Wall clock time and date at job start Fri Apr 10 2020 17:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00085 * 2 1 4 4 C 1.46897 * 110.99888 * 123.95259 * 2 1 3 5 5 C 1.52997 * 115.55048 * 65.73157 * 4 2 1 6 6 N 1.46497 * 109.47288 * 78.81531 * 5 4 2 7 7 C 1.34780 * 120.00206 * 174.92926 * 6 5 4 8 8 O 1.21579 * 120.00051 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99765 * 179.97438 * 7 6 5 10 10 C 1.47425 * 125.65127 * 359.69885 * 9 7 6 11 11 C 1.55128 * 104.72145 * 155.81288 * 10 9 7 12 12 C 1.55156 * 101.48710 * 37.29591 * 11 10 9 13 13 O 1.42901 * 110.71754 * 82.69137 * 12 11 10 14 14 C 1.50701 * 110.87481 * 205.89576 * 12 11 10 15 15 H 1.07999 * 119.99475 * 355.06776 * 14 12 11 16 16 C 1.37874 * 119.99979 * 175.06283 * 14 12 11 17 17 N 1.31514 * 120.00095 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99689 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47253 * 120.00032 * 18 16 14 21 21 H 1.48501 * 109.46931 * 240.00131 * 18 16 14 22 22 C 1.47027 * 125.64448 * 180.02562 * 9 7 6 23 23 C 1.53000 * 117.49966 * 280.06133 * 4 2 1 24 24 C 1.53002 * 117.50083 * 211.40240 * 4 2 1 25 25 H 1.09004 * 109.46895 * 288.27153 * 1 2 3 26 26 H 1.08998 * 109.47226 * 48.26989 * 1 2 3 27 27 H 1.08994 * 109.47364 * 168.26903 * 1 2 3 28 28 H 1.09002 * 109.46967 * 183.95558 * 3 2 1 29 29 H 1.09004 * 109.46830 * 303.95201 * 3 2 1 30 30 H 1.08997 * 109.47240 * 63.95147 * 3 2 1 31 31 H 1.09003 * 109.47446 * 198.81542 * 5 4 2 32 32 H 1.09000 * 109.47526 * 318.81664 * 5 4 2 33 33 H 0.96999 * 120.00286 * 354.93805 * 6 5 4 34 34 H 1.08996 * 110.36206 * 274.74523 * 10 9 7 35 35 H 1.08999 * 110.36428 * 37.06851 * 10 9 7 36 36 H 1.08996 * 111.19032 * 279.18987 * 11 10 9 37 37 H 1.09002 * 110.93365 * 155.29085 * 11 10 9 38 38 H 0.96705 * 113.99720 * 185.02508 * 13 12 11 39 39 H 0.96997 * 119.99539 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.87976 * 300.43898 * 22 9 7 41 41 H 1.09000 * 109.88109 * 61.45420 * 22 9 7 42 42 H 1.09005 * 117.49961 * 0.02562 * 23 4 2 43 43 H 1.08999 * 117.49857 * 145.01984 * 23 4 2 44 44 H 1.09000 * 117.50264 * 214.97819 * 24 4 2 45 45 H 1.09005 * 117.49470 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.7022 -2.2674 1.1144 6 7 2.6309 -2.9322 0.1970 7 6 2.6277 -4.2759 0.0913 8 8 1.8538 -4.9362 0.7570 9 7 3.4817 -4.8874 -0.7532 10 6 4.4634 -4.2117 -1.6211 11 6 5.5588 -5.2787 -1.8823 12 6 4.7094 -6.5721 -1.9962 13 8 4.1696 -6.7081 -3.3123 14 6 5.5255 -7.7845 -1.6288 15 1 6.5789 -7.6815 -1.4140 16 6 4.9273 -9.0252 -1.5667 17 7 3.6444 -9.1505 -1.8276 18 14 5.9388 -10.5280 -1.1105 19 1 7.3460 -10.1218 -0.8656 20 1 5.3804 -11.1459 0.1189 21 1 5.8942 -11.5109 -2.2227 22 6 3.5839 -6.3385 -0.9665 23 6 2.0272 -0.0733 2.5015 24 6 3.3300 -0.3159 1.7353 25 1 -0.3633 0.3222 0.9759 26 1 -0.3633 0.6840 -0.7669 27 1 -0.3634 -1.0061 -0.2089 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.8260 -2.6773 2.1168 32 1 0.6786 -2.4326 0.7782 33 1 3.2482 -2.4055 -0.3344 34 1 3.9958 -3.9075 -2.5575 35 1 4.8897 -3.3481 -1.1108 36 1 6.2554 -5.3410 -1.0464 37 1 6.0868 -5.0747 -2.8139 38 1 3.5687 -7.4588 -3.4153 39 1 3.2237 -10.0234 -1.7842 40 1 3.8316 -6.8345 -0.0280 41 1 2.6399 -6.7240 -1.3515 42 1 1.6571 0.9506 2.5548 43 1 1.8396 -0.6874 3.3823 44 1 3.9990 -1.0895 2.1124 45 1 3.8176 0.5483 1.2841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922987822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:37 Heat of formation + Delta-G solvation = -33.476094 kcal Electronic energy + Delta-G solvation = -25097.450754 eV Core-core repulsion = 21537.368382 eV Total energy + Delta-G solvation = -3560.082372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.05802 -39.17705 -37.26961 -34.44276 -34.18431 -33.40117 -32.17995 -30.03880 -28.47611 -27.69743 -26.52639 -24.84367 -24.07604 -22.81191 -22.37008 -19.62240 -19.54242 -19.10168 -17.58400 -17.02319 -16.83463 -15.84141 -15.34391 -15.09064 -14.91781 -14.78818 -14.32229 -14.08121 -13.72321 -13.53980 -13.06952 -12.88837 -12.77529 -12.63200 -12.58247 -12.15789 -11.98480 -11.67552 -11.56300 -11.38055 -11.34316 -11.05608 -11.01651 -10.76584 -10.60991 -10.43336 -10.41189 -10.12089 -9.53527 -9.26616 -8.73227 -8.64195 -8.48211 -8.25808 -7.66805 -6.23804 -4.32231 3.02346 3.23548 3.32097 3.35496 3.44217 3.71439 3.84630 4.30074 4.34460 4.46468 4.52203 4.74023 4.88619 4.99972 5.04217 5.23963 5.28745 5.35327 5.44767 5.45824 5.50848 5.63251 5.64940 5.71680 5.77327 5.81200 5.82955 5.88516 6.09377 6.17088 6.57072 6.70965 6.75451 6.78406 6.87442 6.95301 7.07061 7.33232 7.38822 7.74784 7.77877 8.09253 8.62265 8.72547 9.22085 9.34458 9.42997 10.84020 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.003304 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.358174 B = 8471.321953 C = 8605.454447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.505 5.505 3 C 0.016 3.984 4 C 0.032 3.968 5 C 0.190 3.810 6 N -0.742 5.742 7 C 0.715 3.285 8 O -0.601 6.601 9 N -0.630 5.630 10 C 0.105 3.895 11 C -0.116 4.116 12 C 0.247 3.753 13 O -0.585 6.585 14 C -0.536 4.536 15 H 0.066 0.934 16 C 0.070 3.930 17 N -0.893 5.893 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.124 3.876 23 C -0.202 4.202 24 C -0.167 4.167 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.382 0.618 39 H 0.269 0.731 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 19.609 4.500 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.227 5.227 3 C -0.132 4.132 4 C -0.059 4.059 5 C 0.065 3.935 6 N -0.400 5.400 7 C 0.417 3.583 8 O -0.481 6.481 9 N -0.367 5.367 10 C -0.019 4.019 11 C -0.154 4.154 12 C 0.207 3.793 13 O -0.394 6.394 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.532 5.532 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.002 3.998 23 C -0.242 4.242 24 C -0.204 4.204 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.715 19.300 4.464 19.994 hybrid contribution 0.056 -0.597 0.874 1.060 sum -2.660 18.703 5.338 19.631 Atomic orbital electron populations 1.22410 0.86657 1.03093 1.00299 1.61850 1.08212 1.13245 1.39377 1.22567 1.01273 0.88722 1.00664 1.22069 1.01358 0.93763 0.88733 1.20394 0.93452 0.85830 0.93819 1.44967 1.42443 1.05075 1.47473 1.15510 0.81023 0.81301 0.80468 1.90875 1.43313 1.64462 1.49412 1.47942 1.37398 1.09625 1.41771 1.22256 0.90357 0.95562 0.93676 1.22755 0.96381 0.94773 1.01470 1.19518 0.88168 0.91630 0.79999 1.86105 1.66943 1.54287 1.32030 1.21531 0.96213 0.91708 1.48023 0.91541 1.25074 0.95032 0.99405 0.93798 1.69713 1.09855 1.24984 1.48613 0.86361 0.80295 0.82165 0.78147 1.19623 1.20798 1.20786 1.22830 1.00876 0.75331 1.00763 1.23511 1.02230 1.02152 0.96346 1.23300 0.90731 1.03741 1.02663 0.95201 0.91292 0.90782 0.90806 0.91070 0.95252 0.91105 0.91581 0.76865 0.92002 0.92684 0.90551 0.90684 0.76800 0.92094 0.91887 0.91970 0.88596 0.88118 0.87796 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.37 60.07 0.56 0.77 16 2 N -0.50 -4.97 5.16 -235.40 -1.22 -6.19 16 3 C 0.02 0.12 8.59 60.07 0.52 0.63 16 4 C 0.03 0.33 1.76 -131.60 -0.23 0.09 16 5 C 0.19 2.56 5.67 -4.05 -0.02 2.54 16 6 N -0.74 -11.65 5.49 -65.23 -0.36 -12.00 16 7 C 0.72 14.91 8.49 -86.91 -0.74 14.17 16 8 O -0.60 -14.87 16.67 5.30 0.09 -14.78 16 9 N -0.63 -13.40 3.32 -176.09 -0.59 -13.99 16 10 C 0.10 1.88 6.58 -2.41 -0.02 1.86 16 11 C -0.12 -2.32 6.24 -24.46 -0.15 -2.47 16 12 C 0.25 6.04 0.85 -89.94 -0.08 5.97 16 13 O -0.58 -14.83 13.07 -35.23 -0.46 -15.29 16 14 C -0.54 -14.15 8.13 -34.44 -0.28 -14.43 16 15 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 16 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 17 N -0.89 -24.11 10.96 55.43 0.61 -23.50 16 18 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.12 3.09 5.23 -3.06 -0.02 3.07 16 23 C -0.20 -1.72 9.47 -26.69 -0.25 -1.97 16 24 C -0.17 -1.48 9.45 -26.69 -0.25 -1.73 16 25 H 0.03 0.25 8.01 -51.93 -0.42 -0.17 16 26 H 0.07 0.53 7.98 -51.93 -0.41 0.11 16 27 H 0.07 0.75 7.00 -51.93 -0.36 0.38 16 28 H 0.07 0.53 6.29 -51.93 -0.33 0.21 16 29 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 30 H 0.03 0.20 6.39 -51.93 -0.33 -0.13 16 31 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 32 H 0.07 0.95 6.73 -51.93 -0.35 0.60 16 33 H 0.40 5.55 6.95 -40.82 -0.28 5.27 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.80 7.29 -51.93 -0.38 0.42 16 36 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.38 9.93 7.45 45.56 0.34 10.27 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.06 1.71 7.82 -51.93 -0.41 1.31 16 41 H 0.06 1.70 7.92 -51.93 -0.41 1.28 16 42 H 0.10 0.73 6.60 -51.93 -0.34 0.39 16 43 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.10 0.78 5.98 -51.93 -0.31 0.47 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -30.51 355.71 -9.11 -39.63 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -6.48 Total: 14.89 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.05 Total: 10.25 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -1.55 Total: -55.68 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.37 Total: -30.08 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.51 -9.11 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922987822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.152 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds