Wall clock time and date at job start Fri Apr 10 2020 17:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 119.99668 * 2 1 4 4 H 1.08000 * 119.99780 * 148.52287 * 3 2 1 5 5 C 1.38815 * 119.99802 * 328.51401 * 3 2 1 6 6 N 1.31622 * 119.99733 * 153.82701 * 5 3 2 7 7 Si 1.86803 * 120.00260 * 333.82493 * 5 3 2 8 8 H 1.48494 * 109.46744 * 94.88498 * 7 5 3 9 9 H 1.48498 * 109.47107 * 214.88474 * 7 5 3 10 10 H 1.48502 * 109.46788 * 334.88641 * 7 5 3 11 11 C 1.46491 * 120.00313 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88928 * 183.88202 * 11 2 1 13 13 C 1.55160 * 111.03932 * 307.78694 * 11 2 1 14 14 C 1.54320 * 102.94694 * 153.59150 * 13 11 2 15 15 N 1.47030 * 107.26621 * 337.80432 * 14 13 11 16 16 C 1.34777 * 125.64668 * 179.20875 * 15 14 13 17 17 O 1.21282 * 120.00103 * 179.69014 * 16 15 14 18 18 C 1.50706 * 119.99889 * 359.69198 * 16 15 14 19 19 N 1.46900 * 109.46954 * 180.02562 * 18 16 15 20 20 C 1.47010 * 110.99492 * 293.62883 * 19 18 16 21 21 C 1.53103 * 109.25854 * 177.61070 * 20 19 18 22 22 O 1.43018 * 109.25674 * 56.84917 * 21 20 19 23 23 C 1.43019 * 113.73714 * 301.33449 * 22 21 20 24 24 C 1.47019 * 110.99892 * 169.99999 * 19 18 16 25 25 C 1.47426 * 108.70526 * 358.94415 * 15 14 13 26 26 H 1.09006 * 109.47130 * 275.54761 * 1 2 3 27 27 H 1.08996 * 109.47339 * 35.54607 * 1 2 3 28 28 H 1.08998 * 109.47162 * 155.55255 * 1 2 3 29 29 H 0.96996 * 120.00013 * 180.02562 * 6 5 3 30 30 H 1.09010 * 110.71865 * 271.95254 * 13 11 2 31 31 H 1.08993 * 110.71849 * 35.22181 * 13 11 2 32 32 H 1.08995 * 109.88193 * 218.39511 * 14 13 11 33 33 H 1.08996 * 109.88709 * 97.21947 * 14 13 11 34 34 H 1.09000 * 109.46779 * 299.99901 * 18 16 15 35 35 H 1.08996 * 109.47249 * 59.99972 * 18 16 15 36 36 H 1.09000 * 109.51693 * 297.54577 * 20 19 18 37 37 H 1.09001 * 109.51000 * 57.67943 * 20 19 18 38 38 H 1.09003 * 109.50218 * 296.92223 * 21 20 19 39 39 H 1.08993 * 109.51060 * 176.78655 * 21 20 19 40 40 H 1.08999 * 109.50466 * 298.72833 * 23 22 21 41 41 H 1.09003 * 109.53801 * 178.62812 * 23 22 21 42 42 H 1.09000 * 109.50585 * 302.32513 * 24 19 18 43 43 H 1.09005 * 109.50550 * 62.40678 * 24 19 18 44 44 H 1.08991 * 110.36380 * 142.96540 * 25 15 14 45 45 H 1.08998 * 110.36374 * 265.28890 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1104 1.2548 0.4884 5 6 1.6087 2.2996 -0.6279 6 7 1.9456 3.5081 -0.2296 7 14 0.4029 2.0832 -2.0381 8 1 -0.9857 2.1408 -1.5150 9 1 0.6031 3.1686 -3.0316 10 1 0.6328 0.7681 -2.6884 11 6 2.1975 -1.2686 0.0006 12 1 3.2718 -1.0971 0.0694 13 6 1.7076 -2.1942 1.1455 14 6 2.0260 -3.6057 0.6091 15 7 2.1186 -3.5057 -0.8549 16 6 2.3980 -4.5214 -1.6955 17 8 2.4435 -4.3240 -2.8913 18 6 2.6539 -5.9026 -1.1496 19 7 2.9334 -6.8237 -2.2593 20 6 1.7452 -7.0041 -3.1061 21 6 2.0966 -7.9215 -4.2804 22 8 2.5957 -9.1632 -3.7760 23 6 3.7532 -9.0246 -2.9475 24 6 3.4185 -8.1185 -1.7598 25 6 1.8490 -2.1116 -1.2515 26 1 -0.3634 0.0994 1.0229 27 1 -0.3634 0.8361 -0.5974 28 1 -0.3633 -0.9355 -0.4253 29 1 1.5674 4.2862 -0.6681 30 1 2.2605 -1.9970 2.0641 31 1 0.6362 -2.0751 1.3058 32 1 1.2278 -4.2953 0.8836 33 1 2.9751 -3.9523 1.0177 34 1 3.5109 -5.8743 -0.4768 35 1 1.7750 -6.2463 -0.6042 36 1 0.9448 -7.4547 -2.5192 37 1 1.4183 -6.0361 -3.4857 38 1 2.8593 -7.4465 -4.8976 39 1 1.2045 -8.1041 -4.8793 40 1 4.5639 -8.5818 -3.5261 41 1 4.0598 -10.0049 -2.5825 42 1 4.3131 -7.9639 -1.1566 43 1 2.6452 -8.5865 -1.1506 44 1 2.4843 -1.8261 -2.0899 45 1 0.7978 -1.9878 -1.5115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971355018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:59 Heat of formation + Delta-G solvation = -49.671774 kcal Electronic energy + Delta-G solvation = -24939.701585 eV Core-core repulsion = 21378.916916 eV Total energy + Delta-G solvation = -3560.784669 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36036 -40.28670 -38.95188 -36.72538 -36.40775 -33.84861 -32.14150 -31.88312 -30.47986 -29.32187 -28.11937 -26.43215 -25.01119 -24.82927 -23.66445 -21.48880 -21.01894 -20.23043 -19.04468 -18.25216 -17.87389 -17.47235 -17.14878 -16.90560 -16.53671 -16.18293 -16.00378 -15.64411 -15.35758 -14.87671 -14.74009 -14.70931 -14.48659 -14.36637 -14.12450 -13.66935 -13.49446 -13.37756 -13.12240 -13.04138 -12.57213 -12.45050 -12.37477 -12.28425 -12.27512 -12.05750 -11.60020 -11.57462 -11.45143 -11.01650 -10.63624 -10.57349 -9.68096 -9.41138 -8.90969 -8.25427 -5.55658 1.25181 1.39658 1.48260 1.59857 1.82127 2.36936 2.73892 2.95078 2.99134 3.28197 3.47890 3.83042 3.90575 3.94735 3.99421 4.11597 4.16135 4.19667 4.23982 4.28220 4.36068 4.41328 4.45300 4.50093 4.62588 4.67679 4.73182 4.74302 4.80684 4.85096 4.88755 4.94743 4.98496 4.99381 5.19132 5.26670 5.35813 5.76195 5.85783 5.91497 6.11393 6.15023 6.56790 6.89441 7.16525 7.57631 7.96256 8.94463 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.003188 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.554118 B = 8781.411245 C = 9277.243399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.608 5.608 3 C -0.260 4.260 4 H 0.054 0.946 5 C -0.019 4.019 6 N -0.941 5.941 7 Si 0.940 3.060 8 H -0.270 1.270 9 H -0.311 1.311 10 H -0.272 1.272 11 C 0.164 3.836 12 H 0.073 0.927 13 C -0.137 4.137 14 C 0.106 3.894 15 N -0.616 5.616 16 C 0.519 3.481 17 O -0.575 6.575 18 C 0.053 3.947 19 N -0.543 5.543 20 C 0.018 3.982 21 C 0.068 3.932 22 O -0.402 6.402 23 C 0.058 3.942 24 C 0.021 3.979 25 C 0.093 3.907 26 H 0.035 0.965 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.264 0.736 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -27.116 1.897 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.331 5.331 3 C -0.390 4.390 4 H 0.072 0.928 5 C -0.216 4.216 6 N -0.585 5.585 7 Si 0.770 3.230 8 H -0.197 1.197 9 H -0.240 1.240 10 H -0.197 1.197 11 C 0.056 3.944 12 H 0.092 0.908 13 C -0.176 4.176 14 C -0.016 4.016 15 N -0.351 5.351 16 C 0.308 3.692 17 O -0.455 6.455 18 C -0.078 4.078 19 N -0.269 5.269 20 C -0.110 4.110 21 C -0.009 4.009 22 O -0.321 6.321 23 C -0.019 4.019 24 C -0.106 4.106 25 C -0.033 4.033 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.150 0.850 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.072 0.928 41 H 0.142 0.858 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.056 -26.888 0.888 26.903 hybrid contribution -0.983 0.974 -0.532 1.482 sum -0.927 -25.915 0.355 25.934 Atomic orbital electron populations 1.21381 0.83377 0.99312 0.99482 1.44109 1.01503 1.01422 1.86024 1.18761 1.04589 0.86888 1.28739 0.92810 1.25870 1.00826 0.94817 1.00055 1.70005 1.48360 0.98363 1.41804 0.85970 0.79409 0.76642 0.80947 1.19723 1.24048 1.19690 1.21694 0.96099 0.84296 0.92356 0.90837 1.23032 1.02778 0.92972 0.98861 1.22273 1.03647 0.98038 0.77638 1.48601 1.69236 1.08234 1.09006 1.20932 0.75789 0.86790 0.85665 1.90657 1.53105 1.84511 1.17211 1.21959 1.04459 0.87974 0.93380 1.61805 1.33178 1.11885 1.20070 1.22832 0.91321 1.00886 0.96007 1.22635 0.99845 0.83788 0.94585 1.87945 1.46430 1.30126 1.67612 1.22863 0.87378 1.00975 0.90634 1.22897 1.01851 0.88063 0.97821 1.22698 0.99622 0.81521 0.99463 0.94629 0.96317 0.91746 0.92708 0.88752 0.90302 0.88672 0.88600 0.85028 0.89457 0.93764 0.90357 0.93219 0.87180 0.92792 0.85837 0.87336 0.92906 0.93957 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.35 8.33 127.77 1.06 5.41 16 2 N -0.61 -27.22 2.62 -695.02 -1.82 -29.04 16 3 C -0.26 -14.36 9.89 84.03 0.83 -13.53 16 4 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 5 C -0.02 -1.08 5.29 84.86 0.45 -0.63 16 6 N -0.94 -58.17 13.97 21.65 0.30 -57.86 16 7 Si 0.94 46.70 25.07 68.60 1.72 48.42 16 8 H -0.27 -12.57 6.62 99.48 0.66 -11.91 16 9 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 10 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 11 C 0.16 5.85 3.53 46.39 0.16 6.01 16 12 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 13 C -0.14 -3.37 6.50 31.78 0.21 -3.16 16 14 C 0.11 1.94 6.49 86.73 0.56 2.50 16 15 N -0.62 -16.72 3.33 -811.79 -2.70 -19.42 16 16 C 0.52 14.55 7.56 87.66 0.66 15.21 16 17 O -0.58 -21.66 14.61 -3.04 -0.04 -21.70 16 18 C 0.05 0.94 4.64 85.56 0.40 1.34 16 19 N -0.54 -11.11 4.46 -899.77 -4.01 -15.13 16 20 C 0.02 0.39 5.29 86.32 0.46 0.84 16 21 C 0.07 1.39 7.01 72.02 0.50 1.89 16 22 O -0.40 -8.12 10.83 -148.98 -1.61 -9.74 16 23 C 0.06 0.85 7.01 72.01 0.50 1.36 16 24 C 0.02 0.29 5.64 86.31 0.49 0.77 16 25 C 0.09 3.28 6.46 86.85 0.56 3.84 16 26 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.02 0.84 2.55 -2.39 -0.01 0.83 16 28 H 0.06 2.19 6.37 -2.39 -0.02 2.17 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 30 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.08 1.93 6.99 -2.39 -0.02 1.91 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.13 1.65 8.04 -2.39 -0.02 1.63 16 35 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 2.18 5.88 -2.39 -0.01 2.17 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.03 8.09 -2.39 -0.02 1.01 16 43 H 0.05 0.64 8.14 -2.38 -0.02 0.63 16 44 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 45 H 0.05 2.01 6.43 -2.39 -0.02 1.99 16 Total: -1.00 -74.35 345.61 -0.40 -74.74 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.92 Total: 7.87 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.85 Total: 21.86 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -8.23 Total: -121.45 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.66 Total: -31.44 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.72 Total: 48.42 kcal Total: -74.35 -0.40 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971355018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.069 kcal (2) G-P(sol) polarization free energy of solvation -74.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds