Wall clock time and date at job start Fri Apr 10 2020 17:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99858 * 2 1 4 4 C 1.46897 * 110.99881 * 123.95431 * 2 1 3 5 5 C 1.52998 * 115.55470 * 296.32128 * 4 2 1 6 6 N 1.46503 * 109.47107 * 274.64917 * 5 4 2 7 7 C 1.34779 * 120.00378 * 176.15693 * 6 5 4 8 8 O 1.21582 * 119.99390 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00110 * 180.02562 * 7 6 5 10 10 C 1.47427 * 125.64933 * 0.03242 * 9 7 6 11 11 C 1.55119 * 104.94325 * 203.97219 * 10 9 7 12 12 C 1.55159 * 101.48822 * 323.22619 * 11 10 9 13 13 O 1.42898 * 110.71568 * 276.83209 * 12 11 10 14 14 C 1.50695 * 110.72183 * 153.73310 * 12 11 10 15 15 H 1.08003 * 120.00133 * 2.43943 * 14 12 11 16 16 C 1.37882 * 119.99949 * 182.16453 * 14 12 11 17 17 N 1.31514 * 119.99770 * 0.27147 * 16 14 12 18 18 Si 1.86793 * 120.00067 * 180.27713 * 16 14 12 19 19 H 1.48500 * 109.47295 * 89.99772 * 18 16 14 20 20 H 1.48503 * 109.47009 * 209.99879 * 18 16 14 21 21 H 1.48498 * 109.47169 * 329.99939 * 18 16 14 22 22 C 1.47022 * 125.64733 * 180.02562 * 9 7 6 23 23 C 1.53007 * 117.52063 * 82.02280 * 4 2 1 24 24 C 1.52999 * 59.99990 * 107.48004 * 23 4 2 25 25 H 1.08998 * 109.47358 * 301.68974 * 1 2 3 26 26 H 1.08996 * 109.47109 * 61.69565 * 1 2 3 27 27 H 1.09004 * 109.46836 * 181.69250 * 1 2 3 28 28 H 1.09000 * 109.47115 * 183.94975 * 3 2 1 29 29 H 1.08993 * 109.47450 * 303.95409 * 3 2 1 30 30 H 1.09009 * 109.46877 * 63.95494 * 3 2 1 31 31 H 1.08994 * 109.47778 * 154.64512 * 5 4 2 32 32 H 1.09006 * 109.46864 * 34.64085 * 5 4 2 33 33 H 0.97005 * 119.99563 * 356.14486 * 6 5 4 34 34 H 1.09002 * 110.36532 * 322.93635 * 10 9 7 35 35 H 1.08999 * 110.36574 * 85.25847 * 10 9 7 36 36 H 1.09001 * 111.16535 * 205.12865 * 11 10 9 37 37 H 1.09007 * 110.93613 * 81.21700 * 11 10 9 38 38 H 0.96700 * 114.00127 * 177.56033 * 13 12 11 39 39 H 0.97001 * 120.00256 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.88538 * 59.55206 * 22 9 7 41 41 H 1.08998 * 109.88069 * 298.38376 * 22 9 7 42 42 H 1.09001 * 117.49971 * 214.97547 * 23 4 2 43 43 H 1.08999 * 117.49211 * 359.97438 * 23 4 2 44 44 H 1.09005 * 117.49589 * 252.51198 * 24 23 4 45 45 H 1.08994 * 117.49896 * 107.49498 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6605 -0.2064 2.5216 6 7 2.6495 0.8098 2.8898 7 6 2.5117 1.4988 4.0400 8 8 1.5664 1.2771 4.7718 9 7 3.4212 2.4339 4.3785 10 6 4.6089 2.8035 3.5871 11 6 5.6035 3.4040 4.6150 12 6 4.6422 4.1605 5.5695 13 8 4.3201 5.4500 5.0447 14 6 5.2439 4.2822 6.9457 15 1 6.2364 3.9016 7.1368 16 6 4.5294 4.8843 7.9597 17 7 3.3209 5.3478 7.7271 18 14 5.2782 5.0420 9.6637 19 1 6.0205 6.3245 9.7615 20 1 4.1987 5.0159 10.6831 21 1 6.2109 3.9111 9.9012 22 6 3.3932 3.2546 5.5980 23 6 2.0730 -2.2870 0.9905 24 6 3.3530 -1.4494 0.9615 25 1 -0.3634 0.5398 0.8744 26 1 -0.3633 0.4873 -0.9048 27 1 -0.3633 -1.0273 0.0304 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8723 0.9234 31 1 1.6788 -1.0133 3.2540 32 1 0.6678 0.2434 2.5012 33 1 3.4036 0.9867 2.3059 34 1 5.0385 1.9210 3.1130 35 1 4.3474 3.5492 2.8363 36 1 6.2986 4.0923 4.1342 37 1 6.1395 2.6161 5.1443 38 1 3.6926 5.9492 5.5852 39 1 2.8180 5.7711 8.4404 40 1 3.4211 2.6121 6.4781 41 1 2.4916 3.8670 5.6120 42 1 1.8853 -2.8888 1.8797 43 1 1.7329 -2.7195 0.0495 44 1 3.8553 -1.3309 0.0013 45 1 4.0075 -1.5002 1.8316 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922987817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:34 Heat of formation + Delta-G solvation = -61.086819 kcal Electronic energy + Delta-G solvation = -25364.243915 eV Core-core repulsion = 21802.964253 eV Total energy + Delta-G solvation = -3561.279663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46092 -40.10581 -38.96250 -36.10894 -35.44987 -34.96064 -34.20861 -31.75385 -29.69203 -28.59873 -28.22826 -26.50968 -24.98699 -24.15845 -23.20171 -21.47821 -21.09986 -20.34551 -19.21392 -18.80971 -17.64927 -17.26051 -16.96043 -16.65689 -16.39426 -16.03081 -15.60545 -15.31082 -15.04155 -14.82914 -14.78243 -14.64615 -14.04787 -13.84922 -13.54794 -13.50111 -13.32254 -13.19957 -12.85882 -12.60559 -12.56216 -12.55542 -12.33180 -12.29783 -12.28787 -12.11206 -11.49407 -11.41258 -11.20340 -10.91295 -10.65482 -10.32934 -10.29485 -9.50513 -9.37343 -8.27628 -6.43612 1.40467 1.42811 1.52408 1.57774 2.08131 2.37030 2.71607 2.81402 2.99173 3.11788 3.54685 3.78145 3.85989 4.05339 4.07122 4.15093 4.19684 4.35042 4.40848 4.53403 4.54563 4.58461 4.65729 4.68388 4.69733 4.81292 4.84961 5.00197 5.00932 5.02337 5.06819 5.11065 5.21546 5.31152 5.34269 5.40299 5.47715 5.73941 5.95466 5.99591 6.05585 6.12819 6.63302 7.00382 7.27403 7.34871 7.50349 8.78612 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028432 B = 0.003484 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.565239 B = 8034.985510 C = 8121.303528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.502 5.502 3 C 0.020 3.980 4 C -0.003 4.003 5 C 0.156 3.844 6 N -0.722 5.722 7 C 0.709 3.291 8 O -0.647 6.647 9 N -0.634 5.634 10 C 0.108 3.892 11 C -0.109 4.109 12 C 0.233 3.767 13 O -0.588 6.588 14 C -0.558 4.558 15 H 0.069 0.931 16 C 0.025 3.975 17 N -0.918 5.918 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.141 3.859 23 C -0.133 4.133 24 C -0.144 4.144 25 H 0.012 0.988 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.013 0.987 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.407 0.593 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.376 0.624 39 H 0.270 0.730 40 H 0.029 0.971 41 H 0.024 0.976 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -12.167 -16.749 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.224 5.224 3 C -0.128 4.128 4 C -0.094 4.094 5 C 0.030 3.970 6 N -0.379 5.379 7 C 0.411 3.589 8 O -0.530 6.530 9 N -0.371 5.371 10 C -0.013 4.013 11 C -0.147 4.147 12 C 0.193 3.807 13 O -0.396 6.396 14 C -0.596 4.596 15 H 0.087 0.913 16 C -0.176 4.176 17 N -0.557 5.557 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.017 3.983 23 C -0.171 4.171 24 C -0.182 4.182 25 H 0.031 0.969 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.244 0.756 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.226 0.774 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.122 0.878 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.274 -12.705 -17.101 21.305 hybrid contribution -0.688 1.238 2.381 2.771 sum -0.414 -11.467 -14.719 18.663 Atomic orbital electron populations 1.22437 0.86840 1.02739 1.00664 1.62151 1.08312 1.13897 1.38070 1.22455 1.01498 0.88446 1.00388 1.21757 1.04534 0.95608 0.87533 1.21065 0.90950 0.89895 0.95099 1.45009 1.30365 1.41145 1.21406 1.15772 0.81668 0.79204 0.82269 1.90845 1.35114 1.71967 1.55024 1.47876 1.26207 1.38453 1.24529 1.22424 0.84621 1.00194 0.94108 1.22758 0.96781 0.99121 0.96064 1.19710 0.88881 0.80298 0.91815 1.86074 1.67940 1.31239 1.54335 1.21867 1.02807 1.39746 0.95170 0.91296 1.25835 0.94881 0.93901 1.02978 1.69755 1.11543 1.39406 1.35007 0.85455 0.78041 0.78842 0.78718 1.19679 1.21226 1.19101 1.22365 1.00068 0.91888 0.83949 1.23161 1.00288 0.89179 1.04459 1.23131 0.89667 1.01134 1.04233 0.96925 0.90064 0.90206 0.90277 0.90353 0.96849 0.91935 0.93421 0.75568 0.88169 0.91194 0.88944 0.89762 0.77396 0.92064 0.95252 0.95758 0.87774 0.86723 0.86815 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.32 127.69 1.19 1.56 16 2 N -0.50 -9.15 5.09 -898.68 -4.58 -13.72 16 3 C 0.02 0.38 8.69 127.69 1.11 1.49 16 4 C 0.00 -0.06 1.06 3.53 0.00 -0.05 16 5 C 0.16 4.03 5.03 86.38 0.43 4.47 16 6 N -0.72 -20.95 4.25 -478.54 -2.03 -22.99 16 7 C 0.71 29.14 8.49 179.06 1.52 30.66 16 8 O -0.65 -32.88 16.67 -3.97 -0.07 -32.95 16 9 N -0.63 -26.33 3.33 -829.34 -2.76 -29.09 16 10 C 0.11 3.49 6.57 86.93 0.57 4.06 16 11 C -0.11 -4.09 6.24 32.06 0.20 -3.89 16 12 C 0.23 11.34 0.85 -10.35 -0.01 11.33 16 13 O -0.59 -29.89 13.08 -148.98 -1.95 -31.84 16 14 C -0.56 -29.34 8.11 25.60 0.21 -29.13 16 15 H 0.07 3.50 7.77 -2.91 -0.02 3.48 16 16 C 0.02 1.31 5.28 84.66 0.45 1.75 16 17 N -0.92 -50.62 10.96 21.45 0.24 -50.38 16 18 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.14 7.18 5.39 86.73 0.47 7.65 16 23 C -0.13 -1.84 10.10 30.60 0.31 -1.53 16 24 C -0.14 -2.05 9.84 30.59 0.30 -1.75 16 25 H 0.01 0.26 6.76 -2.39 -0.02 0.25 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.20 8.13 -2.38 -0.02 1.19 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.01 0.31 6.69 -2.38 -0.02 0.30 16 31 H 0.06 1.69 7.90 -2.39 -0.02 1.67 16 32 H 0.05 1.44 6.50 -2.38 -0.02 1.43 16 33 H 0.41 9.54 6.21 -92.70 -0.58 8.96 16 34 H 0.10 2.35 7.30 -2.39 -0.02 2.33 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.08 3.01 8.03 -2.38 -0.02 2.99 16 38 H 0.38 20.19 7.21 -74.06 -0.53 19.66 16 39 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.03 1.65 7.81 -2.39 -0.02 1.63 16 41 H 0.02 1.38 8.01 -2.39 -0.02 1.36 16 42 H 0.10 1.35 8.05 -2.39 -0.02 1.34 16 43 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -67.61 359.04 -2.49 -70.09 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -0.12 Total: 39.95 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 6.75 Total: 26.62 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -9.13 Total: -116.18 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -2.01 Total: -64.79 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -67.61 -2.49 -70.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922987817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.008 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds