Wall clock time and date at job start Fri Apr 10 2020 17:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46957 * 2 1 4 4 H 1.08996 * 109.46797 * 53.43275 * 3 2 1 5 5 C 1.50703 * 109.46925 * 173.43671 * 3 2 1 6 6 O 1.21273 * 120.00140 * 109.02252 * 5 3 2 7 7 N 1.34775 * 119.99767 * 289.01548 * 5 3 2 8 8 C 1.47425 * 125.64688 * 175.77993 * 7 5 3 9 9 C 1.54908 * 104.83141 * 204.16222 * 8 7 5 10 10 H 1.09004 * 111.00197 * 81.06497 * 9 8 7 11 11 C 1.53001 * 111.00570 * 204.87601 * 9 8 7 12 12 N 1.46498 * 109.47334 * 293.54887 * 11 9 8 13 13 C 1.36932 * 120.00104 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00002 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99955 * 180.02562 * 13 12 11 16 16 N 1.31608 * 120.00054 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99843 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46888 * 89.99791 * 17 15 13 19 19 H 1.48499 * 109.46883 * 209.99835 * 17 15 13 20 20 H 1.48497 * 109.47089 * 330.00120 * 17 15 13 21 21 C 1.55158 * 101.58566 * 322.99115 * 9 8 7 22 22 H 1.09001 * 110.71703 * 277.14227 * 21 9 8 23 23 C 1.52995 * 110.72092 * 153.86298 * 21 9 8 24 24 C 1.47027 * 125.65019 * 355.82226 * 7 5 3 25 25 N 1.46897 * 109.47169 * 293.43500 * 3 2 1 26 26 C 1.46905 * 111.00233 * 323.28863 * 25 3 2 27 27 C 1.46903 * 110.99823 * 87.24063 * 25 3 2 28 28 H 1.08993 * 109.47147 * 313.38883 * 1 2 3 29 29 H 1.09003 * 109.47223 * 73.38656 * 1 2 3 30 30 H 1.08997 * 109.46965 * 193.38705 * 1 2 3 31 31 H 1.09001 * 109.47474 * 240.00584 * 2 1 3 32 32 H 1.08994 * 109.47493 * 119.99626 * 2 1 3 33 33 H 1.08994 * 110.36579 * 323.00719 * 8 7 5 34 34 H 1.08998 * 110.36583 * 85.21838 * 8 7 5 35 35 H 1.09001 * 109.46870 * 53.54733 * 11 9 8 36 36 H 1.08997 * 109.47091 * 173.54493 * 11 9 8 37 37 H 0.97001 * 119.99734 * 0.02562 * 12 11 9 38 38 H 0.97003 * 120.00337 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.47174 * 305.02253 * 23 21 9 40 40 H 1.09004 * 109.47047 * 65.02536 * 23 21 9 41 41 H 1.09000 * 109.46928 * 185.02694 * 23 21 9 42 42 H 1.09005 * 109.87718 * 298.32023 * 24 7 5 43 43 H 1.08998 * 109.87910 * 59.48730 * 24 7 5 44 44 H 1.09005 * 109.46936 * 59.99640 * 26 25 3 45 45 H 1.08992 * 109.47402 * 180.02562 * 26 25 3 46 46 H 1.09002 * 109.46817 * 300.00259 * 26 25 3 47 47 H 1.08998 * 109.46996 * 64.21739 * 27 25 3 48 48 H 1.09005 * 109.46994 * 184.21618 * 27 25 3 49 49 H 1.08999 * 109.47107 * 304.21068 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5838 1.9891 0.8254 5 6 3.5382 1.4457 0.1624 6 8 4.2488 1.7512 -0.7717 7 7 4.0884 1.1091 1.3458 8 6 5.5320 0.9852 1.6179 9 6 5.6263 0.0226 2.8279 10 1 5.5436 -1.0162 2.5081 11 6 6.9210 0.2508 3.6107 12 7 8.0667 -0.1316 2.7818 13 6 9.3386 -0.0128 3.2750 14 1 9.4971 0.3625 4.2752 15 6 10.4243 -0.3747 2.4893 16 7 10.2313 -0.8315 1.2703 17 14 12.1594 -0.2132 3.1625 18 1 12.5463 -1.4759 3.8416 19 1 13.1004 0.0568 2.0458 20 1 12.2107 0.9077 4.1351 21 6 4.3889 0.4481 3.6617 22 1 4.6188 1.3184 4.2763 23 6 3.8944 -0.7125 4.5273 24 6 3.3483 0.8037 2.5790 25 7 1.6839 2.0878 -1.2707 26 6 1.7825 1.1397 -2.3885 27 6 0.3422 2.6822 -1.2015 28 1 -0.3633 0.7059 0.7468 29 1 -0.3634 0.2938 -0.9848 30 1 -0.3633 -0.9997 0.2379 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 6.0457 0.5615 0.7550 34 1 5.9552 1.9574 1.8706 35 1 7.0023 1.3041 3.8792 36 1 6.9094 -0.3552 4.5166 37 1 7.9244 -0.4683 1.8833 38 1 10.9900 -1.0840 0.7211 39 1 3.7013 -1.5800 3.8961 40 1 4.6544 -0.9635 5.2672 41 1 2.9750 -0.4210 5.0351 42 1 2.7720 1.6749 2.8907 43 1 2.6829 -0.0432 2.4118 44 1 1.1027 0.3048 -2.2178 45 1 1.5140 1.6434 -3.3170 46 1 2.8045 0.7673 -2.4599 47 1 0.3373 3.4827 -0.4617 48 1 0.0736 3.0874 -2.1771 49 1 -0.3795 1.9176 -0.9144 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106674501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:18 Heat of formation + Delta-G solvation = -8.831740 kcal Electronic energy + Delta-G solvation = -25486.405622 eV Core-core repulsion = 22063.225004 eV Total energy + Delta-G solvation = -3423.180618 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48361 -38.71412 -37.08320 -34.65525 -33.06397 -32.33231 -31.37842 -29.51123 -28.28868 -27.82552 -26.32553 -25.28167 -23.25884 -23.08147 -21.58866 -20.78355 -19.94588 -19.05140 -17.28478 -16.88360 -16.59493 -15.89023 -15.62081 -15.05985 -14.64799 -14.48722 -14.20557 -13.99360 -13.63258 -13.28425 -13.12380 -13.01529 -12.91458 -12.74719 -12.51003 -12.30623 -12.18900 -12.02683 -11.90539 -11.88129 -11.79673 -11.45747 -11.26533 -11.07480 -11.04383 -10.83652 -10.55631 -10.44864 -10.32447 -9.98722 -9.64079 -9.53221 -8.85121 -8.44596 -8.31651 -6.89915 -5.72878 -3.02215 2.79438 2.98653 3.46164 3.51016 3.53251 3.86361 4.38055 4.54174 4.56447 4.60401 4.64430 4.82493 4.83300 4.98159 5.03920 5.10385 5.16989 5.23364 5.32496 5.40213 5.42515 5.44861 5.49678 5.56096 5.59417 5.60427 5.65151 5.74157 5.75543 5.83415 5.88237 5.98274 6.01946 6.07826 6.16821 6.22587 6.34678 6.42863 6.50361 6.71368 6.78847 6.85988 6.87568 7.71165 7.72613 8.39965 8.45244 9.56497 10.13688 10.47995 11.49788 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.003370 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.975066 B = 8306.046694 C = 9164.307905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.157 4.157 3 C 0.072 3.928 4 H 0.098 0.902 5 C 0.531 3.469 6 O -0.518 6.518 7 N -0.621 5.621 8 C 0.118 3.882 9 C -0.100 4.100 10 H 0.084 0.916 11 C 0.166 3.834 12 N -0.733 5.733 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.931 5.931 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.099 4.099 22 H 0.087 0.913 23 C -0.139 4.139 24 C 0.103 3.897 25 N -0.522 5.522 26 C 0.019 3.981 27 C 0.010 3.990 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.975 2.215 0.748 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.196 4.196 3 C -0.040 4.040 4 H 0.116 0.884 5 C 0.318 3.682 6 O -0.392 6.392 7 N -0.356 5.356 8 C -0.004 4.004 9 C -0.120 4.120 10 H 0.102 0.898 11 C 0.038 3.962 12 N -0.377 5.377 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.118 4.118 22 H 0.105 0.895 23 C -0.197 4.197 24 C -0.020 4.020 25 N -0.245 5.245 26 C -0.129 4.129 27 C -0.138 4.138 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -24.148 2.850 0.147 24.316 hybrid contribution 0.397 -0.636 0.256 0.792 sum -23.751 2.215 0.403 23.858 Atomic orbital electron populations 1.22039 0.95017 1.02166 1.01992 1.22225 0.96703 0.96454 1.04222 1.21658 0.93129 0.95086 0.94107 0.88397 1.20082 0.89828 0.77034 0.81268 1.90709 1.63063 1.46421 1.39036 1.48569 1.08417 1.69076 1.09562 1.22277 0.79770 0.99728 0.98578 1.22655 0.95085 0.99504 0.94719 0.89781 1.20574 0.85162 0.97239 0.93227 1.42359 1.01002 1.78359 1.15978 1.19202 0.83373 1.36310 0.98355 0.91193 1.24748 0.97905 1.01970 0.96280 1.69657 1.29901 1.49819 1.08591 0.86197 0.84798 0.77613 0.77614 1.21768 1.21771 1.20768 1.22225 0.94516 0.99438 0.95630 0.89491 1.21740 1.00973 0.97278 0.99701 1.22204 0.95092 1.00003 0.84710 1.61746 1.26642 1.33844 1.02278 1.22564 1.02615 0.94488 0.93198 1.22751 0.88961 0.99336 1.02747 0.92288 0.91990 0.92187 0.90180 0.90421 0.90038 0.91200 0.96142 0.95857 0.78212 0.93481 0.92495 0.91645 0.92733 0.91855 0.91410 0.94852 0.91555 0.90379 0.91569 0.91288 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 8.13 37.16 0.30 -0.74 16 2 C -0.16 -1.43 4.79 -26.73 -0.13 -1.56 16 3 C 0.07 0.81 1.71 -68.86 -0.12 0.69 16 4 H 0.10 0.94 7.52 -51.93 -0.39 0.55 16 5 C 0.53 8.24 7.05 -10.98 -0.08 8.16 16 6 O -0.52 -10.38 15.64 5.56 0.09 -10.29 16 7 N -0.62 -8.95 3.33 -170.52 -0.57 -9.52 16 8 C 0.12 2.03 6.06 -2.53 -0.02 2.01 16 9 C -0.10 -1.56 2.55 -88.47 -0.23 -1.79 16 10 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 11 C 0.17 3.23 5.71 -4.04 -0.02 3.21 16 12 N -0.73 -18.55 5.45 -59.91 -0.33 -18.88 16 13 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 17 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.10 -1.13 3.02 -88.79 -0.27 -1.40 16 22 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 23 C -0.14 -1.34 9.13 37.16 0.34 -1.00 16 24 C 0.10 1.10 5.75 -3.06 -0.02 1.08 16 25 N -0.52 -6.06 4.49 -244.57 -1.10 -7.15 16 26 C 0.02 0.21 8.07 60.07 0.48 0.69 16 27 C 0.01 0.08 9.17 60.07 0.55 0.63 16 28 H 0.06 0.35 7.75 -51.93 -0.40 -0.05 16 29 H 0.06 0.42 4.99 -51.93 -0.26 0.16 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.82 5.99 -51.93 -0.31 0.51 16 32 H 0.08 0.69 5.73 -51.93 -0.30 0.40 16 33 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 34 H 0.07 1.28 8.01 -51.93 -0.42 0.87 16 35 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.38 10.34 7.53 -40.82 -0.31 10.03 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 39 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.61 5.67 -51.93 -0.29 0.32 16 44 H 0.03 0.30 4.83 -51.93 -0.25 0.05 16 45 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 46 H 0.08 1.06 7.08 -51.93 -0.37 0.69 16 47 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 48 H 0.07 0.52 8.05 -51.93 -0.42 0.11 16 49 H 0.04 0.29 4.29 -51.93 -0.22 0.06 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -33.61 370.34 -8.60 -42.21 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.54 Total: 5.78 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 0.56 Total: 2.57 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -1.27 Total: -63.50 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.61 -8.60 -42.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106674501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.377 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds