Wall clock time and date at job start Fri Apr 10 2020 17:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00085 * 2 1 4 4 C 1.46897 * 110.99888 * 123.95259 * 2 1 3 5 5 C 1.52997 * 115.55048 * 65.73157 * 4 2 1 6 6 N 1.46497 * 109.47288 * 78.81531 * 5 4 2 7 7 C 1.34780 * 120.00206 * 174.92926 * 6 5 4 8 8 O 1.21579 * 120.00051 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99765 * 179.97438 * 7 6 5 10 10 C 1.47425 * 125.65127 * 359.69885 * 9 7 6 11 11 C 1.55128 * 104.72145 * 155.81288 * 10 9 7 12 12 C 1.55156 * 101.48710 * 37.29591 * 11 10 9 13 13 O 1.42901 * 110.71754 * 82.69137 * 12 11 10 14 14 C 1.50701 * 110.87481 * 205.89576 * 12 11 10 15 15 H 1.07999 * 119.99475 * 355.06776 * 14 12 11 16 16 C 1.37874 * 119.99979 * 175.06283 * 14 12 11 17 17 N 1.31514 * 120.00095 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99689 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47253 * 120.00032 * 18 16 14 21 21 H 1.48501 * 109.46931 * 240.00131 * 18 16 14 22 22 C 1.47027 * 125.64448 * 180.02562 * 9 7 6 23 23 C 1.53000 * 117.49966 * 280.06133 * 4 2 1 24 24 C 1.53002 * 117.50083 * 211.40240 * 4 2 1 25 25 H 1.09004 * 109.46895 * 288.27153 * 1 2 3 26 26 H 1.08998 * 109.47226 * 48.26989 * 1 2 3 27 27 H 1.08994 * 109.47364 * 168.26903 * 1 2 3 28 28 H 1.09002 * 109.46967 * 183.95558 * 3 2 1 29 29 H 1.09004 * 109.46830 * 303.95201 * 3 2 1 30 30 H 1.08997 * 109.47240 * 63.95147 * 3 2 1 31 31 H 1.09003 * 109.47446 * 198.81542 * 5 4 2 32 32 H 1.09000 * 109.47526 * 318.81664 * 5 4 2 33 33 H 0.96999 * 120.00286 * 354.93805 * 6 5 4 34 34 H 1.08996 * 110.36206 * 274.74523 * 10 9 7 35 35 H 1.08999 * 110.36428 * 37.06851 * 10 9 7 36 36 H 1.08996 * 111.19032 * 279.18987 * 11 10 9 37 37 H 1.09002 * 110.93365 * 155.29085 * 11 10 9 38 38 H 0.96705 * 113.99720 * 185.02508 * 13 12 11 39 39 H 0.96997 * 119.99539 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.87976 * 300.43898 * 22 9 7 41 41 H 1.09000 * 109.88109 * 61.45420 * 22 9 7 42 42 H 1.09005 * 117.49961 * 0.02562 * 23 4 2 43 43 H 1.08999 * 117.49857 * 145.01984 * 23 4 2 44 44 H 1.09000 * 117.50264 * 214.97819 * 24 4 2 45 45 H 1.09005 * 117.49470 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.7022 -2.2674 1.1144 6 7 2.6309 -2.9322 0.1970 7 6 2.6277 -4.2759 0.0913 8 8 1.8538 -4.9362 0.7570 9 7 3.4817 -4.8874 -0.7532 10 6 4.4634 -4.2117 -1.6211 11 6 5.5588 -5.2787 -1.8823 12 6 4.7094 -6.5721 -1.9962 13 8 4.1696 -6.7081 -3.3123 14 6 5.5255 -7.7845 -1.6288 15 1 6.5789 -7.6815 -1.4140 16 6 4.9273 -9.0252 -1.5667 17 7 3.6444 -9.1505 -1.8276 18 14 5.9388 -10.5280 -1.1105 19 1 7.3460 -10.1218 -0.8656 20 1 5.3804 -11.1459 0.1189 21 1 5.8942 -11.5109 -2.2227 22 6 3.5839 -6.3385 -0.9665 23 6 2.0272 -0.0733 2.5015 24 6 3.3300 -0.3159 1.7353 25 1 -0.3633 0.3222 0.9759 26 1 -0.3633 0.6840 -0.7669 27 1 -0.3634 -1.0061 -0.2089 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.8260 -2.6773 2.1168 32 1 0.6786 -2.4326 0.7782 33 1 3.2482 -2.4055 -0.3344 34 1 3.9958 -3.9075 -2.5575 35 1 4.8897 -3.3481 -1.1108 36 1 6.2554 -5.3410 -1.0464 37 1 6.0868 -5.0747 -2.8139 38 1 3.5687 -7.4588 -3.4153 39 1 3.2237 -10.0234 -1.7842 40 1 3.8316 -6.8345 -0.0280 41 1 2.6399 -6.7240 -1.3515 42 1 1.6571 0.9506 2.5548 43 1 1.8396 -0.6874 3.3823 44 1 3.9990 -1.0895 2.1124 45 1 3.8176 0.5483 1.2841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922987822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:36 Heat of formation + Delta-G solvation = -57.593416 kcal Electronic energy + Delta-G solvation = -25098.496560 eV Core-core repulsion = 21537.368382 eV Total energy + Delta-G solvation = -3561.128178 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36690 -40.34802 -39.01880 -36.04692 -35.56379 -34.42000 -34.21638 -31.72995 -29.73236 -29.12280 -27.69226 -26.46017 -24.99878 -24.11038 -23.37347 -21.44834 -20.96818 -20.18403 -19.17103 -18.79042 -17.80097 -17.33328 -16.89973 -16.65996 -16.34505 -16.03218 -15.48778 -15.15121 -15.13167 -14.75444 -14.68396 -14.60579 -14.10157 -13.76541 -13.62238 -13.48872 -13.25506 -13.19166 -12.86113 -12.76532 -12.51979 -12.36142 -12.32176 -12.23588 -12.06985 -12.00832 -11.82110 -11.34698 -11.16613 -11.11489 -10.64782 -10.27341 -10.20795 -9.37295 -9.16796 -8.24807 -6.40758 1.40930 1.44091 1.55029 1.64344 2.15886 2.38905 2.62332 2.90318 3.02026 3.20866 3.55383 3.68159 3.82153 3.96070 4.07864 4.19615 4.24662 4.40206 4.41533 4.56094 4.59427 4.61837 4.62752 4.66798 4.70699 4.74374 4.84491 4.89240 5.04582 5.07162 5.13013 5.14920 5.18614 5.26964 5.37643 5.50554 5.52213 5.76217 6.04022 6.05056 6.08134 6.21407 6.66592 7.08808 7.29007 7.36421 7.58518 8.81538 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.003304 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.358174 B = 8471.321953 C = 8605.454447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.519 5.519 3 C 0.016 3.984 4 C 0.022 3.978 5 C 0.189 3.811 6 N -0.718 5.718 7 C 0.710 3.290 8 O -0.648 6.648 9 N -0.635 5.635 10 C 0.110 3.890 11 C -0.109 4.109 12 C 0.233 3.767 13 O -0.587 6.587 14 C -0.556 4.556 15 H 0.068 0.932 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.964 3.036 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.278 1.278 22 C 0.144 3.856 23 C -0.189 4.189 24 C -0.158 4.158 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.409 0.591 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.375 0.625 39 H 0.269 0.731 40 H 0.028 0.972 41 H 0.025 0.975 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 22.130 4.660 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.242 5.242 3 C -0.131 4.131 4 C -0.069 4.069 5 C 0.064 3.936 6 N -0.375 5.375 7 C 0.411 3.589 8 O -0.531 6.531 9 N -0.372 5.372 10 C -0.012 4.012 11 C -0.147 4.147 12 C 0.192 3.808 13 O -0.394 6.394 14 C -0.594 4.594 15 H 0.086 0.914 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.789 3.211 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.203 1.203 22 C 0.020 3.980 23 C -0.229 4.229 24 C -0.196 4.196 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.224 0.776 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.217 21.899 4.609 22.412 hybrid contribution -0.451 -1.346 0.837 1.648 sum -1.667 20.553 5.445 21.328 Atomic orbital electron populations 1.22394 0.86588 1.02298 1.01117 1.61821 1.08490 1.14632 1.39244 1.22622 1.01595 0.87409 1.01520 1.21803 1.03167 0.91679 0.90273 1.20478 0.92303 0.88207 0.92597 1.44804 1.42393 1.03043 1.47211 1.15745 0.80453 0.82695 0.79960 1.90837 1.45123 1.65928 1.51174 1.47885 1.38414 1.08432 1.42489 1.22410 0.88904 0.95942 0.93946 1.22753 0.96554 0.92748 1.02668 1.19731 0.88372 0.93455 0.79205 1.86096 1.66780 1.53877 1.32693 1.21867 0.96534 0.92805 1.48206 0.91374 1.25837 0.95958 1.02118 0.93749 1.69825 1.11092 1.25443 1.49178 0.85412 0.79159 0.78867 0.77626 1.18743 1.21071 1.20322 1.22323 0.99234 0.77492 0.98992 1.23554 1.01682 1.02563 0.95107 1.23371 0.90262 1.03982 1.01958 0.94551 0.89999 0.92708 0.90194 0.90300 0.94311 0.91942 0.92859 0.75406 0.91340 0.88226 0.89724 0.89102 0.77648 0.92158 0.95325 0.95630 0.87080 0.88230 0.88412 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.37 127.69 1.20 1.59 16 2 N -0.52 -9.03 5.16 -898.68 -4.64 -13.67 16 3 C 0.02 0.19 8.59 127.69 1.10 1.28 16 4 C 0.02 0.40 1.76 3.53 0.01 0.41 16 5 C 0.19 4.98 5.67 86.38 0.49 5.47 16 6 N -0.72 -21.80 5.49 -478.54 -2.63 -24.43 16 7 C 0.71 29.81 8.49 179.05 1.52 31.33 16 8 O -0.65 -33.20 16.67 -3.97 -0.07 -33.27 16 9 N -0.64 -27.02 3.32 -829.30 -2.76 -29.78 16 10 C 0.11 3.68 6.58 86.93 0.57 4.25 16 11 C -0.11 -4.19 6.24 32.06 0.20 -3.99 16 12 C 0.23 11.45 0.85 -10.35 -0.01 11.44 16 13 O -0.59 -30.10 13.07 -148.98 -1.95 -32.05 16 14 C -0.56 -29.54 8.13 25.60 0.21 -29.33 16 15 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 16 C 0.02 1.29 5.28 84.65 0.45 1.74 16 17 N -0.92 -50.95 10.96 21.45 0.24 -50.72 16 18 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 22 C 0.14 7.39 5.23 86.73 0.45 7.85 16 23 C -0.19 -2.72 9.47 30.62 0.29 -2.43 16 24 C -0.16 -2.34 9.45 30.62 0.29 -2.05 16 25 H 0.04 0.54 8.01 -2.38 -0.02 0.52 16 26 H 0.08 1.10 7.98 -2.39 -0.02 1.08 16 27 H 0.05 1.10 7.00 -2.39 -0.02 1.08 16 28 H 0.08 0.85 6.29 -2.39 -0.02 0.84 16 29 H 0.08 0.83 8.04 -2.38 -0.02 0.81 16 30 H 0.04 0.39 6.39 -2.39 -0.02 0.38 16 31 H 0.06 1.76 7.96 -2.39 -0.02 1.74 16 32 H 0.05 1.55 6.73 -2.39 -0.02 1.54 16 33 H 0.41 10.43 6.95 -92.71 -0.64 9.78 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.10 2.48 7.29 -2.39 -0.02 2.47 16 36 H 0.08 3.09 8.04 -2.39 -0.02 3.07 16 37 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.37 20.13 7.45 -74.05 -0.55 19.58 16 39 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.03 1.63 7.82 -2.38 -0.02 1.61 16 41 H 0.03 1.47 7.92 -2.39 -0.02 1.45 16 42 H 0.11 1.30 6.60 -2.38 -0.02 1.28 16 43 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 44 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.12 1.36 5.98 -2.38 -0.01 1.35 16 Total: -1.00 -68.14 355.71 -3.21 -71.35 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -0.19 Total: 40.32 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 6.76 Total: 27.57 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -9.79 Total: -118.60 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: -2.01 Total: -65.32 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -68.14 -3.21 -71.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922987822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.752 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds