Wall clock time and date at job start Fri Apr 10 2020 17:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00312 * 2 1 4 4 C 1.46896 * 110.99750 * 123.96064 * 2 1 3 5 5 C 1.53004 * 109.46863 * 169.99841 * 4 2 1 6 6 C 1.53008 * 109.47055 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47098 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00155 * 270.00294 * 7 6 5 9 9 C 1.50703 * 109.46831 * 265.08168 * 8 7 6 10 10 H 1.08005 * 119.99835 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99972 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00292 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99923 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47540 * 59.99440 * 13 11 9 15 15 H 1.48504 * 109.47199 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46876 * 299.99700 * 13 11 9 17 17 C 1.34771 * 119.99753 * 89.99785 * 7 6 5 18 18 O 1.21348 * 120.00506 * 354.55450 * 17 7 6 19 19 C 1.49448 * 119.99864 * 174.82735 * 17 7 6 20 20 O 1.21350 * 120.00299 * 354.01246 * 19 17 7 21 21 N 1.34782 * 120.00335 * 174.01183 * 19 17 7 22 22 C 1.46493 * 120.00234 * 179.97438 * 21 19 17 23 23 C 1.53000 * 117.50037 * 223.74599 * 22 21 19 24 24 C 1.53002 * 117.49806 * 155.08255 * 22 21 19 25 25 H 1.08999 * 109.46861 * 296.04848 * 1 2 3 26 26 H 1.09004 * 109.46901 * 56.03760 * 1 2 3 27 27 H 1.08997 * 109.47512 * 176.04212 * 1 2 3 28 28 H 1.08994 * 109.47364 * 183.95235 * 3 2 1 29 29 H 1.09000 * 109.47365 * 303.95857 * 3 2 1 30 30 H 1.09009 * 109.46960 * 63.95662 * 3 2 1 31 31 H 1.08999 * 109.47263 * 49.99872 * 4 2 1 32 32 H 1.08994 * 109.47064 * 289.99193 * 4 2 1 33 33 H 1.08999 * 109.47155 * 59.99965 * 5 4 2 34 34 H 1.09001 * 109.47365 * 299.99427 * 5 4 2 35 35 H 1.08999 * 109.46994 * 60.00078 * 6 5 4 36 36 H 1.09001 * 109.46739 * 300.00022 * 6 5 4 37 37 H 1.08998 * 109.47085 * 25.07659 * 8 7 6 38 38 H 1.08998 * 109.47454 * 145.08274 * 8 7 6 39 39 H 0.96999 * 120.00297 * 180.02562 * 12 11 9 40 40 H 0.97001 * 119.99436 * 0.02562 * 21 19 17 41 41 H 1.09003 * 115.54952 * 9.41542 * 22 21 19 42 42 H 1.09000 * 117.49747 * 0.02562 * 23 22 21 43 43 H 1.08993 * 117.50176 * 145.02156 * 23 22 21 44 44 H 1.08997 * 117.50160 * 214.97711 * 24 22 21 45 45 H 1.09002 * 117.50074 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9555 0.9702 6 6 4.0528 -1.7529 2.1553 7 7 5.4976 -1.9348 1.9948 8 6 6.0138 -3.1064 1.2827 9 6 6.3493 -4.1898 2.2752 10 1 6.1940 -4.0221 3.3307 11 6 6.8555 -5.3945 1.8357 12 7 7.0452 -5.5986 0.5503 13 14 7.2721 -6.7372 3.0659 14 1 6.0495 -7.1151 3.8191 15 1 7.7952 -7.9249 2.3442 16 1 8.3023 -6.2390 4.0123 17 6 6.3518 -1.0242 2.5022 18 8 5.9248 -0.0054 3.0045 19 6 7.8253 -1.2662 2.4407 20 8 8.2493 -2.3280 2.0339 21 7 8.6833 -0.3053 2.8370 22 6 10.1276 -0.5428 2.7772 23 6 10.9666 -0.1008 3.9779 24 6 11.0405 0.6797 2.6631 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3431 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7045 1.8723 0.9234 31 1 1.5089 -1.7408 1.1754 32 1 1.7976 -0.2249 2.0627 33 1 3.9909 0.0192 0.9322 34 1 3.7024 -1.4967 0.0450 35 1 3.5664 -2.7276 2.1936 36 1 3.8549 -1.2113 3.0803 37 1 5.2575 -3.4717 0.5880 38 1 6.9115 -2.8294 0.7300 39 1 7.4010 -6.4463 0.2411 40 1 8.3443 0.5433 3.1625 41 1 10.4337 -1.4499 2.2560 42 1 10.4438 0.3664 4.8125 43 1 11.8248 -0.7167 4.2464 44 1 11.9473 0.5769 2.0672 45 1 10.5663 1.6608 2.6321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116071353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:43:40 Heat of formation + Delta-G solvation = -47.414129 kcal Electronic energy + Delta-G solvation = -24713.042780 eV Core-core repulsion = 21152.356010 eV Total energy + Delta-G solvation = -3560.686771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67708 -39.74594 -38.61212 -38.06169 -36.97028 -34.69457 -33.64649 -32.90863 -29.24458 -28.48725 -27.90160 -25.78204 -24.78206 -23.60934 -23.26442 -22.10367 -21.77860 -20.80099 -18.79684 -18.45221 -18.00123 -17.19917 -16.80254 -16.62790 -16.49810 -16.15023 -15.86798 -15.58092 -15.39397 -15.00738 -14.84450 -14.61092 -14.25301 -13.80449 -13.45017 -13.41036 -13.24914 -12.99955 -12.92609 -12.69040 -12.59573 -12.48647 -12.41727 -12.38870 -12.30925 -12.22053 -11.87470 -11.70343 -11.51867 -11.45192 -10.58672 -10.17527 -9.78257 -9.57160 -9.30566 -8.10798 -6.18392 0.55251 1.39726 1.42907 1.47799 1.51179 2.26946 2.42774 2.64287 3.00653 3.05947 3.23031 3.50549 3.79408 3.93248 4.07943 4.08946 4.09253 4.21697 4.37611 4.42342 4.50171 4.58235 4.66611 4.73942 4.76151 4.78115 4.79765 4.88726 5.00381 5.01729 5.02823 5.09962 5.22194 5.22612 5.32238 5.48148 5.60757 5.78647 6.05728 6.12337 6.13842 6.22001 6.37330 6.82706 6.89819 7.21244 7.46714 8.97750 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.005166 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.447233 B = 5419.226295 C = 7847.800084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.566 5.566 3 C 0.023 3.977 4 C 0.066 3.934 5 C -0.115 4.115 6 C 0.117 3.883 7 N -0.565 5.565 8 C 0.254 3.746 9 C -0.512 4.512 10 H 0.043 0.957 11 C 0.020 3.980 12 N -0.925 5.925 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.503 3.497 18 O -0.561 6.561 19 C 0.487 3.513 20 O -0.494 6.494 21 N -0.673 5.673 22 C 0.043 3.957 23 C -0.180 4.180 24 C -0.161 4.161 25 H 0.030 0.970 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.020 0.980 38 H 0.036 0.964 39 H 0.263 0.737 40 H 0.415 0.585 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 14.190 2.709 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.291 5.291 3 C -0.125 4.125 4 C -0.062 4.062 5 C -0.154 4.154 6 C -0.006 4.006 7 N -0.294 5.294 8 C 0.134 3.866 9 C -0.551 4.551 10 H 0.062 0.938 11 C -0.179 4.179 12 N -0.565 5.565 13 Si 0.778 3.222 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.207 1.207 17 C 0.286 3.714 18 O -0.443 6.443 19 C 0.267 3.733 20 O -0.366 6.366 21 N -0.327 5.327 22 C -0.062 4.062 23 C -0.219 4.219 24 C -0.199 4.199 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.252 0.748 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.138 0.862 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.016 13.522 2.078 14.009 hybrid contribution 0.005 -0.292 1.271 1.304 sum -3.011 13.230 3.349 13.975 Atomic orbital electron populations 1.22422 0.85841 1.02867 1.01116 1.61935 1.09221 1.14519 1.43388 1.22429 1.00641 0.88430 1.01013 1.21957 0.93786 0.98886 0.91583 1.21765 0.95816 0.99866 0.97957 1.21558 0.78594 1.01295 0.99103 1.48189 1.06697 1.22891 1.51669 1.19351 0.94256 0.81395 0.91646 1.21302 1.42319 0.98677 0.92777 0.93826 1.25528 0.95271 1.00419 0.96680 1.70015 1.46334 1.25403 1.14737 0.85711 0.78659 0.78646 0.79174 1.19122 1.20620 1.20721 1.20123 0.87876 0.83609 0.79795 1.90612 1.79377 1.26930 1.47362 1.20307 0.88112 0.84812 0.80031 1.90990 1.78746 1.24476 1.42373 1.45011 1.05051 1.17629 1.65011 1.21711 0.78014 1.01081 1.05413 1.23517 1.02192 1.03717 0.92458 1.23489 1.01007 0.95525 0.99892 0.95126 0.90319 0.90945 0.92330 0.90138 0.95262 0.89822 0.94054 0.92515 0.92330 0.89610 0.90175 0.96165 0.94621 0.92847 0.74778 0.86739 0.87736 0.86919 0.86247 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.57 127.69 1.22 1.68 16 2 N -0.57 -13.64 5.02 -948.86 -4.76 -18.40 16 3 C 0.02 0.50 9.32 127.69 1.19 1.69 16 4 C 0.07 1.69 4.96 86.31 0.43 2.12 16 5 C -0.12 -3.63 5.46 30.60 0.17 -3.46 16 6 C 0.12 4.19 5.34 86.38 0.46 4.65 16 7 N -0.56 -24.77 2.47 -827.73 -2.04 -26.81 16 8 C 0.25 13.22 4.75 85.63 0.41 13.63 16 9 C -0.51 -28.84 7.76 25.60 0.20 -28.64 16 10 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 11 C 0.02 1.14 5.46 84.65 0.46 1.60 16 12 N -0.92 -55.34 13.29 21.45 0.28 -55.06 16 13 Si 0.95 45.31 29.54 68.60 2.03 47.33 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 17 C 0.50 21.52 7.68 87.27 0.67 22.19 16 18 O -0.56 -23.11 16.13 -3.24 -0.05 -23.17 16 19 C 0.49 20.69 7.69 87.27 0.67 21.37 16 20 O -0.49 -25.14 11.74 -3.25 -0.04 -25.18 16 21 N -0.67 -21.86 5.56 -443.86 -2.47 -24.33 16 22 C 0.04 1.21 6.43 44.99 0.29 1.49 16 23 C -0.18 -3.67 10.46 30.62 0.32 -3.35 16 24 C -0.16 -2.99 10.46 30.62 0.32 -2.67 16 25 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 27 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 28 H 0.06 1.43 6.47 -2.39 -0.02 1.41 16 29 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 30 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 32 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.06 1.88 6.55 -2.39 -0.02 1.86 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 3.02 8.07 -2.39 -0.02 3.01 16 36 H 0.08 2.74 7.51 -2.39 -0.02 2.72 16 37 H 0.02 1.10 8.03 -2.39 -0.02 1.08 16 38 H 0.04 2.07 5.91 -2.39 -0.01 2.05 16 39 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.42 11.59 8.31 -92.71 -0.77 10.81 16 41 H 0.11 3.81 7.40 -2.39 -0.02 3.79 16 42 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -68.75 372.32 -0.04 -68.78 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.20 Total: 24.53 kcal Atomic # 6 Polarization: 25.49 SS G_CDS: 6.81 Total: 32.30 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -8.99 Total: -124.60 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.09 Total: -48.35 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -68.75 -0.04 -68.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116071353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.370 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds