.968 13 C -0.107 4.107 14 C -0.110 4.110 15 C 0.056 3.944 16 N -0.536 5.536 17 C 0.068 3.932 18 C 0.026 3.974 19 N -0.539 5.539 20 C 0.015 3.985 21 C 0.061 3.939 22 O -0.407 6.407 23 C 0.064 3.936 24 C 0.016 3.984 25 C 0.068 3.932 26 H 0.268 0.732 27 H 0.022 0.978 28 H -0.016 1.016 29 H 0.336 0.664 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.062 0.938 45 H 0.112 0.888 46 H 0.089 0.911 47 H 0.034 0.966 48 H 0.072 0.928 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.111 -16.350 2.246 29.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.177 1.177 6 H -0.204 1.204 7 C -0.566 4.566 8 H 0.056 0.944 9 C 0.052 3.948 10 N -0.315 5.315 11 C -0.023 4.023 12 H 0.050 0.950 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.071 4.071 16 N -0.260 5.260 17 C -0.060 4.060 18 C -0.104 4.104 19 N -0.264 5.264 20 C -0.113 4.113 21 C -0.016 4.016 22 O -0.326 6.326 23 C -0.012 4.012 24 C -0.112 4.112 25 C -0.061 4.061 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.001 0.999 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.120 0.880 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.108 0.892 47 H 0.052 0.948 48 H 0.090 0.910 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 24.085 -15.989 2.242 28.996 hybrid contribution -0.762 0.544 -0.432 1.031 sum 23.323 -15.446 1.809 28.032 Atomic orbital electron populations 1.70049 1.08102 1.28243 1.52281 1.25867 0.95645 1.03248 0.94146 0.85682 0.79275 0.78508 0.79276 1.19022 1.17665 1.20434 1.21333 0.91333 0.93455 1.50459 0.94358 1.19721 0.93582 0.87096 0.94428 1.60428 1.06676 1.14758 1.49632 1.21552 0.87322 0.96845 0.96607 0.94999 1.21561 0.96041 1.01244 0.95724 1.21566 0.94039 0.97887 1.01310 1.22156 1.00488 0.96722 0.87747 1.62167 1.08012 1.38694 1.17145 1.22177 1.00445 0.85026 0.98372 1.22772 1.00419 0.91214 0.95951 1.62222 1.04448 1.02565 1.57200 1.22902 0.88456 1.00667 0.99235 1.22816 0.96954 0.83622 0.98167 1.87956 1.19094 1.39630 1.85886 1.22746 0.80794 0.97812 0.99882 1.22823 0.99816 0.90827 0.97749 1.22038 0.87994 0.95796 1.00258 0.92306 0.96034 0.99875 0.84623 0.92437 0.93561 0.89645 0.91505 0.94859 0.88931 0.89180 0.90178 0.91380 0.94918 0.94659 0.87991 0.91908 0.86710 0.91935 0.87020 0.89250 0.94760 0.91003 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 2 C 0.01 0.51 5.47 84.65 0.46 0.97 16 3 Si 0.95 44.78 27.47 68.60 1.88 46.67 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.53 -31.12 9.87 25.60 0.25 -30.87 16 8 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 9 C 0.18 8.84 4.31 85.56 0.37 9.21 16 10 N -0.68 -28.40 6.30 -495.30 -3.12 -31.52 16 11 C 0.09 2.88 2.66 44.97 0.12 3.00 16 12 H 0.03 1.15 7.80 -2.39 -0.02 1.13 16 13 C -0.11 -3.23 5.49 30.67 0.17 -3.06 16 14 C -0.11 -2.44 6.09 30.65 0.19 -2.25 16 15 C 0.06 1.10 5.05 86.33 0.44 1.54 16 16 N -0.54 -11.79 4.86 -896.37 -4.35 -16.15 16 17 C 0.07 1.20 5.29 86.30 0.46 1.66 16 18 C 0.03 0.47 4.26 86.31 0.37 0.83 16 19 N -0.54 -9.06 4.73 -895.25 -4.23 -13.29 16 20 C 0.02 0.21 5.44 86.31 0.47 0.68 16 21 C 0.06 0.80 7.01 72.01 0.50 1.31 16 22 O -0.41 -7.19 10.83 -148.98 -1.61 -8.81 16 23 C 0.06 0.94 7.01 72.01 0.50 1.44 16 24 C 0.02 0.26 5.65 86.31 0.49 0.75 16 25 C 0.07 1.80 4.10 86.33 0.35 2.16 16 26 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.02 1.06 6.91 -2.39 -0.02 1.05 16 28 H -0.02 -0.80 7.11 -2.39 -0.02 -0.82 16 29 H 0.34 13.63 8.35 -89.70 -0.75 12.88 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.54 7.52 -2.39 -0.02 1.52 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.03 0.67 6.75 -2.39 -0.02 0.65 16 35 H 0.09 1.44 8.06 -2.39 -0.02 1.42 16 36 H 0.09 1.32 6.43 -2.38 -0.02 1.30 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.42 6.40 -2.39 -0.02 1.40 16 39 H 0.03 0.62 6.66 -2.39 -0.02 0.60 16 40 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 1.13 6.38 -2.39 -0.02 1.12 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 47 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 49 H 0.04 1.12 6.61 -2.39 -0.02 1.11 16 Total: -1.00 -67.87 365.57 -5.89 -73.76 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.11 Total: 21.43 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 5.14 Total: -12.63 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -11.41 Total: -120.41 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -1.61 Total: -8.81 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -67.87 -5.89 -73.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905446509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.628 kcal (2) G-P(sol) polarization free energy of solvation -67.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds