Wall clock time and date at job start Fri Apr 10 2020 17:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47266 * 2 1 4 4 N 1.46897 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.46910 * 110.99865 * 66.04526 * 4 3 2 6 6 C 1.46893 * 110.99982 * 189.99894 * 4 3 2 7 7 C 1.50699 * 109.47190 * 170.00437 * 6 4 3 8 8 O 1.21288 * 119.99980 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00343 * 180.02562 * 7 6 4 10 10 C 1.47486 * 127.03579 * 179.97438 * 9 7 6 11 11 C 1.54003 * 107.08454 * 154.29172 * 10 9 7 12 12 H 1.08993 * 110.32784 * 120.19822 * 11 10 9 13 13 C 1.53001 * 110.32182 * 242.31216 * 11 10 9 14 14 N 1.46494 * 109.47490 * 293.54027 * 13 11 10 15 15 C 1.36927 * 120.00432 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99996 * 0.02562 * 15 14 13 17 17 C 1.38818 * 120.00484 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99630 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00154 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47132 * 60.00419 * 19 17 15 21 21 H 1.48504 * 109.46876 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47160 * 299.99819 * 19 17 15 23 23 C 1.54620 * 105.03961 * 1.30302 * 11 10 9 24 24 H 1.09004 * 110.73930 * 263.50537 * 23 11 10 25 25 C 1.53007 * 110.73501 * 140.37131 * 23 11 10 26 26 C 1.48113 * 127.02791 * 359.68155 * 9 7 6 27 27 H 1.08994 * 109.46934 * 300.00138 * 1 2 3 28 28 H 1.09004 * 109.46451 * 60.00042 * 1 2 3 29 29 H 1.08998 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47388 * 239.99391 * 2 1 3 31 31 H 1.09008 * 109.46917 * 119.99881 * 2 1 3 32 32 H 1.08995 * 109.47014 * 59.99573 * 3 2 1 33 33 H 1.08996 * 109.46682 * 299.99903 * 3 2 1 34 34 H 1.09001 * 109.46898 * 183.95296 * 5 4 3 35 35 H 1.09000 * 109.46697 * 303.95467 * 5 4 3 36 36 H 1.09000 * 109.47051 * 63.95035 * 5 4 3 37 37 H 1.09001 * 109.47461 * 50.00281 * 6 4 3 38 38 H 1.09008 * 109.47221 * 289.99900 * 6 4 3 39 39 H 1.08999 * 109.91088 * 273.65318 * 10 9 7 40 40 H 1.09002 * 109.90796 * 34.73635 * 10 9 7 41 41 H 1.08998 * 109.47318 * 53.54622 * 13 11 10 42 42 H 1.09010 * 109.46802 * 173.54224 * 13 11 10 43 43 H 0.97000 * 119.99385 * 0.02562 * 14 13 11 44 44 H 0.96995 * 120.00053 * 179.97438 * 18 17 15 45 45 H 1.09006 * 109.46934 * 59.99837 * 25 23 11 46 46 H 1.08998 * 109.47022 * 179.97438 * 25 23 11 47 47 H 1.08993 * 109.46865 * 300.00321 * 25 23 11 48 48 H 1.08997 * 110.66402 * 337.99428 * 26 9 7 49 49 H 1.08998 * 110.66769 * 101.11840 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0360 0.8855 -1.2525 6 6 4.0354 2.7931 0.2388 7 6 5.5216 2.7183 0.4766 8 8 6.0867 1.6454 0.4508 9 7 6.2228 3.8435 0.7191 10 6 7.6719 3.9501 0.9717 11 6 8.1016 5.3678 0.5505 12 1 8.5276 5.9022 1.3995 13 6 9.1138 5.2980 -0.5947 14 7 10.3551 4.6873 -0.1129 15 6 11.4122 4.5198 -0.9669 16 1 11.3311 4.8384 -1.9957 17 6 12.5884 3.9406 -0.5104 18 7 12.6871 3.5520 0.7433 19 14 14.0307 3.7128 -1.6753 20 1 14.4607 5.0356 -2.1954 21 1 15.1587 3.0771 -0.9481 22 1 13.6198 2.8452 -2.8082 23 6 6.8006 6.0579 0.0792 24 1 6.7015 5.9957 -1.0045 25 6 6.7626 7.5158 0.5419 26 6 5.6965 5.2267 0.7804 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 5.1233 0.8322 -1.1975 35 1 3.6304 -0.1148 -1.4043 36 1 3.7452 1.5257 -2.0853 37 1 3.5486 3.2237 1.1138 38 1 3.8378 3.4188 -0.6317 39 1 7.8760 3.7999 2.0318 40 1 8.2072 3.2061 0.3817 41 1 8.7038 4.6964 -1.4059 42 1 9.3212 6.3047 -0.9580 43 1 10.4281 4.4016 0.8112 44 1 13.5087 3.1469 1.0622 45 1 7.6158 8.0515 0.1257 46 1 5.8389 7.9818 0.1988 47 1 6.8062 7.5528 1.6303 48 1 4.7541 5.3040 0.2382 49 1 5.5734 5.5459 1.8153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106906132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:25 Heat of formation + Delta-G solvation = -22.321258 kcal Electronic energy + Delta-G solvation = -24713.002522 eV Core-core repulsion = 21289.236955 eV Total energy + Delta-G solvation = -3423.765567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.13675 -38.44612 -37.02853 -34.60515 -33.40188 -32.80918 -31.39853 -29.55652 -28.13826 -27.17322 -26.29723 -25.34109 -23.54000 -22.83823 -21.13145 -20.97428 -19.78160 -19.08514 -17.29689 -16.85572 -16.24970 -15.90471 -15.66215 -15.19934 -14.81100 -14.55450 -14.26520 -13.94579 -13.82882 -13.53572 -13.26636 -13.03971 -12.81676 -12.77976 -12.50411 -12.33045 -12.08190 -11.90844 -11.88397 -11.75764 -11.54645 -11.34556 -11.31356 -11.06368 -10.84459 -10.81236 -10.59146 -10.48534 -10.30780 -9.98115 -9.64568 -9.58026 -8.84617 -8.54003 -8.43128 -6.89610 -5.72819 -3.01787 2.77515 2.93026 3.47025 3.51158 3.52383 3.78872 4.45285 4.53438 4.61405 4.64055 4.75393 4.83188 4.93897 5.02118 5.06344 5.13157 5.20557 5.26320 5.34395 5.37849 5.41514 5.48774 5.50648 5.52807 5.54127 5.61831 5.73253 5.73859 5.79321 5.87508 5.97118 6.01874 6.09539 6.14130 6.17799 6.21818 6.31616 6.45284 6.50891 6.73862 6.76162 6.88129 6.89392 7.70546 7.72376 8.36005 8.45764 9.56817 10.13833 10.48443 11.49957 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.003066 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.237422 B = 9131.485090 C =10260.564066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.056 3.944 4 N -0.526 5.526 5 C 0.015 3.985 6 C 0.043 3.957 7 C 0.529 3.471 8 O -0.518 6.518 9 N -0.623 5.623 10 C 0.113 3.887 11 C -0.102 4.102 12 H 0.086 0.914 13 C 0.163 3.837 14 N -0.732 5.732 15 C -0.241 4.241 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.100 4.100 24 H 0.083 0.917 25 C -0.140 4.140 26 C 0.103 3.897 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.019 0.981 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.018 0.982 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.303 2.668 -0.057 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.250 5.250 5 C -0.132 4.132 6 C -0.088 4.088 7 C 0.316 3.684 8 O -0.393 6.393 9 N -0.358 5.358 10 C -0.009 4.009 11 C -0.122 4.122 12 H 0.104 0.896 13 C 0.036 3.964 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.120 4.120 24 H 0.101 0.899 25 C -0.197 4.197 26 C -0.020 4.020 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.778 1.660 0.158 24.834 hybrid contribution 0.621 0.403 -0.952 1.206 sum -24.157 2.063 -0.795 24.258 Atomic orbital electron populations 1.21737 0.95627 1.01801 1.01665 1.21546 0.95192 0.96233 1.03059 1.22199 0.86719 0.97649 1.00649 1.61638 1.07003 1.19892 1.36491 1.22632 1.03255 0.99314 0.88031 1.21929 0.93160 0.91376 1.02360 1.20053 0.88588 0.82764 0.76985 1.90711 1.71114 1.27455 1.50056 1.48862 1.09823 1.06223 1.70883 1.22145 0.79424 0.98308 1.01020 1.22380 0.95101 0.94472 1.00232 0.89565 1.20686 0.86524 0.96030 0.93207 1.42350 1.10359 1.73149 1.11776 1.19155 0.91733 1.33414 0.92874 0.91323 1.24743 0.98215 1.01607 0.96349 1.69646 1.27285 1.46991 1.14179 0.86265 0.82296 0.77702 0.79903 1.21312 1.21674 1.21277 1.22291 0.94310 0.94756 1.00630 0.89872 1.21731 1.01925 0.94710 1.01355 1.22636 0.97253 0.81446 1.00672 0.92677 0.92936 0.92497 0.91784 0.90929 0.90829 0.94918 0.89085 0.91161 0.96214 0.88177 0.92150 0.91887 0.89189 0.96390 0.96109 0.78232 0.93442 0.91766 0.92745 0.92392 0.90736 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -1.00 5.86 -26.73 -0.16 -1.15 16 3 C 0.06 0.49 4.96 -3.82 -0.02 0.47 16 4 N -0.53 -6.22 4.50 -244.37 -1.10 -7.32 16 5 C 0.02 0.19 9.01 60.07 0.54 0.73 16 6 C 0.04 0.48 4.38 -4.98 -0.02 0.45 16 7 C 0.53 8.12 7.62 -10.98 -0.08 8.03 16 8 O -0.52 -10.28 14.64 5.55 0.08 -10.20 16 9 N -0.62 -8.91 3.29 -169.75 -0.56 -9.46 16 10 C 0.11 1.92 6.30 -2.98 -0.02 1.90 16 11 C -0.10 -1.59 2.64 -89.24 -0.24 -1.83 16 12 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 13 C 0.16 3.27 5.35 -4.04 -0.02 3.24 16 14 N -0.73 -18.70 5.33 -59.91 -0.32 -19.02 16 15 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 16 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 19 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.10 -1.15 3.20 -88.72 -0.28 -1.44 16 24 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 25 C -0.14 -1.32 9.17 37.16 0.34 -0.97 16 26 C 0.10 1.06 6.40 -2.11 -0.01 1.05 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.54 6.47 -51.93 -0.34 0.20 16 31 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.07 0.57 7.93 -51.93 -0.41 0.16 16 33 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 35 H 0.07 0.76 6.30 -51.93 -0.33 0.43 16 36 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.10 0.90 7.93 -51.93 -0.41 0.48 16 38 H 0.06 0.58 7.88 -51.92 -0.41 0.17 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.90 7.49 -51.93 -0.39 1.51 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 43 H 0.38 10.29 7.51 -40.82 -0.31 9.98 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 48 H 0.07 0.58 7.23 -51.93 -0.38 0.21 16 49 H 0.07 0.67 8.03 -51.93 -0.42 0.25 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -33.65 384.16 -9.38 -43.03 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -9.12 Total: 4.92 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 0.15 Total: 2.41 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -1.25 Total: -63.81 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.65 -9.38 -43.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106906132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.709 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds