Wall clock time and date at job start Fri Apr 10 2020 17:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 119.99668 * 2 1 4 4 H 1.08000 * 119.99780 * 148.52287 * 3 2 1 5 5 C 1.38815 * 119.99802 * 328.51401 * 3 2 1 6 6 N 1.31622 * 119.99733 * 153.82701 * 5 3 2 7 7 Si 1.86803 * 120.00260 * 333.82493 * 5 3 2 8 8 H 1.48494 * 109.46744 * 94.88498 * 7 5 3 9 9 H 1.48498 * 109.47107 * 214.88474 * 7 5 3 10 10 H 1.48502 * 109.46788 * 334.88641 * 7 5 3 11 11 C 1.46491 * 120.00313 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88928 * 183.88202 * 11 2 1 13 13 C 1.55160 * 111.03932 * 307.78694 * 11 2 1 14 14 C 1.54320 * 102.94694 * 153.59150 * 13 11 2 15 15 N 1.47030 * 107.26621 * 337.80432 * 14 13 11 16 16 C 1.34777 * 125.64668 * 179.20875 * 15 14 13 17 17 O 1.21282 * 120.00103 * 179.69014 * 16 15 14 18 18 C 1.50706 * 119.99889 * 359.69198 * 16 15 14 19 19 N 1.46900 * 109.46954 * 180.02562 * 18 16 15 20 20 C 1.47010 * 110.99492 * 293.62883 * 19 18 16 21 21 C 1.53103 * 109.25854 * 177.61070 * 20 19 18 22 22 O 1.43018 * 109.25674 * 56.84917 * 21 20 19 23 23 C 1.43019 * 113.73714 * 301.33449 * 22 21 20 24 24 C 1.47019 * 110.99892 * 169.99999 * 19 18 16 25 25 C 1.47426 * 108.70526 * 358.94415 * 15 14 13 26 26 H 1.09006 * 109.47130 * 275.54761 * 1 2 3 27 27 H 1.08996 * 109.47339 * 35.54607 * 1 2 3 28 28 H 1.08998 * 109.47162 * 155.55255 * 1 2 3 29 29 H 0.96996 * 120.00013 * 180.02562 * 6 5 3 30 30 H 1.09010 * 110.71865 * 271.95254 * 13 11 2 31 31 H 1.08993 * 110.71849 * 35.22181 * 13 11 2 32 32 H 1.08995 * 109.88193 * 218.39511 * 14 13 11 33 33 H 1.08996 * 109.88709 * 97.21947 * 14 13 11 34 34 H 1.09000 * 109.46779 * 299.99901 * 18 16 15 35 35 H 1.08996 * 109.47249 * 59.99972 * 18 16 15 36 36 H 1.09000 * 109.51693 * 297.54577 * 20 19 18 37 37 H 1.09001 * 109.51000 * 57.67943 * 20 19 18 38 38 H 1.09003 * 109.50218 * 296.92223 * 21 20 19 39 39 H 1.08993 * 109.51060 * 176.78655 * 21 20 19 40 40 H 1.08999 * 109.50466 * 298.72833 * 23 22 21 41 41 H 1.09003 * 109.53801 * 178.62812 * 23 22 21 42 42 H 1.09000 * 109.50585 * 302.32513 * 24 19 18 43 43 H 1.09005 * 109.50550 * 62.40678 * 24 19 18 44 44 H 1.08991 * 110.36380 * 142.96540 * 25 15 14 45 45 H 1.08998 * 110.36374 * 265.28890 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1104 1.2548 0.4884 5 6 1.6087 2.2996 -0.6279 6 7 1.9456 3.5081 -0.2296 7 14 0.4029 2.0832 -2.0381 8 1 -0.9857 2.1408 -1.5150 9 1 0.6031 3.1686 -3.0316 10 1 0.6328 0.7681 -2.6884 11 6 2.1975 -1.2686 0.0006 12 1 3.2718 -1.0971 0.0694 13 6 1.7076 -2.1942 1.1455 14 6 2.0260 -3.6057 0.6091 15 7 2.1186 -3.5057 -0.8549 16 6 2.3980 -4.5214 -1.6955 17 8 2.4435 -4.3240 -2.8913 18 6 2.6539 -5.9026 -1.1496 19 7 2.9334 -6.8237 -2.2593 20 6 1.7452 -7.0041 -3.1061 21 6 2.0966 -7.9215 -4.2804 22 8 2.5957 -9.1632 -3.7760 23 6 3.7532 -9.0246 -2.9475 24 6 3.4185 -8.1185 -1.7598 25 6 1.8490 -2.1116 -1.2515 26 1 -0.3634 0.0994 1.0229 27 1 -0.3634 0.8361 -0.5974 28 1 -0.3633 -0.9355 -0.4253 29 1 1.5674 4.2862 -0.6681 30 1 2.2605 -1.9970 2.0641 31 1 0.6362 -2.0751 1.3058 32 1 1.2278 -4.2953 0.8836 33 1 2.9751 -3.9523 1.0177 34 1 3.5109 -5.8743 -0.4768 35 1 1.7750 -6.2463 -0.6042 36 1 0.9448 -7.4547 -2.5192 37 1 1.4183 -6.0361 -3.4857 38 1 2.8593 -7.4465 -4.8976 39 1 1.2045 -8.1041 -4.8793 40 1 4.5639 -8.5818 -3.5261 41 1 4.0598 -10.0049 -2.5825 42 1 4.3131 -7.9639 -1.1566 43 1 2.6452 -8.5865 -1.1506 44 1 2.4843 -1.8261 -2.0899 45 1 0.7978 -1.9878 -1.5115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971355018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:59 Heat of formation + Delta-G solvation = -24.705528 kcal Electronic energy + Delta-G solvation = -24938.618967 eV Core-core repulsion = 21378.916916 eV Total energy + Delta-G solvation = -3559.702052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31582 -39.32795 -37.64769 -35.61702 -35.01954 -31.93885 -31.40659 -30.50244 -29.47916 -28.12037 -26.31413 -25.32653 -24.26031 -23.35563 -22.39067 -20.71650 -19.51035 -19.12935 -17.20051 -17.14162 -16.66749 -16.36048 -16.17065 -15.66425 -15.39525 -15.23264 -15.01657 -14.33424 -14.20795 -13.81505 -13.63267 -13.39080 -12.84942 -12.74225 -12.59011 -12.39921 -12.29759 -12.18371 -12.06129 -11.76261 -11.61019 -11.48994 -10.95804 -10.87432 -10.80800 -10.58396 -10.22381 -10.08543 -10.01000 -9.60511 -9.53789 -8.64938 -8.56533 -8.43796 -7.03693 -6.08100 -3.43483 2.70861 2.89689 3.27094 3.45524 3.49825 3.54723 3.68680 4.43942 4.46363 4.60573 4.71777 4.72133 4.85469 4.88184 4.95010 5.03239 5.10189 5.12535 5.19534 5.27458 5.28320 5.34980 5.42101 5.49957 5.60659 5.67031 5.70656 5.73778 5.82298 6.06093 6.15893 6.23800 6.36516 6.38191 6.54561 6.58710 6.63551 6.65738 6.72706 6.89033 7.67628 7.89949 8.25145 8.29979 8.85958 9.62013 9.97611 11.07287 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.003188 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.554118 B = 8781.411245 C = 9277.243399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.594 5.594 3 C -0.275 4.275 4 H 0.084 0.916 5 C 0.036 3.964 6 N -0.893 5.893 7 Si 0.879 3.121 8 H -0.286 1.286 9 H -0.302 1.302 10 H -0.271 1.271 11 C 0.172 3.828 12 H 0.088 0.912 13 C -0.150 4.150 14 C 0.103 3.897 15 N -0.616 5.616 16 C 0.525 3.475 17 O -0.528 6.528 18 C 0.042 3.958 19 N -0.520 5.520 20 C 0.013 3.987 21 C 0.066 3.934 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.018 3.982 25 C 0.083 3.917 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.265 0.735 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -23.662 0.397 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.316 5.316 3 C -0.403 4.403 4 H 0.102 0.898 5 C -0.165 4.165 6 N -0.534 5.534 7 Si 0.710 3.290 8 H -0.214 1.214 9 H -0.230 1.230 10 H -0.196 1.196 11 C 0.062 3.938 12 H 0.106 0.894 13 C -0.189 4.189 14 C -0.021 4.021 15 N -0.351 5.351 16 C 0.313 3.687 17 O -0.404 6.404 18 C -0.089 4.089 19 N -0.246 5.246 20 C -0.115 4.115 21 C -0.011 4.011 22 O -0.308 6.308 23 C -0.012 4.012 24 C -0.110 4.110 25 C -0.042 4.042 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.760 -23.363 -0.649 23.385 hybrid contribution -1.297 -0.022 -0.111 1.302 sum -0.537 -23.386 -0.759 23.404 Atomic orbital electron populations 1.21339 0.84567 0.98720 0.98893 1.44038 1.00614 1.01344 1.85597 1.18803 1.05715 0.85146 1.30647 0.89812 1.25324 0.98231 0.95023 0.97922 1.69902 1.45702 0.97594 1.40176 0.86960 0.80406 0.77490 0.84106 1.21429 1.22973 1.19594 1.21599 0.96996 0.85179 0.89989 0.89422 1.23140 1.02589 0.92899 1.00307 1.22053 1.00707 0.99151 0.80193 1.48553 1.69422 1.09810 1.07346 1.20048 0.77046 0.85387 0.86247 1.90668 1.51186 1.83634 1.14953 1.21947 1.02282 0.91155 0.93486 1.61847 1.33184 1.10236 1.19290 1.22978 0.90772 1.02275 0.95486 1.22661 0.99656 0.83895 0.94849 1.87962 1.45563 1.30155 1.67102 1.22633 0.88343 0.99430 0.90810 1.22826 1.00840 0.89610 0.97757 1.23137 1.01020 0.79051 1.00950 0.95908 0.94222 0.94627 0.92551 0.90084 0.90619 0.92087 0.91606 0.87771 0.91973 0.94518 0.87550 0.91907 0.88444 0.92097 0.88429 0.89447 0.93889 0.90608 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.28 8.33 59.85 0.50 2.78 16 2 N -0.59 -13.43 2.62 -171.03 -0.45 -13.88 16 3 C -0.28 -7.43 9.89 -15.06 -0.15 -7.58 16 4 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 5 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 6 N -0.89 -26.76 13.97 55.49 0.78 -25.99 16 7 Si 0.88 22.10 25.07 -169.99 -4.26 17.84 16 8 H -0.29 -6.94 6.62 56.52 0.37 -6.57 16 9 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.17 3.15 3.53 -65.78 -0.23 2.92 16 12 H 0.09 1.66 7.96 -51.93 -0.41 1.25 16 13 C -0.15 -2.09 6.50 -24.90 -0.16 -2.25 16 14 C 0.10 1.18 6.49 -3.06 -0.02 1.16 16 15 N -0.62 -9.10 3.33 -170.52 -0.57 -9.66 16 16 C 0.53 7.87 7.56 -10.98 -0.08 7.78 16 17 O -0.53 -9.89 14.61 5.56 0.08 -9.81 16 18 C 0.04 0.46 4.64 -4.97 -0.02 0.44 16 19 N -0.52 -5.97 4.46 -235.75 -1.05 -7.03 16 20 C 0.01 0.15 5.29 -3.71 -0.02 0.13 16 21 C 0.07 0.70 7.01 37.21 0.26 0.96 16 22 O -0.39 -4.28 10.83 -35.23 -0.38 -4.66 16 23 C 0.06 0.56 7.01 37.20 0.26 0.82 16 24 C 0.02 0.15 5.64 -3.71 -0.02 0.13 16 25 C 0.08 1.49 6.46 -2.53 -0.02 1.47 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.92 2.55 -51.93 -0.13 0.79 16 28 H 0.04 0.65 6.37 -51.93 -0.33 0.32 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.08 1.07 6.99 -51.93 -0.36 0.71 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.93 8.04 -51.93 -0.42 0.51 16 35 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 1.47 5.88 -51.93 -0.31 1.17 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 45 H 0.06 1.19 6.43 -51.93 -0.33 0.86 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -32.58 345.61 -7.81 -40.39 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.37 Total: -2.09 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 0.20 Total: 9.68 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -1.29 Total: -56.56 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.30 Total: -14.47 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.26 Total: 17.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.58 -7.81 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971355018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.683 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds