Wall clock time and date at job start Fri Apr 10 2020 17:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47138 * 2 1 4 4 C 1.53003 * 109.46797 * 240.00497 * 2 1 3 5 5 C 1.53004 * 109.46911 * 173.72870 * 4 2 1 6 6 H 1.08999 * 109.46660 * 306.43124 * 5 4 2 7 7 C 1.52997 * 109.47226 * 186.43304 * 5 4 2 8 8 N 1.46499 * 109.47288 * 66.42732 * 5 4 2 9 9 C 1.36936 * 120.00154 * 203.88866 * 8 5 4 10 10 H 1.07999 * 119.99981 * 12.75932 * 9 8 5 11 11 C 1.38812 * 120.00168 * 192.76567 * 9 8 5 12 12 N 1.31613 * 120.00081 * 176.02964 * 11 9 8 13 13 Si 1.86795 * 119.99880 * 356.02967 * 11 9 8 14 14 H 1.48498 * 109.47198 * 93.78707 * 13 11 9 15 15 H 1.48502 * 109.47132 * 213.78821 * 13 11 9 16 16 H 1.48496 * 109.47343 * 333.78449 * 13 11 9 17 17 N 1.46497 * 109.46875 * 120.00701 * 2 1 3 18 18 C 1.34778 * 119.99702 * 283.68280 * 17 2 1 19 19 O 1.21280 * 120.00005 * 4.37318 * 18 17 2 20 20 C 1.50701 * 120.00213 * 184.37804 * 18 17 2 21 21 C 1.53002 * 115.55273 * 79.85873 * 20 18 17 22 22 N 1.46899 * 109.46903 * 53.96834 * 21 20 18 23 23 C 1.46898 * 110.99889 * 78.01379 * 22 21 20 24 24 C 1.46900 * 110.99975 * 201.97142 * 22 21 20 25 25 C 1.53006 * 117.49556 * 294.19472 * 20 18 17 26 26 C 1.53000 * 117.49920 * 225.53285 * 20 18 17 27 27 H 1.08998 * 109.47698 * 299.99739 * 1 2 3 28 28 H 1.09009 * 109.47341 * 59.99750 * 1 2 3 29 29 H 1.09006 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47567 * 53.72733 * 4 2 1 31 31 H 1.09005 * 109.47008 * 293.72294 * 4 2 1 32 32 H 1.09008 * 109.46387 * 299.99544 * 7 5 4 33 33 H 1.08995 * 109.47184 * 59.99657 * 7 5 4 34 34 H 1.08994 * 109.47033 * 179.97438 * 7 5 4 35 35 H 0.96997 * 119.99910 * 23.88714 * 8 5 4 36 36 H 0.97004 * 120.00203 * 179.97438 * 12 11 9 37 37 H 0.96995 * 120.00512 * 103.68705 * 17 2 1 38 38 H 1.08992 * 109.46954 * 173.96789 * 21 20 18 39 39 H 1.09001 * 109.46958 * 293.96984 * 21 20 18 40 40 H 1.09003 * 109.47192 * 59.84753 * 23 22 21 41 41 H 1.09004 * 109.46906 * 179.83894 * 23 22 21 42 42 H 1.08994 * 109.47328 * 299.84519 * 23 22 21 43 43 H 1.08994 * 109.47666 * 64.73393 * 24 22 21 44 44 H 1.08999 * 109.46917 * 184.74446 * 24 22 21 45 45 H 1.09005 * 109.46980 * 304.73802 * 24 22 21 46 46 H 1.09004 * 117.49493 * 359.97438 * 25 20 18 47 47 H 1.08997 * 117.49971 * 145.01953 * 25 20 18 48 48 H 1.08999 * 117.49874 * 214.97006 * 26 20 18 49 49 H 1.09004 * 117.49624 * 359.97438 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5618 -0.5861 -1.3306 6 1 3.8369 0.4668 -1.2698 7 6 4.0552 -1.1663 -2.6576 8 7 4.1770 -1.3165 -0.2196 9 6 5.4268 -0.9696 0.2193 10 1 5.8742 -0.0412 -0.1038 11 6 6.1189 -1.8112 1.0793 12 7 7.3501 -1.5165 1.4392 13 14 5.3027 -3.3619 1.7260 14 1 5.6541 -4.5084 0.8500 15 1 5.7760 -3.6312 3.1075 16 1 3.8291 -3.1791 1.7345 17 7 2.0183 -0.6907 1.1961 18 6 1.9825 -0.0724 2.3931 19 8 1.4740 1.0240 2.4943 20 6 2.5745 -0.7432 3.6058 21 6 4.0959 -0.6473 3.7362 22 7 4.5057 0.7615 3.6646 23 6 4.2595 1.4468 4.9404 24 6 5.9147 0.8804 3.2664 25 6 1.9022 -2.0246 4.1030 26 6 1.7522 -0.7237 4.8959 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.5879 -0.2762 -2.1357 31 1 1.7712 -1.7762 -1.1950 32 1 3.7801 -2.2193 -2.7184 33 1 3.5975 -0.6228 -3.4842 34 1 5.1393 -1.0696 -2.7157 35 1 3.6989 -2.0457 0.2052 36 1 7.8336 -2.1044 2.0405 37 1 2.3673 -1.5930 1.1266 38 1 4.4057 -1.0676 4.6930 39 1 4.5659 -1.2041 2.9255 40 1 4.8256 0.9557 5.7319 41 1 4.5744 2.4873 4.8606 42 1 3.1960 1.4060 5.1755 43 1 6.0388 0.5016 2.2520 44 1 6.2154 1.9275 3.3027 45 1 6.5354 0.3003 3.9493 46 1 1.0315 -2.3820 3.5531 47 1 2.5438 -2.7990 4.5234 48 1 2.2952 -0.6431 5.8376 49 1 0.7832 -0.2253 4.8676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135299352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:19 Heat of formation + Delta-G solvation = 11.627908 kcal Electronic energy + Delta-G solvation = -27434.370380 eV Core-core repulsion = 24012.076959 eV Total energy + Delta-G solvation = -3422.293421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.84169 -37.71051 -36.58067 -35.21593 -34.18367 -32.27356 -30.74310 -29.07238 -27.48127 -26.76392 -26.37709 -23.54206 -23.31883 -22.29440 -21.45202 -20.51313 -20.29714 -18.78175 -17.57776 -16.50172 -15.99298 -15.21473 -14.83557 -14.64433 -14.55738 -14.24364 -13.91160 -13.69650 -13.38626 -13.30446 -12.89380 -12.65584 -12.44151 -12.05496 -11.99525 -11.86716 -11.79556 -11.69853 -11.56266 -11.48093 -11.31722 -11.08174 -10.88672 -10.76909 -10.62712 -10.48960 -10.30703 -10.07263 -9.95937 -9.67352 -9.62493 -9.08452 -8.90535 -8.40239 -7.65456 -7.23778 -5.82425 -3.15950 3.16818 3.25692 3.27380 3.35146 3.67121 3.91883 4.47063 4.54724 4.94314 5.03282 5.10993 5.15039 5.27480 5.38269 5.47941 5.51212 5.60270 5.70794 5.72238 5.79724 5.84191 5.91488 5.94662 5.95521 6.01380 6.05451 6.08985 6.18973 6.20521 6.29704 6.31526 6.34739 6.40500 6.44909 6.47258 6.52923 6.55880 6.83572 7.02130 7.14598 7.26244 7.67951 7.81136 8.00214 8.17149 8.36031 8.91734 9.14887 9.86848 10.09639 11.34407 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.009585 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.181305 B = 2920.632401 C = 4204.980307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.081 0.919 4 C -0.136 4.136 5 C 0.176 3.824 6 H 0.056 0.944 7 C -0.163 4.163 8 N -0.741 5.741 9 C -0.221 4.221 10 H 0.090 0.910 11 C 0.010 3.990 12 N -0.925 5.925 13 Si 0.863 3.137 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.279 1.279 17 N -0.705 5.705 18 C 0.576 3.424 19 O -0.544 6.544 20 C -0.135 4.135 21 C 0.093 3.907 22 N -0.528 5.528 23 C 0.026 3.974 24 C 0.022 3.978 25 C -0.173 4.173 26 C -0.150 4.150 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.353 0.647 36 H 0.257 0.743 37 H 0.397 0.603 38 H 0.031 0.969 39 H 0.104 0.896 40 H 0.013 0.987 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.049 0.951 45 H 0.014 0.986 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 -0.170 1.626 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.099 0.901 4 C -0.175 4.175 5 C 0.067 3.933 6 H 0.074 0.926 7 C -0.223 4.223 8 N -0.387 5.387 9 C -0.352 4.352 10 H 0.107 0.893 11 C -0.185 4.185 12 N -0.574 5.574 13 Si 0.695 3.305 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.206 1.206 17 N -0.358 5.358 18 C 0.361 3.639 19 O -0.421 6.421 20 C -0.139 4.139 21 C -0.036 4.036 22 N -0.251 5.251 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.211 4.211 26 C -0.188 4.188 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.187 0.813 36 H 0.067 0.933 37 H 0.234 0.766 38 H 0.050 0.950 39 H 0.122 0.878 40 H 0.031 0.969 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.136 0.864 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.262 0.967 1.333 11.381 hybrid contribution 0.345 -2.124 1.261 2.494 sum -10.916 -1.157 2.594 11.280 Atomic orbital electron populations 1.22207 0.96324 1.01412 1.02225 1.20800 0.92598 0.97465 0.84298 0.90106 1.22234 0.97811 1.00505 0.96902 1.20263 0.89190 0.96280 0.87571 0.92574 1.22379 1.02072 1.00080 0.97810 1.42887 1.18495 1.40106 1.37182 1.19003 0.90120 1.03599 1.22447 0.89254 1.24591 0.95502 0.96994 1.01422 1.69670 1.09563 1.38914 1.39236 0.86984 0.78748 0.86059 0.78701 1.21593 1.21787 1.20575 1.46085 1.64015 1.19037 1.06640 1.18950 0.77119 0.84748 0.83047 1.90592 1.45594 1.20310 1.85598 1.21487 0.95992 1.01401 0.95044 1.21698 0.90053 0.90443 1.01369 1.61757 1.21696 1.12418 1.29191 1.22434 1.01124 0.98670 0.90062 1.22621 0.85320 0.99872 1.04711 1.23101 1.02688 0.91319 1.03963 1.22972 1.01544 0.99786 0.94469 0.91935 0.92199 0.93141 0.90391 0.91947 0.93834 0.94351 0.92263 0.81283 0.93256 0.76575 0.95042 0.87755 0.96874 0.92125 0.91580 0.86377 0.93245 0.96695 0.88449 0.88377 0.88497 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.34 37.16 0.35 -1.85 16 2 C 0.15 2.40 2.50 -67.93 -0.17 2.23 16 3 H 0.08 1.45 7.91 -51.93 -0.41 1.04 16 4 C -0.14 -1.93 4.40 -26.73 -0.12 -2.05 16 5 C 0.18 3.08 2.88 -67.93 -0.20 2.89 16 6 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 7 C -0.16 -2.67 9.48 37.16 0.35 -2.32 16 8 N -0.74 -15.37 3.68 -53.43 -0.20 -15.57 16 9 C -0.22 -5.47 9.32 -15.06 -0.14 -5.61 16 10 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 11 C 0.01 0.26 3.86 -17.43 -0.07 0.19 16 12 N -0.93 -25.65 13.37 55.49 0.74 -24.91 16 13 Si 0.86 19.97 25.22 -169.99 -4.29 15.68 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 16 H -0.28 -5.77 5.86 56.52 0.33 -5.44 16 17 N -0.70 -12.32 4.19 -53.81 -0.23 -12.55 16 18 C 0.58 10.96 6.50 -10.98 -0.07 10.89 16 19 O -0.54 -11.64 16.02 5.56 0.09 -11.55 16 20 C -0.14 -2.37 1.83 -155.66 -0.28 -2.66 16 21 C 0.09 1.81 4.92 -3.82 -0.02 1.79 16 22 N -0.53 -10.51 4.60 -251.27 -1.16 -11.67 16 23 C 0.03 0.43 9.36 60.06 0.56 1.00 16 24 C 0.02 0.46 9.50 60.06 0.57 1.03 16 25 C -0.17 -2.50 9.96 -26.69 -0.27 -2.77 16 26 C -0.15 -2.18 8.61 -26.69 -0.23 -2.41 16 27 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 28 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.35 7.20 3.55 -40.82 -0.14 7.05 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.40 7.04 5.59 -40.82 -0.23 6.81 16 38 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 39 H 0.10 2.29 3.48 -51.93 -0.18 2.11 16 40 H 0.01 0.20 8.07 -51.93 -0.42 -0.22 16 41 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 42 H 0.07 1.08 6.61 -51.93 -0.34 0.74 16 43 H 0.12 2.89 5.46 -51.93 -0.28 2.60 16 44 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 45 H 0.01 0.31 8.13 -51.93 -0.42 -0.11 16 46 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.10 1.28 8.08 -51.93 -0.42 0.86 16 49 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -27.92 373.62 -7.88 -35.81 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -8.75 Total: 18.77 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 0.27 Total: 0.35 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -0.84 Total: -64.69 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.29 Total: 15.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.92 -7.88 -35.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135299352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.434 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds