Wall clock time and date at job start Fri Apr 10 2020 17:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47272 * 2 1 4 4 C 1.46898 * 110.99851 * 293.95356 * 3 2 1 5 5 C 1.46900 * 110.99813 * 170.00227 * 3 2 1 6 6 C 1.53000 * 109.46875 * 189.99937 * 5 3 2 7 7 C 1.50701 * 109.47177 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99990 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00117 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.49552 * 34.93423 * 10 9 7 12 12 C 1.53037 * 109.50139 * 154.99574 * 10 9 7 13 13 C 1.53038 * 109.53862 * 181.31318 * 12 10 9 14 14 C 1.53190 * 109.31575 * 298.63643 * 13 12 10 15 15 H 1.08998 * 109.59011 * 294.84874 * 14 13 12 16 16 C 1.53000 * 109.58628 * 174.42187 * 14 13 12 17 17 N 1.46930 * 108.77377 * 54.63731 * 14 13 12 18 18 C 1.36931 * 120.63195 * 126.41168 * 17 14 13 19 19 H 1.08006 * 119.99995 * 330.16627 * 18 17 14 20 20 C 1.38809 * 120.00018 * 150.15829 * 18 17 14 21 21 N 1.31618 * 120.00351 * 344.48843 * 20 18 17 22 22 Si 1.86805 * 119.99852 * 164.48053 * 20 18 17 23 23 H 1.48501 * 109.47425 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46786 * 120.00666 * 22 20 18 25 25 H 1.48498 * 109.47311 * 240.00510 * 22 20 18 26 26 C 1.46927 * 118.73463 * 306.38882 * 17 14 13 27 27 H 1.09000 * 109.47068 * 59.99956 * 1 2 3 28 28 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47153 * 300.00229 * 1 2 3 30 30 H 1.08999 * 109.47153 * 239.99771 * 2 1 3 31 31 H 1.09000 * 109.47068 * 120.00043 * 2 1 3 32 32 H 1.08998 * 109.47210 * 59.99883 * 4 3 2 33 33 H 1.09007 * 109.47318 * 300.00196 * 4 3 2 34 34 H 1.08999 * 109.47067 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.46976 * 309.99705 * 5 3 2 36 36 H 1.08999 * 109.47611 * 69.99696 * 5 3 2 37 37 H 1.08997 * 109.47130 * 299.99674 * 6 5 3 38 38 H 1.08993 * 109.47342 * 59.99921 * 6 5 3 39 39 H 0.97004 * 119.99934 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.46116 * 301.34192 * 12 10 9 41 41 H 1.09011 * 109.45767 * 61.31082 * 12 10 9 42 42 H 1.08994 * 109.49616 * 58.59358 * 13 12 10 43 43 H 1.09008 * 109.49362 * 178.68406 * 13 12 10 44 44 H 1.08998 * 109.47226 * 60.00283 * 16 14 13 45 45 H 1.09003 * 109.47113 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.47090 * 300.00201 * 16 14 13 47 47 H 0.96994 * 120.00552 * 179.97438 * 21 20 18 48 48 H 1.08994 * 109.58886 * 293.82283 * 26 17 14 49 49 H 1.09006 * 109.58075 * 173.39495 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 3.4685 1.4310 0.2381 6 6 3.9000 2.8791 0.4790 7 6 5.3862 2.9263 0.7239 8 8 6.0363 1.9025 0.7078 9 7 5.9928 4.1061 0.9619 10 6 7.4377 4.1521 1.1994 11 1 7.9310 3.3960 0.5885 12 6 7.9726 5.5371 0.8284 13 6 9.4870 5.5759 1.0452 14 6 9.7939 5.3192 2.5239 15 1 9.3974 6.1362 3.1266 16 6 11.3075 5.2184 2.7236 17 7 9.1589 4.0569 2.9265 18 6 9.8927 3.0651 3.5206 19 1 10.9414 2.9553 3.2868 20 6 9.2887 2.2010 4.4236 21 7 8.1177 2.5041 4.9423 22 14 10.1380 0.6076 4.9024 23 1 11.4342 0.5025 4.1854 24 1 10.3809 0.5970 6.3675 25 1 9.2744 -0.5434 4.5356 26 6 7.7214 3.8792 2.6798 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5866 2.0793 -1.3703 33 1 2.1202 1.5371 -2.0930 34 1 2.0450 3.0901 -1.2269 35 1 3.7122 0.8289 1.1134 36 1 3.9926 1.0358 -0.6321 37 1 3.6563 3.4812 -0.3962 38 1 3.3760 3.2743 1.3492 39 1 5.4728 4.9248 0.9751 40 1 7.7501 5.7439 -0.2184 41 1 7.4966 6.2904 1.4564 42 1 9.9615 4.8064 0.4362 43 1 9.8706 6.5552 0.7586 44 1 11.7779 6.1511 2.4125 45 1 11.5237 5.0353 3.7761 46 1 11.6991 4.3964 2.1242 47 1 7.6955 1.9002 5.5729 48 1 7.1559 4.5788 3.2952 49 1 7.4323 2.8572 2.9250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132411403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:50 Heat of formation + Delta-G solvation = -21.906644 kcal Electronic energy + Delta-G solvation = -25203.619979 eV Core-core repulsion = 21779.872391 eV Total energy + Delta-G solvation = -3423.747588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.56455 -38.04956 -37.34357 -34.33856 -32.77968 -32.42019 -30.72123 -29.85458 -29.28243 -26.89337 -25.85074 -24.90368 -22.97279 -22.19383 -21.02309 -20.44266 -19.82706 -19.13630 -17.00012 -16.41472 -15.94150 -15.61374 -15.37528 -15.06063 -14.67681 -14.31914 -13.86619 -13.77971 -13.69519 -13.34192 -13.15065 -12.94961 -12.57948 -12.36108 -12.25208 -11.97251 -11.91488 -11.84853 -11.46165 -11.31976 -11.09415 -11.02782 -10.87282 -10.84655 -10.68910 -10.47789 -10.36122 -10.21839 -9.92818 -9.71444 -9.41077 -9.25615 -8.49378 -8.45004 -8.37967 -6.56649 -5.70512 -3.15298 3.10766 3.42796 3.46072 3.52277 3.53435 3.99458 4.57051 4.81181 4.88347 5.04088 5.09645 5.21412 5.30311 5.33357 5.37705 5.38319 5.40578 5.50857 5.54039 5.60690 5.66282 5.72035 5.77614 5.83374 5.92742 6.00379 6.02385 6.07220 6.13719 6.30003 6.34135 6.41882 6.48380 6.54660 6.65559 6.78629 6.91921 6.93182 7.01822 7.07510 7.15776 7.36694 7.78078 7.89783 8.00450 8.54213 8.73030 9.28541 9.92761 10.48458 11.37648 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.003836 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.714503 B = 7297.487441 C = 8757.108676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.545 5.545 4 C 0.018 3.982 5 C 0.070 3.930 6 C -0.136 4.136 7 C 0.510 3.490 8 O -0.536 6.536 9 N -0.722 5.722 10 C 0.116 3.884 11 H 0.080 0.920 12 C -0.116 4.116 13 C -0.126 4.126 14 C 0.165 3.835 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.584 5.584 18 C -0.253 4.253 19 H 0.070 0.930 20 C 0.007 3.993 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.169 3.831 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.392 0.608 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.252 0.748 48 H 0.016 0.984 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 3.705 -11.719 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.131 4.131 5 C -0.058 4.058 6 C -0.176 4.176 7 C 0.295 3.705 8 O -0.413 6.413 9 N -0.372 5.372 10 C 0.011 3.989 11 H 0.098 0.902 12 C -0.154 4.154 13 C -0.166 4.166 14 C 0.058 3.942 15 H 0.042 0.958 16 C -0.194 4.194 17 N -0.307 5.307 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.215 1.215 26 C 0.042 3.958 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.225 0.775 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.034 0.966 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.423 3.095 -11.209 16.300 hybrid contribution 0.402 -0.776 -0.349 0.941 sum -11.020 2.319 -11.558 16.138 Atomic orbital electron populations 1.21796 0.94926 1.01450 1.02379 1.22088 0.95947 0.88746 1.01069 1.62003 1.14290 1.16062 1.34583 1.22489 1.01400 0.99310 0.89866 1.21817 0.85971 0.95939 1.02028 1.21614 0.93101 0.98820 1.04070 1.20478 0.89562 0.83820 0.76678 1.90740 1.66649 1.33253 1.50653 1.46085 1.10015 1.08698 1.72441 1.21956 0.78263 0.96947 1.01733 0.90191 1.21675 0.97222 0.96780 0.99720 1.22046 0.94480 1.00277 0.99801 1.20488 0.92666 0.89550 0.91472 0.95787 1.21798 0.95743 0.99424 1.02396 1.44032 1.05133 1.12385 1.69177 1.19168 0.94559 1.06811 1.17676 0.91247 1.25080 0.97475 1.00144 0.96518 1.70010 1.17279 1.36043 1.31042 0.86281 0.79005 0.84158 0.77677 1.20229 1.21806 1.21525 1.21057 0.84461 1.02517 0.87715 0.92811 0.92398 0.91793 0.94944 0.90537 0.91283 0.95741 0.91206 0.89697 0.94013 0.89489 0.88218 0.77522 0.93198 0.92316 0.92131 0.92743 0.94375 0.92019 0.92798 0.93802 0.96562 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.84 37.16 0.37 -0.85 16 2 C 0.05 0.50 5.68 -3.82 -0.02 0.48 16 3 N -0.54 -6.11 4.76 -242.92 -1.16 -7.27 16 4 C 0.02 0.16 9.13 60.06 0.55 0.71 16 5 C 0.07 0.93 4.25 -3.82 -0.02 0.92 16 6 C -0.14 -1.70 5.63 -27.88 -0.16 -1.86 16 7 C 0.51 8.77 7.80 -10.99 -0.09 8.68 16 8 O -0.54 -11.90 15.65 5.55 0.09 -11.81 16 9 N -0.72 -11.67 5.08 -53.69 -0.27 -11.94 16 10 C 0.12 2.28 2.60 -67.81 -0.18 2.10 16 11 H 0.08 1.80 7.58 -51.93 -0.39 1.40 16 12 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16 13 C -0.13 -2.17 5.37 -26.61 -0.14 -2.31 16 14 C 0.16 3.41 3.50 -67.60 -0.24 3.18 16 15 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 16 C -0.14 -2.58 7.95 37.16 0.30 -2.29 16 17 N -0.58 -14.70 2.99 -164.77 -0.49 -15.19 16 18 C -0.25 -7.00 8.58 -15.06 -0.13 -7.13 16 19 H 0.07 1.88 6.23 -52.48 -0.33 1.55 16 20 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 21 N -0.90 -26.94 11.23 55.49 0.62 -26.31 16 22 Si 0.90 22.63 29.58 -169.99 -5.03 17.60 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 C 0.17 4.14 4.86 -3.71 -0.02 4.13 16 27 H 0.05 0.41 6.55 -51.93 -0.34 0.07 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.03 0.33 8.12 -51.93 -0.42 -0.10 16 31 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 32 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.59 6.30 -51.93 -0.33 0.26 16 35 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 36 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.09 0.87 6.47 -51.93 -0.34 0.54 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.39 4.91 8.60 -40.82 -0.35 4.56 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 46 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 48 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -32.62 375.38 -9.55 -42.17 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.96 Total: 3.27 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 0.00 Total: 3.84 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -1.30 Total: -60.72 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.62 -9.55 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132411403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.262 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds