Wall clock time and date at job start Fri Apr 10 2020 17:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36940 * 120.00128 * 2 1 4 4 H 1.08000 * 120.00195 * 196.06092 * 3 2 1 5 5 C 1.38804 * 120.00188 * 16.05642 * 3 2 1 6 6 N 1.31629 * 119.99836 * 16.09145 * 5 3 2 7 7 Si 1.86798 * 120.00599 * 196.09166 * 5 3 2 8 8 H 1.48498 * 109.47428 * 89.99848 * 7 5 3 9 9 H 1.48498 * 109.47520 * 210.00136 * 7 5 3 10 10 H 1.48499 * 109.46731 * 330.00291 * 7 5 3 11 11 C 1.46506 * 120.00003 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.88414 * 183.87714 * 11 2 1 13 13 C 1.55155 * 111.00319 * 307.80238 * 11 2 1 14 14 C 1.54322 * 102.94018 * 153.57827 * 13 11 2 15 15 N 1.47020 * 107.26987 * 337.80296 * 14 13 11 16 16 C 1.34779 * 125.64406 * 179.20944 * 15 14 13 17 17 O 1.21280 * 120.00262 * 354.57704 * 16 15 14 18 18 C 1.50702 * 119.99876 * 174.57829 * 16 15 14 19 19 H 1.08998 * 109.50726 * 53.04124 * 18 16 15 20 20 C 1.53103 * 109.50612 * 292.95339 * 18 16 15 21 21 N 1.47009 * 109.25398 * 183.21595 * 20 18 16 22 22 C 1.46901 * 110.99737 * 182.39068 * 21 20 18 23 23 C 1.47012 * 110.75519 * 58.61863 * 21 20 18 24 24 C 1.53091 * 109.25785 * 301.37682 * 23 21 20 25 25 O 1.43019 * 109.50699 * 173.16892 * 18 16 15 26 26 C 1.47415 * 108.70593 * 358.94537 * 15 14 13 27 27 H 1.09007 * 109.47031 * 275.52497 * 1 2 3 28 28 H 1.09002 * 109.47661 * 35.52131 * 1 2 3 29 29 H 1.08997 * 109.47392 * 155.52421 * 1 2 3 30 30 H 0.96999 * 120.00044 * 180.02562 * 6 5 3 31 31 H 1.08997 * 110.71936 * 271.93647 * 13 11 2 32 32 H 1.08999 * 110.72020 * 35.03669 * 13 11 2 33 33 H 1.09003 * 109.87846 * 218.38813 * 14 13 11 34 34 H 1.08999 * 109.88589 * 97.22526 * 14 13 11 35 35 H 1.08997 * 109.50088 * 303.14824 * 20 18 16 36 36 H 1.08992 * 109.50543 * 63.27845 * 20 18 16 37 37 H 1.09005 * 109.47117 * 59.99793 * 22 21 20 38 38 H 1.09000 * 109.47311 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47157 * 300.00442 * 22 21 20 40 40 H 1.09002 * 109.51011 * 61.31600 * 23 21 20 41 41 H 1.08999 * 109.50773 * 181.44764 * 23 21 20 42 42 H 1.09003 * 109.50944 * 176.78321 * 24 23 21 43 43 H 1.08999 * 109.51123 * 296.92036 * 24 23 21 44 44 H 1.09007 * 110.36836 * 142.96498 * 26 15 14 45 45 H 1.09008 * 110.36854 * 265.28940 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1980 1.2042 -0.2588 5 6 1.4963 2.3646 0.3325 6 7 0.3321 2.3215 0.9452 7 14 2.2690 4.0121 -0.0896 8 1 1.8221 4.4369 -1.4405 9 1 1.8510 5.0260 0.9116 10 1 3.7483 3.8830 -0.0755 11 6 2.1974 -1.2688 -0.0006 12 1 3.2716 -1.0973 0.0684 13 6 1.7066 -2.1948 1.1435 14 6 2.0243 -3.6061 0.6061 15 7 2.1175 -3.5051 -0.8576 16 6 2.3966 -4.5204 -1.6989 17 8 2.6927 -5.6103 -1.2568 18 6 2.3407 -4.3015 -3.1889 19 1 2.9583 -3.4435 -3.4541 20 6 0.8930 -4.0402 -3.6132 21 7 0.8336 -3.9041 -5.0758 22 6 -0.5320 -3.5955 -5.5207 23 6 1.3402 -5.1176 -5.7329 24 6 2.7833 -5.3681 -5.2874 25 8 2.8264 -5.4666 -3.8613 26 6 1.8488 -2.1106 -1.2533 27 1 -0.3633 0.0989 1.0230 28 1 -0.3634 0.8364 -0.5971 29 1 -0.3634 -0.9353 -0.4258 30 1 -0.1247 3.1451 1.1772 31 1 2.2592 -1.9986 2.0623 32 1 0.6357 -2.0730 1.3057 33 1 1.2256 -4.2955 0.8800 34 1 2.9731 -3.9536 1.0149 35 1 0.2656 -4.8744 -3.2995 36 1 0.5375 -3.1212 -3.1473 37 1 -0.8584 -2.6588 -5.0689 38 1 -0.5475 -3.4997 -6.6064 39 1 -1.2033 -4.3987 -5.2168 40 1 0.7199 -5.9691 -5.4532 41 1 1.3111 -4.9850 -6.8145 42 1 3.1440 -6.2979 -5.7275 43 1 3.4140 -4.5413 -5.6143 44 1 2.4846 -1.8249 -2.0914 45 1 0.7977 -1.9859 -1.5137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971269829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:51 Heat of formation + Delta-G solvation = -50.765767 kcal Electronic energy + Delta-G solvation = -25517.010391 eV Core-core repulsion = 21956.178283 eV Total energy + Delta-G solvation = -3560.832108 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65349 -40.17709 -38.82243 -36.80525 -36.45854 -33.64050 -32.83632 -31.19095 -29.71668 -29.29164 -28.03392 -26.46686 -25.15571 -25.02084 -23.55246 -21.68698 -21.00891 -20.50294 -18.92594 -18.49006 -17.68587 -17.40596 -17.19021 -16.57907 -16.48932 -16.11465 -15.93459 -15.39212 -15.18165 -14.93141 -14.72402 -14.58169 -14.36329 -14.21133 -13.81575 -13.51846 -13.32766 -13.00373 -12.89588 -12.79538 -12.77021 -12.46349 -12.44703 -12.32490 -12.15050 -12.04819 -11.83312 -11.78941 -11.43831 -10.93316 -10.80652 -10.58376 -9.76529 -9.53265 -8.83674 -7.80603 -5.22922 1.36186 1.51375 1.53088 1.58536 1.61265 2.52582 2.67615 2.83976 3.31447 3.37963 3.59388 3.69685 3.81197 3.86646 3.92030 3.96756 4.08866 4.19961 4.27983 4.30745 4.39335 4.47017 4.52441 4.57842 4.61481 4.68519 4.76909 4.78830 4.88406 4.89397 4.99350 4.99623 5.12248 5.23019 5.31037 5.45799 5.66889 5.74977 5.79792 5.87744 5.96799 6.30964 6.38048 6.97229 7.17219 7.88399 8.29143 9.23007 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.004118 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.695729 B = 6798.480070 C = 7615.857904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.599 5.599 3 C -0.261 4.261 4 H 0.078 0.922 5 C -0.049 4.049 6 N -0.937 5.937 7 Si 0.964 3.036 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.166 3.834 12 H 0.078 0.922 13 C -0.139 4.139 14 C 0.117 3.883 15 N -0.606 5.606 16 C 0.534 3.466 17 O -0.568 6.568 18 C 0.088 3.912 19 H 0.102 0.898 20 C 0.037 3.963 21 N -0.547 5.547 22 C 0.024 3.976 23 C 0.015 3.985 24 C 0.056 3.944 25 O -0.386 6.386 26 C 0.089 3.911 27 H 0.003 0.997 28 H 0.022 0.978 29 H 0.031 0.969 30 H 0.247 0.753 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.029 0.971 40 H 0.039 0.961 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -12.586 -12.788 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.321 5.321 3 C -0.391 4.391 4 H 0.095 0.905 5 C -0.244 4.244 6 N -0.584 5.584 7 Si 0.793 3.207 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.194 1.194 11 C 0.057 3.943 12 H 0.096 0.904 13 C -0.179 4.179 14 C -0.005 4.005 15 N -0.340 5.340 16 C 0.322 3.678 17 O -0.447 6.447 18 C 0.027 3.973 19 H 0.119 0.881 20 C -0.092 4.092 21 N -0.272 5.272 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.021 4.021 25 O -0.305 6.305 26 C -0.036 4.036 27 H 0.021 0.979 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.765 -12.843 -12.600 18.008 hybrid contribution -0.560 0.641 0.364 0.926 sum 0.206 -12.202 -12.235 17.281 Atomic orbital electron populations 1.20528 0.82281 0.95972 0.97746 1.44025 1.02156 1.00666 1.85224 1.19606 0.95252 0.85210 1.39051 0.90466 1.25561 0.98163 1.01066 0.99637 1.70275 1.17952 1.26504 1.43654 0.85308 0.78329 0.80060 0.76992 1.21396 1.22690 1.19435 1.21524 0.96084 0.84758 0.91984 0.90418 1.23073 1.02252 0.92797 0.99802 1.21922 1.01785 0.97820 0.79007 1.48387 1.68643 1.09329 1.07681 1.20094 0.76570 0.82913 0.88229 1.90672 1.49154 1.25922 1.78935 1.21800 0.96632 0.90264 0.88629 0.88087 1.22558 0.94386 1.02139 0.90106 1.62241 1.24609 1.35960 1.04371 1.22461 0.86518 1.00935 1.02454 1.22927 0.96286 0.90696 1.01364 1.23041 0.95941 1.04275 0.78799 1.88067 1.84651 1.37384 1.20365 1.23011 1.01611 0.79061 0.99909 0.97903 0.95927 0.95017 0.94369 0.90106 0.91139 0.91245 0.91184 0.94624 0.88422 0.90886 0.89109 0.95283 0.94304 0.86668 0.85755 0.91148 0.89712 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.08 7.56 127.77 0.97 9.05 16 2 N -0.60 -27.02 2.97 -695.04 -2.06 -29.08 16 3 C -0.26 -13.27 9.68 84.03 0.81 -12.46 16 4 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 5 C -0.05 -2.60 5.07 84.86 0.43 -2.17 16 6 N -0.94 -52.69 10.49 21.65 0.23 -52.46 16 7 Si 0.96 43.04 29.58 68.60 2.03 45.07 16 8 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 9 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 C 0.17 5.92 3.53 46.38 0.16 6.08 16 12 H 0.08 2.82 7.92 -2.39 -0.02 2.80 16 13 C -0.14 -4.42 6.50 31.78 0.21 -4.21 16 14 C 0.12 3.41 6.87 86.73 0.60 4.00 16 15 N -0.61 -18.20 3.33 -811.80 -2.70 -20.90 16 16 C 0.53 17.33 7.19 87.66 0.63 17.96 16 17 O -0.57 -22.66 16.85 15.89 0.27 -22.39 16 18 C 0.09 2.38 2.60 29.88 0.08 2.45 16 19 H 0.10 2.53 7.45 -2.39 -0.02 2.51 16 20 C 0.04 0.88 4.82 86.32 0.42 1.29 16 21 N -0.55 -10.88 4.99 -921.46 -4.59 -15.47 16 22 C 0.02 0.38 9.60 127.69 1.23 1.61 16 23 C 0.02 0.25 5.66 86.31 0.49 0.74 16 24 C 0.06 1.02 7.01 72.01 0.50 1.52 16 25 O -0.39 -10.82 10.01 -130.06 -1.30 -12.13 16 26 C 0.09 2.65 5.21 86.86 0.45 3.10 16 27 H 0.00 0.13 7.49 -2.38 -0.02 0.12 16 28 H 0.02 1.12 6.97 -2.39 -0.02 1.10 16 29 H 0.03 1.19 6.37 -2.39 -0.02 1.17 16 30 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.35 6.98 -2.39 -0.02 2.34 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 2.30 6.05 -2.39 -0.01 2.28 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 2.37 7.32 -2.38 -0.02 2.35 16 45 H 0.07 2.23 5.45 -2.38 -0.01 2.22 16 Total: -1.00 -65.61 348.53 -0.20 -65.81 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.97 Total: 12.60 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 6.97 Total: 28.95 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -9.13 Total: -117.92 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.03 Total: -34.52 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.61 -0.20 -65.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971269829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.045 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds