Wall clock time and date at job start Fri Apr 10 2020 17:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46484 * 2 1 4 4 C 1.53044 * 109.46054 * 240.02515 * 2 1 3 5 5 C 1.53185 * 109.31391 * 301.35751 * 4 2 1 6 6 N 1.46919 * 108.77755 * 305.36526 * 5 4 2 7 7 C 1.34775 * 120.63470 * 233.58518 * 6 5 4 8 8 O 1.21273 * 120.00621 * 179.97438 * 7 6 5 9 9 C 1.50709 * 119.99567 * 359.97438 * 7 6 5 10 10 C 1.53005 * 109.46870 * 180.02562 * 9 7 6 11 11 N 1.46902 * 109.46590 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99573 * 169.99897 * 11 10 9 13 13 C 1.46898 * 111.00283 * 293.95038 * 11 10 9 14 14 C 1.46933 * 118.74175 * 53.85550 * 6 5 4 15 15 C 1.53046 * 109.45160 * 119.96477 * 2 1 3 16 16 H 1.08999 * 109.49552 * 178.59906 * 15 2 1 17 17 C 1.52991 * 109.49544 * 298.66388 * 15 2 1 18 18 N 1.46503 * 109.46934 * 184.99876 * 17 15 2 19 19 C 1.36946 * 119.99763 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00112 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99441 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99456 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47278 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47157 * 119.99856 * 23 21 19 26 26 H 1.48496 * 109.46749 * 239.99710 * 23 21 19 27 27 H 1.08997 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47157 * 299.97181 * 1 2 3 29 29 H 1.09000 * 109.47216 * 59.96986 * 1 2 3 30 30 H 1.09008 * 109.49760 * 181.40322 * 4 2 1 31 31 H 1.09001 * 109.51822 * 61.32727 * 4 2 1 32 32 H 1.09003 * 109.58876 * 185.57185 * 5 4 2 33 33 H 1.08999 * 109.58595 * 65.14893 * 5 4 2 34 34 H 1.08995 * 109.46882 * 59.99947 * 9 7 6 35 35 H 1.09000 * 109.46815 * 299.99803 * 9 7 6 36 36 H 1.08993 * 109.47005 * 60.00239 * 10 9 7 37 37 H 1.09000 * 109.47130 * 299.99474 * 10 9 7 38 38 H 1.08999 * 109.46692 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 40 40 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 41 41 H 1.08997 * 109.47334 * 296.05250 * 13 11 10 42 42 H 1.09000 * 109.46674 * 56.05127 * 13 11 10 43 43 H 1.08995 * 109.47296 * 176.04950 * 13 11 10 44 44 H 1.09008 * 109.58101 * 65.92995 * 14 6 5 45 45 H 1.08996 * 109.59012 * 186.35464 * 14 6 5 46 46 H 1.08997 * 109.47714 * 304.99858 * 17 15 2 47 47 H 1.08997 * 109.47443 * 64.99929 * 17 15 2 48 48 H 0.96994 * 120.00282 * 0.02562 * 18 17 15 49 49 H 0.96998 * 120.00144 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 1.4993 -2.1542 -1.2641 6 7 1.8620 -2.8089 0.0001 7 6 2.5148 -3.9880 0.0004 8 8 2.8090 -4.5181 1.0506 9 6 2.8793 -4.6477 -1.3048 10 6 3.6075 -5.9639 -1.0250 11 7 3.9622 -6.6072 -2.2971 12 6 4.8643 -7.7457 -2.0778 13 6 2.7590 -7.0225 -3.0305 14 6 1.4941 -2.1568 1.2644 15 6 2.0396 -0.7208 1.2502 16 1 3.1293 -0.7430 1.2385 17 6 1.5573 0.0200 2.4989 18 7 2.1426 -0.5993 3.6906 19 6 1.8517 -0.1028 4.9333 20 1 1.1912 0.7456 5.0348 21 6 2.4068 -0.6893 6.0624 22 7 3.2122 -1.7229 5.9387 23 14 2.0094 -0.0124 7.7575 24 1 1.0862 1.1433 7.6252 25 1 1.3637 -1.0712 8.5745 26 1 3.2627 0.4292 8.4204 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5134 0.8903 29 1 -0.3633 0.5143 -0.8897 30 1 3.1296 -0.7432 -1.2381 31 1 1.6964 -0.1937 -2.1401 32 1 1.9379 -2.7020 -2.0983 33 1 0.4144 -2.1346 -1.3673 34 1 3.5300 -3.9864 -1.8768 35 1 1.9728 -4.8486 -1.8758 36 1 2.9563 -6.6249 -0.4531 37 1 4.5139 -5.7633 -0.4537 38 1 5.1112 -8.2033 -3.0357 39 1 5.7777 -7.3978 -1.5954 40 1 4.3734 -8.4804 -1.4395 41 1 2.2287 -7.7832 -2.4576 42 1 2.1086 -6.1606 -3.1793 43 1 3.0469 -7.4319 -3.9988 44 1 0.4087 -2.1374 1.3632 45 1 1.9293 -2.7063 2.0991 46 1 1.8652 1.0641 2.4437 47 1 0.4703 -0.0356 2.5573 48 1 2.7362 -1.3610 3.5995 49 1 3.5997 -2.1329 6.7277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133090224.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:32 Heat of formation + Delta-G solvation = -25.878271 kcal Electronic energy + Delta-G solvation = -25241.690786 eV Core-core repulsion = 21817.770975 eV Total energy + Delta-G solvation = -3423.919811 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.34999 -38.38785 -37.29089 -34.90707 -33.47734 -31.96666 -31.37424 -29.73627 -27.83488 -27.63318 -26.15273 -24.95470 -24.13086 -23.10677 -21.41234 -21.13902 -19.45286 -18.09689 -17.30092 -16.86440 -16.03830 -15.90616 -15.31702 -15.03238 -14.95028 -14.75746 -14.63623 -14.20801 -13.78539 -13.52692 -13.32103 -12.98453 -12.75878 -12.67452 -12.59150 -12.41394 -12.07914 -11.95157 -11.84047 -11.62195 -11.61044 -11.19984 -11.05725 -11.02923 -10.86794 -10.77603 -10.58520 -10.24029 -10.14373 -9.90133 -9.60960 -9.49073 -8.81497 -8.62013 -8.37956 -6.84476 -5.68172 -2.97772 2.79982 3.07115 3.47868 3.52687 3.55567 3.77119 4.60461 4.64462 4.69033 4.76985 4.87131 4.91937 4.95352 4.99843 5.13854 5.21793 5.27594 5.29774 5.32203 5.36945 5.43939 5.58229 5.63604 5.64659 5.65892 5.69752 5.73523 5.76755 5.85263 5.86874 5.94286 5.99742 6.04973 6.20514 6.35655 6.38186 6.40327 6.62710 6.70856 6.75072 6.77016 6.82281 6.93914 7.58175 7.76422 8.36794 8.49557 9.60546 10.19140 10.53229 11.54181 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003628 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.346346 B = 7716.125511 C = 9271.312882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.611 5.611 7 C 0.510 3.490 8 O -0.533 6.533 9 C -0.134 4.134 10 C 0.068 3.932 11 N -0.550 5.550 12 C 0.025 3.975 13 C 0.019 3.981 14 C 0.120 3.880 15 C -0.101 4.101 16 H 0.073 0.927 17 C 0.160 3.840 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.020 0.980 47 H 0.022 0.978 48 H 0.385 0.615 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 -5.414 -23.174 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.018 4.018 6 N -0.345 5.345 7 C 0.297 3.703 8 O -0.409 6.409 9 C -0.175 4.175 10 C -0.060 4.060 11 N -0.274 5.274 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.002 4.002 15 C -0.121 4.121 16 H 0.091 0.909 17 C 0.032 3.968 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.038 0.962 47 H 0.040 0.960 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.498 -5.271 -22.758 23.494 hybrid contribution -0.444 -0.377 1.376 1.494 sum -2.943 -5.648 -21.382 22.310 Atomic orbital electron populations 1.21984 0.95285 1.01939 1.01753 1.21072 0.95969 0.99365 0.93989 0.90890 1.21942 1.01210 0.95143 0.98425 1.21758 1.00247 0.93775 0.85970 1.48181 1.57494 1.21173 1.07656 1.20581 0.77581 0.80902 0.91245 1.90769 1.53274 1.63269 1.33588 1.21643 1.02015 0.97838 0.95955 1.21864 1.00586 0.93927 0.89664 1.61983 1.16085 1.28474 1.20850 1.22366 0.96861 0.91903 1.01189 1.22460 0.92110 0.99995 0.98386 1.21817 0.99653 0.92925 0.85804 1.21756 1.00816 0.94461 0.95075 0.90856 1.20678 0.95932 0.94706 0.85445 1.42437 1.56836 1.37700 1.00830 1.19245 1.23164 1.10949 0.83802 0.91218 1.24758 1.00073 0.98350 0.97799 1.69685 1.35449 1.24249 1.28358 0.86145 0.77372 0.77944 0.84892 1.20617 1.21900 1.21931 0.92470 0.91816 0.93184 0.91473 0.90921 0.90100 0.91237 0.88226 0.89263 0.93791 0.89697 0.91396 0.91114 0.95487 0.95559 0.91210 0.91412 0.91535 0.87995 0.96239 0.95997 0.78111 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.11 37.15 0.30 -1.41 16 2 C -0.08 -1.04 2.71 -90.58 -0.25 -1.28 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.27 5.62 -26.61 -0.15 -1.42 16 5 C 0.11 1.03 5.87 -3.72 -0.02 1.01 16 6 N -0.61 -8.51 2.97 -172.50 -0.51 -9.02 16 7 C 0.51 7.73 7.70 -10.98 -0.08 7.64 16 8 O -0.53 -10.73 15.39 5.56 0.09 -10.64 16 9 C -0.13 -1.44 3.98 -27.88 -0.11 -1.55 16 10 C 0.07 0.79 4.25 -3.82 -0.02 0.77 16 11 N -0.55 -5.39 5.02 -251.26 -1.26 -6.66 16 12 C 0.03 0.21 9.57 60.07 0.57 0.79 16 13 C 0.02 0.15 9.40 60.06 0.56 0.71 16 14 C 0.12 2.04 5.08 -3.48 -0.02 2.02 16 15 C -0.10 -1.67 2.16 -90.28 -0.19 -1.87 16 16 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.16 3.25 5.18 -4.04 -0.02 3.23 16 18 N -0.73 -19.17 5.38 -59.91 -0.32 -19.49 16 19 C -0.24 -6.92 9.99 -15.05 -0.15 -7.07 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -29.27 13.06 55.49 0.72 -28.54 16 23 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H 0.06 0.65 4.96 -51.93 -0.26 0.39 16 28 H 0.06 0.80 6.57 -51.93 -0.34 0.45 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 33 H 0.07 0.61 6.69 -51.93 -0.35 0.27 16 34 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16 35 H 0.09 0.77 6.27 -51.93 -0.33 0.45 16 36 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.08 1.11 8.02 -51.93 -0.42 0.69 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.49 6.30 -51.93 -0.33 0.16 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 1.10 6.69 -51.92 -0.35 0.75 16 45 H 0.10 2.20 6.23 -51.93 -0.32 1.88 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 48 H 0.38 10.80 6.92 -40.82 -0.28 10.52 16 49 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -33.99 370.59 -9.03 -43.02 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -8.64 Total: 6.67 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 0.33 Total: 1.07 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -1.37 Total: -63.71 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.99 -9.03 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133090224.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.144 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds