Wall clock time and date at job start Fri Apr 10 2020 17:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00312 * 2 1 4 4 C 1.46896 * 110.99750 * 123.96064 * 2 1 3 5 5 C 1.53004 * 109.46863 * 169.99841 * 4 2 1 6 6 C 1.53008 * 109.47055 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47098 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00155 * 270.00294 * 7 6 5 9 9 C 1.50703 * 109.46831 * 265.08168 * 8 7 6 10 10 H 1.08005 * 119.99835 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99972 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00292 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99923 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47540 * 59.99440 * 13 11 9 15 15 H 1.48504 * 109.47199 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46876 * 299.99700 * 13 11 9 17 17 C 1.34771 * 119.99753 * 89.99785 * 7 6 5 18 18 O 1.21348 * 120.00506 * 354.55450 * 17 7 6 19 19 C 1.49448 * 119.99864 * 174.82735 * 17 7 6 20 20 O 1.21350 * 120.00299 * 354.01246 * 19 17 7 21 21 N 1.34782 * 120.00335 * 174.01183 * 19 17 7 22 22 C 1.46493 * 120.00234 * 179.97438 * 21 19 17 23 23 C 1.53000 * 117.50037 * 223.74599 * 22 21 19 24 24 C 1.53002 * 117.49806 * 155.08255 * 22 21 19 25 25 H 1.08999 * 109.46861 * 296.04848 * 1 2 3 26 26 H 1.09004 * 109.46901 * 56.03760 * 1 2 3 27 27 H 1.08997 * 109.47512 * 176.04212 * 1 2 3 28 28 H 1.08994 * 109.47364 * 183.95235 * 3 2 1 29 29 H 1.09000 * 109.47365 * 303.95857 * 3 2 1 30 30 H 1.09009 * 109.46960 * 63.95662 * 3 2 1 31 31 H 1.08999 * 109.47263 * 49.99872 * 4 2 1 32 32 H 1.08994 * 109.47064 * 289.99193 * 4 2 1 33 33 H 1.08999 * 109.47155 * 59.99965 * 5 4 2 34 34 H 1.09001 * 109.47365 * 299.99427 * 5 4 2 35 35 H 1.08999 * 109.46994 * 60.00078 * 6 5 4 36 36 H 1.09001 * 109.46739 * 300.00022 * 6 5 4 37 37 H 1.08998 * 109.47085 * 25.07659 * 8 7 6 38 38 H 1.08998 * 109.47454 * 145.08274 * 8 7 6 39 39 H 0.96999 * 120.00297 * 180.02562 * 12 11 9 40 40 H 0.97001 * 119.99436 * 0.02562 * 21 19 17 41 41 H 1.09003 * 115.54952 * 9.41542 * 22 21 19 42 42 H 1.09000 * 117.49747 * 0.02562 * 23 22 21 43 43 H 1.08993 * 117.50176 * 145.02156 * 23 22 21 44 44 H 1.08997 * 117.50160 * 214.97711 * 24 22 21 45 45 H 1.09002 * 117.50074 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9555 0.9702 6 6 4.0528 -1.7529 2.1553 7 7 5.4976 -1.9348 1.9948 8 6 6.0138 -3.1064 1.2827 9 6 6.3493 -4.1898 2.2752 10 1 6.1940 -4.0221 3.3307 11 6 6.8555 -5.3945 1.8357 12 7 7.0452 -5.5986 0.5503 13 14 7.2721 -6.7372 3.0659 14 1 6.0495 -7.1151 3.8191 15 1 7.7952 -7.9249 2.3442 16 1 8.3023 -6.2390 4.0123 17 6 6.3518 -1.0242 2.5022 18 8 5.9248 -0.0054 3.0045 19 6 7.8253 -1.2662 2.4407 20 8 8.2493 -2.3280 2.0339 21 7 8.6833 -0.3053 2.8370 22 6 10.1276 -0.5428 2.7772 23 6 10.9666 -0.1008 3.9779 24 6 11.0405 0.6797 2.6631 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3431 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7045 1.8723 0.9234 31 1 1.5089 -1.7408 1.1754 32 1 1.7976 -0.2249 2.0627 33 1 3.9909 0.0192 0.9322 34 1 3.7024 -1.4967 0.0450 35 1 3.5664 -2.7276 2.1936 36 1 3.8549 -1.2113 3.0803 37 1 5.2575 -3.4717 0.5880 38 1 6.9115 -2.8294 0.7300 39 1 7.4010 -6.4463 0.2411 40 1 8.3443 0.5433 3.1625 41 1 10.4337 -1.4499 2.2560 42 1 10.4438 0.3664 4.8125 43 1 11.8248 -0.7167 4.2464 44 1 11.9473 0.5769 2.0672 45 1 10.5663 1.6608 2.6321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116071353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:41 Heat of formation + Delta-G solvation = -25.396133 kcal Electronic energy + Delta-G solvation = -24712.088008 eV Core-core repulsion = 21152.356010 eV Total energy + Delta-G solvation = -3559.731999 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.04918 -38.31508 -37.53974 -36.68038 -35.36611 -32.74248 -32.25553 -31.40285 -27.63397 -27.33297 -26.47428 -24.33375 -22.89795 -22.39009 -22.35867 -20.88059 -20.58256 -19.24113 -17.02119 -16.61392 -16.37039 -15.84948 -15.62241 -15.16863 -15.01123 -14.72244 -14.51996 -14.30540 -14.08732 -13.81698 -13.26984 -13.04390 -12.58527 -12.42575 -12.26443 -12.15833 -11.82618 -11.65138 -11.59703 -11.47834 -11.40097 -11.20058 -11.07631 -10.86862 -10.74481 -10.51827 -10.41216 -10.26564 -9.91921 -9.63879 -8.63195 -8.50806 -8.36740 -8.21942 -7.81762 -5.96581 -3.97666 2.21217 2.96705 3.36319 3.40139 3.43716 3.76410 3.91347 4.15383 4.21602 4.51428 4.83946 4.99671 5.02781 5.05702 5.11766 5.17055 5.25268 5.35120 5.40089 5.52389 5.60075 5.60687 5.64560 5.72300 5.77737 5.81829 5.84817 5.96207 6.03290 6.06805 6.08646 6.40067 6.55622 6.73122 6.75865 7.01600 7.04621 7.42336 7.42382 7.72227 7.91944 8.15476 8.25565 8.48701 8.79424 9.01380 9.64065 11.12633 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.005166 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.447233 B = 5419.226295 C = 7847.800084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.119 3.881 7 N -0.559 5.559 8 C 0.233 3.767 9 C -0.509 4.509 10 H 0.052 0.948 11 C 0.069 3.931 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.506 3.494 18 O -0.564 6.564 19 C 0.491 3.509 20 O -0.445 6.445 21 N -0.694 5.694 22 C 0.089 3.911 23 C -0.197 4.197 24 C -0.192 4.192 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.061 0.939 39 H 0.262 0.738 40 H 0.405 0.595 41 H 0.140 0.860 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 12.891 1.544 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.169 4.169 6 C -0.004 4.004 7 N -0.288 5.288 8 C 0.114 3.886 9 C -0.547 4.547 10 H 0.070 0.930 11 C -0.133 4.133 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.204 1.204 17 C 0.289 3.711 18 O -0.446 6.446 19 C 0.271 3.729 20 O -0.314 6.314 21 N -0.348 5.348 22 C -0.017 4.017 23 C -0.235 4.235 24 C -0.230 4.230 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.240 0.760 41 H 0.158 0.842 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.851 12.156 0.883 12.518 hybrid contribution -0.080 -0.020 1.621 1.623 sum -2.932 12.136 2.504 12.734 Atomic orbital electron populations 1.22369 0.87599 1.02216 1.00139 1.61956 1.07531 1.13976 1.43708 1.22429 1.01490 0.88685 1.00013 1.22072 0.95861 0.98114 0.90865 1.21944 0.93856 1.01186 0.99865 1.21372 0.80520 1.00692 0.97850 1.48238 1.05120 1.23744 1.51747 1.19874 0.95710 0.80765 0.92247 1.21130 1.42725 0.97923 0.92964 0.92951 1.24778 0.95280 0.98202 0.95059 1.69904 1.45370 1.24814 1.13133 0.86649 0.78696 0.81190 0.81344 1.20468 1.21308 1.20355 1.19959 0.87480 0.83681 0.79979 1.90627 1.79244 1.27273 1.47457 1.20260 0.87881 0.84606 0.80129 1.91009 1.78244 1.22501 1.39599 1.45119 1.04312 1.18424 1.66989 1.21561 0.78970 0.99438 1.01768 1.23424 1.03182 1.04316 0.92607 1.23373 1.02135 0.96705 1.00829 0.95903 0.91608 0.91311 0.90847 0.91749 0.95780 0.90502 0.94780 0.91679 0.90591 0.89741 0.90962 0.94890 0.92120 0.92882 0.75994 0.84220 0.88604 0.88132 0.88023 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.07 0.57 0.83 16 2 N -0.55 -6.95 5.02 -251.26 -1.26 -8.21 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 5 C -0.13 -2.03 5.46 -26.72 -0.15 -2.18 16 6 C 0.12 2.12 5.34 -4.04 -0.02 2.10 16 7 N -0.56 -11.95 2.47 -175.57 -0.43 -12.39 16 8 C 0.23 5.83 4.75 -5.19 -0.02 5.80 16 9 C -0.51 -13.98 7.76 -34.44 -0.27 -14.25 16 10 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 11 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 12 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.51 10.67 7.68 -11.59 -0.09 10.58 16 18 O -0.56 -11.75 16.13 5.50 0.09 -11.66 16 19 C 0.49 10.17 7.69 -11.58 -0.09 10.08 16 20 O -0.45 -10.85 11.74 5.50 0.06 -10.79 16 21 N -0.69 -11.34 5.56 -54.24 -0.30 -11.64 16 22 C 0.09 1.27 6.43 -67.93 -0.44 0.83 16 23 C -0.20 -2.23 10.46 -26.69 -0.28 -2.51 16 24 C -0.19 -2.04 10.46 -26.69 -0.28 -2.32 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.02 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.06 1.07 6.55 -51.93 -0.34 0.73 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 36 H 0.07 1.26 7.51 -51.93 -0.39 0.87 16 37 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 38 H 0.06 1.66 5.91 -51.93 -0.31 1.35 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.40 5.88 8.31 -40.82 -0.34 5.54 16 41 H 0.14 2.23 7.40 -51.93 -0.38 1.84 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -31.43 372.32 -8.67 -40.10 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.54 Total: 5.09 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -0.61 Total: 12.39 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -1.26 Total: -57.61 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.15 Total: -22.45 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.43 -8.67 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116071353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.708 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds