Wall clock time and date at job start Fri Apr 10 2020 17:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99858 * 2 1 4 4 C 1.46897 * 110.99881 * 123.95431 * 2 1 3 5 5 C 1.52998 * 115.55470 * 296.32128 * 4 2 1 6 6 N 1.46503 * 109.47107 * 274.64917 * 5 4 2 7 7 C 1.34779 * 120.00378 * 176.15693 * 6 5 4 8 8 O 1.21582 * 119.99390 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00110 * 180.02562 * 7 6 5 10 10 C 1.47427 * 125.64933 * 0.03242 * 9 7 6 11 11 C 1.55119 * 104.94325 * 203.97219 * 10 9 7 12 12 C 1.55159 * 101.48822 * 323.22619 * 11 10 9 13 13 O 1.42898 * 110.71568 * 276.83209 * 12 11 10 14 14 C 1.50695 * 110.72183 * 153.73310 * 12 11 10 15 15 H 1.08003 * 120.00133 * 2.43943 * 14 12 11 16 16 C 1.37882 * 119.99949 * 182.16453 * 14 12 11 17 17 N 1.31514 * 119.99770 * 0.27147 * 16 14 12 18 18 Si 1.86793 * 120.00067 * 180.27713 * 16 14 12 19 19 H 1.48500 * 109.47295 * 89.99772 * 18 16 14 20 20 H 1.48503 * 109.47009 * 209.99879 * 18 16 14 21 21 H 1.48498 * 109.47169 * 329.99939 * 18 16 14 22 22 C 1.47022 * 125.64733 * 180.02562 * 9 7 6 23 23 C 1.53007 * 117.52063 * 82.02280 * 4 2 1 24 24 C 1.52999 * 59.99990 * 107.48004 * 23 4 2 25 25 H 1.08998 * 109.47358 * 301.68974 * 1 2 3 26 26 H 1.08996 * 109.47109 * 61.69565 * 1 2 3 27 27 H 1.09004 * 109.46836 * 181.69250 * 1 2 3 28 28 H 1.09000 * 109.47115 * 183.94975 * 3 2 1 29 29 H 1.08993 * 109.47450 * 303.95409 * 3 2 1 30 30 H 1.09009 * 109.46877 * 63.95494 * 3 2 1 31 31 H 1.08994 * 109.47778 * 154.64512 * 5 4 2 32 32 H 1.09006 * 109.46864 * 34.64085 * 5 4 2 33 33 H 0.97005 * 119.99563 * 356.14486 * 6 5 4 34 34 H 1.09002 * 110.36532 * 322.93635 * 10 9 7 35 35 H 1.08999 * 110.36574 * 85.25847 * 10 9 7 36 36 H 1.09001 * 111.16535 * 205.12865 * 11 10 9 37 37 H 1.09007 * 110.93613 * 81.21700 * 11 10 9 38 38 H 0.96700 * 114.00127 * 177.56033 * 13 12 11 39 39 H 0.97001 * 120.00256 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.88538 * 59.55206 * 22 9 7 41 41 H 1.08998 * 109.88069 * 298.38376 * 22 9 7 42 42 H 1.09001 * 117.49971 * 214.97547 * 23 4 2 43 43 H 1.08999 * 117.49211 * 359.97438 * 23 4 2 44 44 H 1.09005 * 117.49589 * 252.51198 * 24 23 4 45 45 H 1.08994 * 117.49896 * 107.49498 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6605 -0.2064 2.5216 6 7 2.6495 0.8098 2.8898 7 6 2.5117 1.4988 4.0400 8 8 1.5664 1.2771 4.7718 9 7 3.4212 2.4339 4.3785 10 6 4.6089 2.8035 3.5871 11 6 5.6035 3.4040 4.6150 12 6 4.6422 4.1605 5.5695 13 8 4.3201 5.4500 5.0447 14 6 5.2439 4.2822 6.9457 15 1 6.2364 3.9016 7.1368 16 6 4.5294 4.8843 7.9597 17 7 3.3209 5.3478 7.7271 18 14 5.2782 5.0420 9.6637 19 1 6.0205 6.3245 9.7615 20 1 4.1987 5.0159 10.6831 21 1 6.2109 3.9111 9.9012 22 6 3.3932 3.2546 5.5980 23 6 2.0730 -2.2870 0.9905 24 6 3.3530 -1.4494 0.9615 25 1 -0.3634 0.5398 0.8744 26 1 -0.3633 0.4873 -0.9048 27 1 -0.3633 -1.0273 0.0304 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8723 0.9234 31 1 1.6788 -1.0133 3.2540 32 1 0.6678 0.2434 2.5012 33 1 3.4036 0.9867 2.3059 34 1 5.0385 1.9210 3.1130 35 1 4.3474 3.5492 2.8363 36 1 6.2986 4.0923 4.1342 37 1 6.1395 2.6161 5.1443 38 1 3.6926 5.9492 5.5852 39 1 2.8180 5.7711 8.4404 40 1 3.4211 2.6121 6.4781 41 1 2.4916 3.8670 5.6120 42 1 1.8853 -2.8888 1.8797 43 1 1.7329 -2.7195 0.0495 44 1 3.8553 -1.3309 0.0013 45 1 4.0075 -1.5002 1.8316 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922987817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:35 Heat of formation + Delta-G solvation = -38.113107 kcal Electronic energy + Delta-G solvation = -25363.247700 eV Core-core repulsion = 21802.964253 eV Total energy + Delta-G solvation = -3560.283448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05481 -38.95012 -37.27203 -34.58129 -34.27750 -33.67196 -32.19326 -30.07218 -27.98292 -27.76660 -26.86112 -24.79549 -24.07679 -22.72949 -22.35747 -19.76512 -19.67817 -19.15185 -17.58801 -17.07698 -16.52224 -15.90124 -15.44070 -15.08643 -14.95314 -14.73505 -14.33658 -14.27283 -13.78066 -13.48483 -13.03422 -12.93761 -12.83237 -12.59246 -12.38093 -12.08176 -11.88194 -11.78486 -11.65699 -11.63270 -11.43133 -11.05379 -10.83457 -10.67453 -10.66366 -10.48596 -10.29549 -10.17565 -9.60219 -9.33653 -8.90354 -8.67536 -8.56135 -8.31945 -7.76892 -6.28696 -4.37257 2.97311 3.21509 3.28935 3.31528 3.56906 3.61124 3.72098 4.26429 4.40307 4.46618 4.75577 4.79407 4.92411 4.99102 5.22913 5.35971 5.37768 5.38829 5.43905 5.46850 5.60792 5.65988 5.68602 5.71731 5.77770 5.80962 5.86260 5.96050 6.00347 6.09082 6.49607 6.66772 6.71206 6.78723 6.85296 6.87758 6.98187 7.25050 7.31714 7.62234 7.73470 8.02542 8.51164 8.66375 9.10728 9.30617 9.40090 10.79185 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028432 B = 0.003484 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.565239 B = 8034.985510 C = 8121.303528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.507 5.507 3 C 0.019 3.981 4 C 0.009 3.991 5 C 0.154 3.846 6 N -0.748 5.748 7 C 0.714 3.286 8 O -0.598 6.598 9 N -0.629 5.629 10 C 0.104 3.896 11 C -0.116 4.116 12 C 0.248 3.752 13 O -0.586 6.586 14 C -0.538 4.538 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.122 3.878 23 C -0.146 4.146 24 C -0.155 4.155 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.384 0.616 39 H 0.270 0.730 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -10.737 -14.852 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.229 5.229 3 C -0.129 4.129 4 C -0.082 4.082 5 C 0.028 3.972 6 N -0.406 5.406 7 C 0.416 3.584 8 O -0.477 6.477 9 N -0.366 5.366 10 C -0.020 4.020 11 C -0.154 4.154 12 C 0.208 3.792 13 O -0.395 6.395 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.534 5.534 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.000 4.000 23 C -0.185 4.185 24 C -0.192 4.192 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.496 -11.252 -15.130 18.915 hybrid contribution -0.102 0.818 1.828 2.005 sum -1.598 -10.434 -13.303 16.982 Atomic orbital electron populations 1.22388 0.87071 1.02182 1.00981 1.62061 1.08057 1.14119 1.38702 1.22437 1.00726 0.88413 1.01281 1.21858 1.02515 0.94354 0.89463 1.20977 0.92297 0.90897 0.93040 1.45203 1.29876 1.42132 1.23383 1.15537 0.82401 0.79108 0.81370 1.90884 1.33149 1.70567 1.53119 1.47946 1.24838 1.38695 1.25155 1.22254 0.86617 0.98063 0.95021 1.22760 0.96956 0.99179 0.96465 1.19492 0.88206 0.80628 0.90908 1.86083 1.68226 1.30729 1.54469 1.21515 1.02590 1.39654 0.93871 0.91530 1.25075 0.94538 0.94102 0.99548 1.69642 1.10576 1.38943 1.34191 0.86394 0.78880 0.78648 0.82940 1.20383 1.20994 1.19709 1.22875 1.01273 0.92480 0.83343 1.23061 1.01045 0.90754 1.03594 1.23061 0.90190 1.02372 1.03622 0.94981 0.91257 0.91261 0.91403 0.91359 0.94262 0.91447 0.91422 0.77226 0.92738 0.92093 0.90536 0.90555 0.76478 0.91951 0.91839 0.92023 0.88328 0.87932 0.87959 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.32 60.07 0.56 0.76 16 2 N -0.51 -5.16 5.09 -235.40 -1.20 -6.36 16 3 C 0.02 0.20 8.69 60.06 0.52 0.72 16 4 C 0.01 0.09 1.06 -131.60 -0.14 -0.05 16 5 C 0.15 2.04 5.03 -4.04 -0.02 2.02 16 6 N -0.75 -11.25 4.25 -65.23 -0.28 -11.53 16 7 C 0.71 14.55 8.49 -86.92 -0.74 13.82 16 8 O -0.60 -14.64 16.67 5.29 0.09 -14.56 16 9 N -0.63 -13.07 3.33 -176.10 -0.59 -13.65 16 10 C 0.10 1.80 6.57 -2.41 -0.02 1.78 16 11 C -0.12 -2.27 6.24 -24.47 -0.15 -2.42 16 12 C 0.25 5.98 0.85 -89.94 -0.08 5.91 16 13 O -0.59 -14.71 13.08 -35.23 -0.46 -15.17 16 14 C -0.54 -14.05 8.11 -34.44 -0.28 -14.33 16 15 H 0.07 1.71 7.77 -52.48 -0.41 1.30 16 16 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 17 N -0.89 -23.93 10.96 55.43 0.61 -23.32 16 18 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.12 3.00 5.39 -3.06 -0.02 2.98 16 23 C -0.15 -1.23 10.10 -26.73 -0.27 -1.50 16 24 C -0.15 -1.37 9.84 -26.73 -0.26 -1.63 16 25 H 0.03 0.34 6.76 -51.93 -0.35 -0.01 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.49 6.69 -51.92 -0.35 0.14 16 31 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 32 H 0.07 1.00 6.50 -51.93 -0.34 0.66 16 33 H 0.39 5.11 6.21 -40.82 -0.25 4.86 16 34 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 38 H 0.38 9.96 7.21 45.56 0.33 10.29 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.06 1.70 7.81 -51.93 -0.41 1.30 16 41 H 0.06 1.66 8.01 -51.93 -0.42 1.25 16 42 H 0.10 0.77 8.05 -51.93 -0.42 0.36 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -30.04 359.04 -9.17 -39.22 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.75 Total: 14.67 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.98 Total: 9.82 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -1.45 Total: -54.86 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.37 Total: -29.72 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.04 -9.17 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922987817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.105 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds