Wall clock time and date at job start Fri Apr 10 2020 17:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00099 * 2 1 4 4 C 1.53004 * 109.47034 * 293.95512 * 3 2 1 5 5 C 1.50699 * 109.46972 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00380 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99902 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99973 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47044 * 180.02562 * 8 7 5 10 10 N 1.46502 * 109.47044 * 180.02562 * 9 8 7 11 11 C 1.36935 * 119.99899 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00226 * 359.97438 * 11 10 9 13 13 C 1.38818 * 119.99963 * 180.02562 * 11 10 9 14 14 N 1.31621 * 119.99916 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00065 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47081 * 89.99719 * 15 13 11 17 17 H 1.48504 * 109.46980 * 209.99742 * 15 13 11 18 18 H 1.48502 * 109.47073 * 329.99579 * 15 13 11 19 19 C 1.46896 * 111.00236 * 123.95512 * 2 1 3 20 20 C 1.52997 * 109.46848 * 306.04597 * 19 2 1 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 2 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47053 * 66.04311 * 19 2 1 25 25 H 1.08994 * 109.47338 * 296.04783 * 1 2 3 26 26 H 1.08998 * 109.46955 * 56.04897 * 1 2 3 27 27 H 1.09002 * 109.47088 * 176.04150 * 1 2 3 28 28 H 1.09003 * 109.46826 * 53.95172 * 3 2 1 29 29 H 1.08998 * 109.47297 * 173.95374 * 3 2 1 30 30 H 1.09003 * 109.47036 * 299.99531 * 4 3 2 31 31 H 1.08998 * 109.47192 * 59.99797 * 4 3 2 32 32 H 0.97002 * 120.00439 * 0.02562 * 7 5 4 33 33 H 1.09003 * 109.46958 * 299.99780 * 8 7 5 34 34 H 1.08998 * 109.47155 * 59.99976 * 8 7 5 35 35 H 1.09003 * 109.47036 * 299.99698 * 9 8 7 36 36 H 1.08998 * 109.47192 * 59.99965 * 9 8 7 37 37 H 0.96998 * 120.00255 * 359.97438 * 10 9 8 38 38 H 0.96997 * 119.99808 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.47220 * 186.04666 * 19 2 1 40 40 H 1.08996 * 109.47853 * 300.00000 * 20 19 2 41 41 H 1.09002 * 109.47153 * 60.00028 * 20 19 2 42 42 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 44 44 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 45 45 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 46 46 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 48 48 H 1.08992 * 109.47399 * 300.00238 * 24 19 2 49 49 H 1.09004 * 109.46724 * 60.00724 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1710 3.4645 -1.3180 6 8 2.7857 3.8782 -0.3578 7 7 1.9704 4.2634 -2.3848 8 6 2.4944 5.6314 -2.3844 9 6 2.1305 6.3174 -3.7027 10 7 2.6551 7.6853 -3.7025 11 6 2.4505 8.4972 -4.7860 12 1 1.9028 8.1291 -5.6409 13 6 2.9480 9.7932 -4.7860 14 7 3.6159 10.2417 -3.7443 15 14 2.6695 10.9006 -6.2644 16 1 1.4011 11.6525 -6.0877 17 1 3.7991 11.8569 -6.3863 18 1 2.5869 10.0726 -7.4945 19 6 1.9955 -0.7660 1.1375 20 6 1.3858 -0.2343 2.4362 21 6 1.9336 -1.0325 3.6210 22 6 1.5692 -2.5090 3.4534 23 6 2.1789 -3.0407 2.1547 24 6 1.6314 -2.2426 0.9703 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 1.5610 1.9273 0.8309 29 1 3.0797 1.3444 0.1082 30 1 2.0658 1.5015 -2.1492 31 1 0.5472 2.0845 -1.4265 32 1 1.4784 3.9328 -3.1527 33 1 2.0589 6.1870 -1.5538 34 1 3.5786 5.6052 -2.2752 35 1 2.5657 5.7620 -4.5335 36 1 1.0463 6.3437 -3.8114 37 1 3.1467 8.0161 -2.9345 38 1 3.9632 11.1474 -3.7442 39 1 3.0798 -0.6611 1.1755 40 1 1.6450 0.8176 2.5554 41 1 0.3015 -0.3393 2.3982 42 1 1.4989 -0.6541 4.5461 43 1 3.0179 -0.9279 3.6592 44 1 0.4849 -2.6136 3.4152 45 1 1.9599 -3.0777 4.2973 46 1 1.9197 -4.0926 2.0356 47 1 3.2632 -2.9360 2.1930 48 1 0.5472 -2.3475 0.9323 49 1 2.0659 -2.6213 0.0451 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131815697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:13 Heat of formation + Delta-G solvation = -44.412686 kcal Electronic energy + Delta-G solvation = -23721.337284 eV Core-core repulsion = 20296.613761 eV Total energy + Delta-G solvation = -3424.723524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.08123 -39.33301 -36.36585 -35.61651 -33.81517 -31.95368 -31.17356 -31.02446 -29.15413 -27.82638 -26.47326 -23.96297 -23.21558 -22.59398 -21.46975 -21.07158 -20.04234 -19.66548 -17.44198 -17.11728 -16.27053 -15.93546 -15.49367 -15.30859 -14.97241 -14.65402 -14.60394 -14.50426 -14.27666 -13.81437 -13.58404 -13.18289 -12.99988 -12.89163 -12.70350 -12.67191 -12.48249 -12.07820 -11.84804 -11.47206 -11.41809 -11.34733 -11.11841 -11.10414 -10.87159 -10.82262 -10.80277 -10.62898 -10.43205 -10.12533 -9.86440 -9.65872 -8.98112 -8.81293 -8.52092 -6.99630 -5.79811 -3.10548 2.75613 3.16393 3.42184 3.46891 3.49071 3.75793 4.31121 4.39535 4.56437 4.58638 4.68109 4.76417 4.85092 4.88575 5.01788 5.03967 5.07522 5.13763 5.20584 5.25927 5.30459 5.34100 5.44339 5.50035 5.54660 5.64986 5.65958 5.72405 5.73496 5.74502 5.77154 5.79403 5.82788 5.89107 5.96923 6.01112 6.06219 6.16030 6.50423 6.70856 6.75748 6.78897 6.80528 7.64125 7.65709 8.34718 8.38200 9.49013 10.03975 10.38701 11.42757 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.051361 B = 0.001874 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.030832 B =14941.263871 C =15230.960983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.537 5.537 3 C 0.070 3.930 4 C -0.137 4.137 5 C 0.510 3.490 6 O -0.545 6.545 7 N -0.724 5.724 8 C 0.110 3.890 9 C 0.145 3.855 10 N -0.730 5.730 11 C -0.244 4.244 12 H 0.072 0.928 13 C -0.012 4.012 14 N -0.931 5.931 15 Si 0.911 3.089 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.281 1.281 19 C 0.086 3.914 20 C -0.155 4.155 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.109 4.109 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.400 0.600 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 -28.858 11.560 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.260 5.260 3 C -0.058 4.058 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.423 6.423 7 N -0.375 5.375 8 C -0.013 4.013 9 C 0.016 3.984 10 N -0.375 5.375 11 C -0.375 4.375 12 H 0.090 0.910 13 C -0.209 4.209 14 N -0.579 5.579 15 Si 0.741 3.259 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.022 4.022 20 C -0.194 4.194 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.147 4.147 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.234 0.766 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.160 -28.696 11.635 31.572 hybrid contribution -0.541 1.141 -0.217 1.281 sum -6.701 -27.555 11.418 30.570 Atomic orbital electron populations 1.22538 0.87969 1.02223 1.00825 1.62203 1.07843 1.13672 1.42272 1.21807 1.01018 0.87324 0.95656 1.21631 1.02633 0.92780 1.00688 1.20583 0.79941 0.87377 0.82527 1.90712 1.41254 1.76001 1.34328 1.45958 1.57594 1.14568 1.19415 1.21568 0.99400 0.80668 0.99693 1.20759 0.96849 0.87626 0.93119 1.42194 1.66517 1.08296 1.20475 1.19200 1.29532 0.93444 0.95365 0.91019 1.24789 1.00634 0.97494 0.97966 1.69670 1.41390 1.17272 1.29534 0.86141 0.77239 0.80544 0.81933 1.21636 1.21680 1.20705 1.21735 0.99565 0.93378 0.87523 1.22247 1.01134 1.00079 0.95917 1.21466 1.01076 0.95042 0.97780 1.21553 1.00712 0.95936 0.97579 1.21518 1.00563 0.99125 0.94487 1.21554 1.01081 0.93702 0.98369 0.95029 0.91276 0.91245 0.93720 0.89989 0.88086 0.89020 0.76638 0.91405 0.91332 0.95787 0.95841 0.78013 0.93364 0.89991 0.91725 0.91540 0.92126 0.91893 0.92158 0.92120 0.91888 0.91888 0.91953 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.58 60.06 0.52 0.61 16 2 N -0.54 -4.59 4.71 -234.89 -1.11 -5.69 16 3 C 0.07 0.71 3.82 -3.82 -0.01 0.70 16 4 C -0.14 -1.32 5.63 -27.88 -0.16 -1.48 16 5 C 0.51 7.07 7.83 -10.99 -0.09 6.99 16 6 O -0.55 -9.87 15.98 5.56 0.09 -9.78 16 7 N -0.72 -9.78 5.56 -60.29 -0.33 -10.12 16 8 C 0.11 1.92 5.79 -4.04 -0.02 1.89 16 9 C 0.14 2.85 6.37 -4.04 -0.03 2.82 16 10 N -0.73 -18.70 5.60 -59.90 -0.34 -19.03 16 11 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 13 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 14 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 15 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.09 0.68 2.19 -67.72 -0.15 0.53 16 20 C -0.15 -1.18 4.45 -26.73 -0.12 -1.30 16 21 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 22 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 23 C -0.12 -0.69 5.92 -26.75 -0.16 -0.85 16 24 C -0.11 -0.72 5.12 -26.75 -0.14 -0.86 16 25 H 0.03 0.24 6.21 -51.93 -0.32 -0.08 16 26 H 0.07 0.47 6.30 -51.93 -0.33 0.14 16 27 H 0.07 0.45 6.47 -51.93 -0.34 0.11 16 28 H 0.04 0.51 7.01 -51.93 -0.36 0.15 16 29 H 0.08 0.93 7.89 -51.93 -0.41 0.53 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.73 6.47 -51.93 -0.34 0.39 16 32 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.48 7.67 -40.82 -0.31 10.17 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 40 H 0.06 0.58 6.91 -51.93 -0.36 0.22 16 41 H 0.07 0.50 6.33 -51.93 -0.33 0.18 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -32.52 376.90 -10.04 -42.56 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.81 Total: 6.94 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.92 Total: -0.21 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -1.05 Total: -62.52 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.52 -10.04 -42.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131815697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.858 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds