Wall clock time and date at job start Fri Apr 10 2020 17:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47266 * 2 1 4 4 N 1.46897 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.46910 * 110.99865 * 66.04526 * 4 3 2 6 6 C 1.46893 * 110.99982 * 189.99894 * 4 3 2 7 7 C 1.50699 * 109.47190 * 170.00437 * 6 4 3 8 8 O 1.21288 * 119.99980 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00343 * 180.02562 * 7 6 4 10 10 C 1.47486 * 127.03579 * 179.97438 * 9 7 6 11 11 C 1.54003 * 107.08454 * 154.29172 * 10 9 7 12 12 H 1.08993 * 110.32784 * 120.19822 * 11 10 9 13 13 C 1.53001 * 110.32182 * 242.31216 * 11 10 9 14 14 N 1.46494 * 109.47490 * 293.54027 * 13 11 10 15 15 C 1.36927 * 120.00432 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99996 * 0.02562 * 15 14 13 17 17 C 1.38818 * 120.00484 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99630 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00154 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47132 * 60.00419 * 19 17 15 21 21 H 1.48504 * 109.46876 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47160 * 299.99819 * 19 17 15 23 23 C 1.54620 * 105.03961 * 1.30302 * 11 10 9 24 24 H 1.09004 * 110.73930 * 263.50537 * 23 11 10 25 25 C 1.53007 * 110.73501 * 140.37131 * 23 11 10 26 26 C 1.48113 * 127.02791 * 359.68155 * 9 7 6 27 27 H 1.08994 * 109.46934 * 300.00138 * 1 2 3 28 28 H 1.09004 * 109.46451 * 60.00042 * 1 2 3 29 29 H 1.08998 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47388 * 239.99391 * 2 1 3 31 31 H 1.09008 * 109.46917 * 119.99881 * 2 1 3 32 32 H 1.08995 * 109.47014 * 59.99573 * 3 2 1 33 33 H 1.08996 * 109.46682 * 299.99903 * 3 2 1 34 34 H 1.09001 * 109.46898 * 183.95296 * 5 4 3 35 35 H 1.09000 * 109.46697 * 303.95467 * 5 4 3 36 36 H 1.09000 * 109.47051 * 63.95035 * 5 4 3 37 37 H 1.09001 * 109.47461 * 50.00281 * 6 4 3 38 38 H 1.09008 * 109.47221 * 289.99900 * 6 4 3 39 39 H 1.08999 * 109.91088 * 273.65318 * 10 9 7 40 40 H 1.09002 * 109.90796 * 34.73635 * 10 9 7 41 41 H 1.08998 * 109.47318 * 53.54622 * 13 11 10 42 42 H 1.09010 * 109.46802 * 173.54224 * 13 11 10 43 43 H 0.97000 * 119.99385 * 0.02562 * 14 13 11 44 44 H 0.96995 * 120.00053 * 179.97438 * 18 17 15 45 45 H 1.09006 * 109.46934 * 59.99837 * 25 23 11 46 46 H 1.08998 * 109.47022 * 179.97438 * 25 23 11 47 47 H 1.08993 * 109.46865 * 300.00321 * 25 23 11 48 48 H 1.08997 * 110.66402 * 337.99428 * 26 9 7 49 49 H 1.08998 * 110.66769 * 101.11840 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0360 0.8855 -1.2525 6 6 4.0354 2.7931 0.2388 7 6 5.5216 2.7183 0.4766 8 8 6.0867 1.6454 0.4508 9 7 6.2228 3.8435 0.7191 10 6 7.6719 3.9501 0.9717 11 6 8.1016 5.3678 0.5505 12 1 8.5276 5.9022 1.3995 13 6 9.1138 5.2980 -0.5947 14 7 10.3551 4.6873 -0.1129 15 6 11.4122 4.5198 -0.9669 16 1 11.3311 4.8384 -1.9957 17 6 12.5884 3.9406 -0.5104 18 7 12.6871 3.5520 0.7433 19 14 14.0307 3.7128 -1.6753 20 1 14.4607 5.0356 -2.1954 21 1 15.1587 3.0771 -0.9481 22 1 13.6198 2.8452 -2.8082 23 6 6.8006 6.0579 0.0792 24 1 6.7015 5.9957 -1.0045 25 6 6.7626 7.5158 0.5419 26 6 5.6965 5.2267 0.7804 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 5.1233 0.8322 -1.1975 35 1 3.6304 -0.1148 -1.4043 36 1 3.7452 1.5257 -2.0853 37 1 3.5486 3.2237 1.1138 38 1 3.8378 3.4188 -0.6317 39 1 7.8760 3.7999 2.0318 40 1 8.2072 3.2061 0.3817 41 1 8.7038 4.6964 -1.4059 42 1 9.3212 6.3047 -0.9580 43 1 10.4281 4.4016 0.8112 44 1 13.5087 3.1469 1.0622 45 1 7.6158 8.0515 0.1257 46 1 5.8389 7.9818 0.1988 47 1 6.8062 7.5528 1.6303 48 1 4.7541 5.3040 0.2382 49 1 5.5734 5.5459 1.8153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106906132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:24 Heat of formation + Delta-G solvation = -45.869800 kcal Electronic energy + Delta-G solvation = -24714.023663 eV Core-core repulsion = 21289.236955 eV Total energy + Delta-G solvation = -3424.786709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.28207 -39.51960 -38.04282 -36.45143 -34.24476 -34.01203 -33.06976 -30.97426 -29.33498 -27.94557 -27.16878 -26.89317 -25.13526 -23.93711 -22.44524 -21.67192 -20.98917 -20.22590 -19.18984 -18.10782 -17.33073 -16.86057 -16.69418 -16.52051 -16.22357 -15.73562 -15.32319 -15.25370 -15.14993 -14.93250 -14.64271 -14.05507 -13.93832 -13.78475 -13.61870 -13.24275 -13.10926 -12.98668 -12.86397 -12.79174 -12.74275 -12.66654 -12.51518 -12.35461 -12.20591 -11.96103 -11.95620 -11.82794 -11.49626 -11.44877 -11.37027 -10.96956 -10.78341 -9.70466 -9.30180 -9.03509 -7.97751 -5.27027 1.43617 1.47675 1.53650 1.62753 1.86451 2.53387 2.95720 3.34867 3.43266 3.55109 3.75498 3.82640 3.96538 4.13160 4.18431 4.24036 4.25679 4.28354 4.46210 4.46635 4.50602 4.54444 4.56168 4.58445 4.66887 4.69903 4.79171 4.83568 4.87742 4.90902 4.94096 5.01867 5.08340 5.14102 5.22545 5.24639 5.28124 5.30806 5.39084 5.44017 5.45035 5.58408 5.91576 6.10506 6.24217 6.60895 7.20519 7.30211 8.05918 8.28862 9.25658 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.003066 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.237422 B = 9131.485090 C =10260.564066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.550 5.550 5 C 0.022 3.978 6 C 0.053 3.947 7 C 0.518 3.482 8 O -0.578 6.578 9 N -0.622 5.622 10 C 0.118 3.882 11 C -0.092 4.092 12 H 0.089 0.911 13 C 0.164 3.836 14 N -0.745 5.745 15 C -0.249 4.249 16 H 0.074 0.926 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.975 3.025 20 H -0.273 1.273 21 H -0.294 1.294 22 H -0.281 1.281 23 C -0.091 4.091 24 H 0.081 0.919 25 C -0.134 4.134 26 C 0.105 3.895 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.005 0.995 42 H 0.030 0.970 43 H 0.374 0.626 44 H 0.252 0.748 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.113 0.887 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.245 4.853 -0.599 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.068 4.068 4 N -0.275 5.275 5 C -0.126 4.126 6 C -0.077 4.077 7 C 0.308 3.692 8 O -0.457 6.457 9 N -0.356 5.356 10 C -0.006 4.006 11 C -0.112 4.112 12 H 0.107 0.893 13 C 0.038 3.962 14 N -0.388 5.388 15 C -0.380 4.380 16 H 0.092 0.908 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.803 3.197 20 H -0.199 1.199 21 H -0.220 1.220 22 H -0.207 1.207 23 C -0.111 4.111 24 H 0.099 0.901 25 C -0.192 4.192 26 C -0.016 4.016 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.149 0.851 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.048 0.952 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.131 0.869 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -27.779 3.908 -0.410 28.055 hybrid contribution 1.498 -0.288 -0.798 1.722 sum -26.281 3.620 -1.208 26.556 Atomic orbital electron populations 1.21694 0.93982 1.02237 1.02385 1.21540 0.96563 0.95987 1.01968 1.22263 0.84523 0.98056 1.01994 1.61579 1.08997 1.20660 1.36270 1.22465 1.00787 1.00303 0.89053 1.21963 0.89481 0.91656 1.04645 1.21059 0.90494 0.81991 0.75698 1.90690 1.72604 1.29788 1.52572 1.48983 1.08490 1.08081 1.70094 1.21852 0.81410 0.97745 0.99580 1.22261 0.96139 0.94164 0.98623 0.89316 1.20819 0.85557 0.95275 0.94588 1.42577 1.11662 1.73477 1.11068 1.19586 0.92592 1.32416 0.93450 0.90817 1.25614 1.01138 1.02106 0.98030 1.69814 1.27741 1.48378 1.16050 0.85191 0.78662 0.78018 0.77779 1.19870 1.21992 1.20745 1.22290 0.91901 0.96172 1.00711 0.90072 1.21707 1.02946 0.92652 1.01862 1.22947 0.97969 0.78188 1.02513 0.91938 0.92160 0.92297 0.92519 0.92477 0.89265 0.93524 0.93034 0.90535 0.94833 0.85084 0.89591 0.92526 0.94449 0.97703 0.95199 0.79463 0.93952 0.92981 0.89814 0.91582 0.86855 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.82 5.86 30.60 0.18 -1.64 16 3 C 0.06 0.86 4.96 86.30 0.43 1.29 16 4 N -0.55 -12.22 4.50 -927.04 -4.17 -16.39 16 5 C 0.02 0.53 9.01 127.69 1.15 1.68 16 6 C 0.05 1.03 4.38 85.56 0.37 1.41 16 7 C 0.52 15.81 7.62 87.66 0.67 16.47 16 8 O -0.58 -24.24 14.64 -3.06 -0.04 -24.28 16 9 N -0.62 -17.33 3.29 -809.34 -2.66 -19.99 16 10 C 0.12 4.17 6.30 86.53 0.55 4.71 16 11 C -0.09 -2.87 2.64 -9.90 -0.03 -2.89 16 12 H 0.09 2.73 7.85 -2.39 -0.02 2.71 16 13 C 0.16 6.71 5.35 86.38 0.46 7.17 16 14 N -0.75 -39.50 5.33 -343.45 -1.83 -41.33 16 15 C -0.25 -14.50 9.99 84.04 0.84 -13.66 16 16 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 18 N -0.97 -61.62 13.06 21.65 0.28 -61.33 16 19 Si 0.98 47.83 29.55 68.60 2.03 49.86 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 23 C -0.09 -1.86 3.20 -9.57 -0.03 -1.89 16 24 H 0.08 1.73 7.87 -2.38 -0.02 1.71 16 25 C -0.13 -2.03 9.17 71.98 0.66 -1.37 16 26 C 0.11 1.76 6.40 86.74 0.56 2.32 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.91 6.47 -2.39 -0.02 0.89 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.05 7.93 -2.39 -0.02 1.03 16 33 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 34 H 0.05 1.67 5.88 -2.39 -0.01 1.66 16 35 H 0.08 1.68 6.30 -2.39 -0.02 1.66 16 36 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.13 1.75 7.93 -2.39 -0.02 1.73 16 38 H 0.09 1.27 7.88 -2.38 -0.02 1.25 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.04 1.70 7.49 -2.39 -0.02 1.69 16 41 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.37 21.04 7.51 -92.71 -0.70 20.34 16 44 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 48 H 0.11 1.12 7.23 -2.39 -0.02 1.10 16 49 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 Total: -1.00 -78.27 384.16 0.79 -77.48 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.20 Total: 27.29 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.99 Total: 8.69 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -8.38 Total: -139.04 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.04 Total: -24.28 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -78.27 0.79 -77.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106906132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.613 kcal (2) G-P(sol) polarization free energy of solvation -78.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds