Wall clock time and date at job start Fri Apr 10 2020 17:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46957 * 2 1 4 4 H 1.08996 * 109.46797 * 53.43275 * 3 2 1 5 5 C 1.50703 * 109.46925 * 173.43671 * 3 2 1 6 6 O 1.21273 * 120.00140 * 109.02252 * 5 3 2 7 7 N 1.34775 * 119.99767 * 289.01548 * 5 3 2 8 8 C 1.47425 * 125.64688 * 175.77993 * 7 5 3 9 9 C 1.54908 * 104.83141 * 204.16222 * 8 7 5 10 10 H 1.09004 * 111.00197 * 81.06497 * 9 8 7 11 11 C 1.53001 * 111.00570 * 204.87601 * 9 8 7 12 12 N 1.46498 * 109.47334 * 293.54887 * 11 9 8 13 13 C 1.36932 * 120.00104 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00002 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99955 * 180.02562 * 13 12 11 16 16 N 1.31608 * 120.00054 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99843 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46888 * 89.99791 * 17 15 13 19 19 H 1.48499 * 109.46883 * 209.99835 * 17 15 13 20 20 H 1.48497 * 109.47089 * 330.00120 * 17 15 13 21 21 C 1.55158 * 101.58566 * 322.99115 * 9 8 7 22 22 H 1.09001 * 110.71703 * 277.14227 * 21 9 8 23 23 C 1.52995 * 110.72092 * 153.86298 * 21 9 8 24 24 C 1.47027 * 125.65019 * 355.82226 * 7 5 3 25 25 N 1.46897 * 109.47169 * 293.43500 * 3 2 1 26 26 C 1.46905 * 111.00233 * 323.28863 * 25 3 2 27 27 C 1.46903 * 110.99823 * 87.24063 * 25 3 2 28 28 H 1.08993 * 109.47147 * 313.38883 * 1 2 3 29 29 H 1.09003 * 109.47223 * 73.38656 * 1 2 3 30 30 H 1.08997 * 109.46965 * 193.38705 * 1 2 3 31 31 H 1.09001 * 109.47474 * 240.00584 * 2 1 3 32 32 H 1.08994 * 109.47493 * 119.99626 * 2 1 3 33 33 H 1.08994 * 110.36579 * 323.00719 * 8 7 5 34 34 H 1.08998 * 110.36583 * 85.21838 * 8 7 5 35 35 H 1.09001 * 109.46870 * 53.54733 * 11 9 8 36 36 H 1.08997 * 109.47091 * 173.54493 * 11 9 8 37 37 H 0.97001 * 119.99734 * 0.02562 * 12 11 9 38 38 H 0.97003 * 120.00337 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.47174 * 305.02253 * 23 21 9 40 40 H 1.09004 * 109.47047 * 65.02536 * 23 21 9 41 41 H 1.09000 * 109.46928 * 185.02694 * 23 21 9 42 42 H 1.09005 * 109.87718 * 298.32023 * 24 7 5 43 43 H 1.08998 * 109.87910 * 59.48730 * 24 7 5 44 44 H 1.09005 * 109.46936 * 59.99640 * 26 25 3 45 45 H 1.08992 * 109.47402 * 180.02562 * 26 25 3 46 46 H 1.09002 * 109.46817 * 300.00259 * 26 25 3 47 47 H 1.08998 * 109.46996 * 64.21739 * 27 25 3 48 48 H 1.09005 * 109.46994 * 184.21618 * 27 25 3 49 49 H 1.08999 * 109.47107 * 304.21068 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5838 1.9891 0.8254 5 6 3.5382 1.4457 0.1624 6 8 4.2488 1.7512 -0.7717 7 7 4.0884 1.1091 1.3458 8 6 5.5320 0.9852 1.6179 9 6 5.6263 0.0226 2.8279 10 1 5.5436 -1.0162 2.5081 11 6 6.9210 0.2508 3.6107 12 7 8.0667 -0.1316 2.7818 13 6 9.3386 -0.0128 3.2750 14 1 9.4971 0.3625 4.2752 15 6 10.4243 -0.3747 2.4893 16 7 10.2313 -0.8315 1.2703 17 14 12.1594 -0.2132 3.1625 18 1 12.5463 -1.4759 3.8416 19 1 13.1004 0.0568 2.0458 20 1 12.2107 0.9077 4.1351 21 6 4.3889 0.4481 3.6617 22 1 4.6188 1.3184 4.2763 23 6 3.8944 -0.7125 4.5273 24 6 3.3483 0.8037 2.5790 25 7 1.6839 2.0878 -1.2707 26 6 1.7825 1.1397 -2.3885 27 6 0.3422 2.6822 -1.2015 28 1 -0.3633 0.7059 0.7468 29 1 -0.3634 0.2938 -0.9848 30 1 -0.3633 -0.9997 0.2379 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 6.0457 0.5615 0.7550 34 1 5.9552 1.9574 1.8706 35 1 7.0023 1.3041 3.8792 36 1 6.9094 -0.3552 4.5166 37 1 7.9244 -0.4683 1.8833 38 1 10.9900 -1.0840 0.7211 39 1 3.7013 -1.5800 3.8961 40 1 4.6544 -0.9635 5.2672 41 1 2.9750 -0.4210 5.0351 42 1 2.7720 1.6749 2.8907 43 1 2.6829 -0.0432 2.4118 44 1 1.1027 0.3048 -2.2178 45 1 1.5140 1.6434 -3.3170 46 1 2.8045 0.7673 -2.4599 47 1 0.3373 3.4827 -0.4617 48 1 0.0736 3.0874 -2.1771 49 1 -0.3795 1.9176 -0.9144 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106674501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:17 Heat of formation + Delta-G solvation = -33.057588 kcal Electronic energy + Delta-G solvation = -25487.456134 eV Core-core repulsion = 22063.225004 eV Total energy + Delta-G solvation = -3424.231130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57560 -39.75204 -38.24237 -36.46818 -34.34848 -33.17272 -33.03553 -30.90107 -29.32389 -28.64180 -27.22081 -26.92051 -24.97573 -23.82815 -22.81899 -21.81158 -21.19010 -20.14230 -19.12970 -18.12826 -17.57901 -17.00388 -16.60303 -16.55714 -16.01150 -15.51386 -15.42997 -15.26167 -15.06956 -14.90644 -14.30413 -14.15312 -13.75772 -13.67457 -13.39550 -13.36358 -13.23798 -13.04586 -12.96384 -12.83773 -12.73592 -12.72300 -12.55413 -12.43140 -12.16963 -12.11729 -11.95755 -11.84544 -11.74593 -11.51485 -11.35247 -10.95088 -10.72421 -9.65334 -9.11253 -9.01221 -7.95464 -5.25042 1.45932 1.48503 1.56896 1.62542 1.88223 2.55243 3.04172 3.35089 3.39132 3.53145 3.71473 3.76871 3.84483 3.93360 4.18062 4.19673 4.30214 4.32913 4.37244 4.42762 4.47679 4.53070 4.54368 4.60420 4.66663 4.74827 4.80131 4.82540 4.86114 4.88807 5.00592 5.01158 5.05438 5.08644 5.14879 5.17315 5.21346 5.28098 5.36362 5.39114 5.48402 5.54336 5.95021 6.13176 6.25884 6.58588 7.21025 7.31869 8.08070 8.29910 9.28261 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.003370 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.975066 B = 8306.046694 C = 9164.307905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C 0.083 3.917 4 H 0.124 0.876 5 C 0.520 3.480 6 O -0.578 6.578 7 N -0.619 5.619 8 C 0.123 3.877 9 C -0.090 4.090 10 H 0.076 0.924 11 C 0.165 3.835 12 N -0.748 5.748 13 C -0.244 4.244 14 H 0.079 0.921 15 C -0.079 4.079 16 N -0.972 5.972 17 Si 0.976 3.024 18 H -0.284 1.284 19 H -0.298 1.298 20 H -0.267 1.267 21 C -0.087 4.087 22 H 0.094 0.906 23 C -0.135 4.135 24 C 0.101 3.899 25 N -0.551 5.551 26 C 0.025 3.975 27 C 0.011 3.989 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.035 0.965 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.097 2.395 3.173 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C -0.029 4.029 4 H 0.141 0.859 5 C 0.309 3.691 6 O -0.457 6.457 7 N -0.353 5.353 8 C -0.001 4.001 9 C -0.109 4.109 10 H 0.094 0.906 11 C 0.039 3.961 12 N -0.391 5.391 13 C -0.376 4.376 14 H 0.097 0.903 15 C -0.271 4.271 16 N -0.623 5.623 17 Si 0.804 3.196 18 H -0.211 1.211 19 H -0.225 1.225 20 H -0.192 1.192 21 C -0.106 4.106 22 H 0.113 0.887 23 C -0.193 4.193 24 C -0.020 4.020 25 N -0.275 5.275 26 C -0.123 4.123 27 C -0.136 4.136 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.202 0.798 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.334 3.039 2.650 27.629 hybrid contribution 1.342 -0.650 -0.483 1.567 sum -25.992 2.389 2.166 26.191 Atomic orbital electron populations 1.21997 0.92502 1.03410 1.02634 1.22190 0.98678 0.94603 1.03638 1.21648 0.89407 0.96921 0.94900 0.85854 1.21151 0.91822 0.75631 0.80512 1.90677 1.64801 1.49148 1.41031 1.48659 1.07315 1.68398 1.10918 1.21969 0.81741 0.98792 0.97571 1.22475 0.95473 0.98549 0.94443 0.90560 1.20744 0.85051 0.97051 0.93274 1.42625 1.01995 1.78366 1.16067 1.19665 0.84666 1.34742 0.98539 0.90265 1.25628 1.02102 1.02674 0.96701 1.69838 1.30612 1.51750 1.10093 0.85108 0.79588 0.78022 0.76858 1.21118 1.22508 1.19210 1.22232 0.92206 1.00548 0.95663 0.88724 1.21731 1.02052 0.96288 0.99203 1.22509 0.94791 1.02386 0.82345 1.61648 1.29047 1.34406 1.02418 1.22455 1.00814 0.95277 0.93738 1.22811 0.87474 0.99861 1.03416 0.90635 0.91901 0.91074 0.91985 0.89918 0.94468 0.93024 0.96011 0.94712 0.79760 0.94111 0.92389 0.92474 0.89573 0.88781 0.88854 0.92806 0.90813 0.94108 0.90949 0.90851 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.13 71.98 0.59 -0.83 16 2 C -0.15 -2.43 4.79 30.60 0.15 -2.28 16 3 C 0.08 1.73 1.71 44.17 0.08 1.80 16 4 H 0.12 1.91 7.52 -2.39 -0.02 1.89 16 5 C 0.52 16.41 7.05 87.66 0.62 17.03 16 6 O -0.58 -24.79 15.64 -3.01 -0.05 -24.84 16 7 N -0.62 -17.76 3.33 -811.79 -2.70 -20.46 16 8 C 0.12 4.44 6.06 86.85 0.53 4.97 16 9 C -0.09 -2.82 2.55 -9.40 -0.02 -2.84 16 10 H 0.08 2.53 8.04 -2.38 -0.02 2.51 16 11 C 0.17 6.47 5.71 86.38 0.49 6.96 16 12 N -0.75 -39.07 5.45 -343.46 -1.87 -40.95 16 13 C -0.24 -13.96 9.99 84.04 0.84 -13.12 16 14 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 15 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 16 N -0.97 -62.03 13.06 21.65 0.28 -61.75 16 17 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.09 -1.77 3.02 -9.61 -0.03 -1.80 16 22 H 0.09 1.83 8.04 -2.39 -0.02 1.82 16 23 C -0.14 -2.11 9.13 71.98 0.66 -1.45 16 24 C 0.10 1.83 5.75 86.73 0.50 2.33 16 25 N -0.55 -12.24 4.49 -927.69 -4.16 -16.40 16 26 C 0.02 0.54 8.07 127.69 1.03 1.58 16 27 C 0.01 0.15 9.17 127.69 1.17 1.33 16 28 H 0.07 0.51 7.75 -2.39 -0.02 0.49 16 29 H 0.06 0.60 4.99 -2.39 -0.01 0.59 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 1.22 5.99 -2.39 -0.01 1.21 16 32 H 0.08 1.22 5.73 -2.39 -0.01 1.21 16 33 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 34 H 0.05 2.02 8.01 -2.39 -0.02 2.00 16 35 H 0.02 0.86 8.10 -2.39 -0.02 0.84 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.37 21.08 7.53 -92.71 -0.70 20.38 16 38 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.09 1.28 5.67 -2.39 -0.01 1.26 16 44 H 0.05 0.92 4.83 -2.38 -0.01 0.91 16 45 H 0.07 1.43 8.07 -2.39 -0.02 1.42 16 46 H 0.04 1.18 7.08 -2.39 -0.02 1.17 16 47 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 48 H 0.07 0.95 8.05 -2.38 -0.02 0.93 16 49 H 0.06 0.61 4.29 -2.39 -0.01 0.60 16 Total: -1.00 -78.05 370.34 0.81 -77.23 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.23 Total: 28.33 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 7.06 Total: 9.45 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -8.45 Total: -139.56 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -78.05 0.81 -77.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106674501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.175 kcal (2) G-P(sol) polarization free energy of solvation -78.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds