Wall clock time and date at job start Fri Apr 10 2020 17:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47293 * 2 1 4 4 C 1.50705 * 109.46816 * 119.99721 * 2 1 3 5 5 O 1.20835 * 119.99586 * 120.00081 * 4 2 1 6 6 O 1.34229 * 120.00157 * 299.99966 * 4 2 1 7 7 C 1.45199 * 116.99830 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.46805 * 180.02562 * 7 6 4 9 9 O 1.21283 * 120.00149 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 179.97438 * 8 7 6 11 11 C 1.37094 * 120.00223 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99823 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00080 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99930 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47146 * 59.99591 * 15 13 11 17 17 H 1.48496 * 109.47171 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47058 * 299.99556 * 15 13 11 19 19 N 1.46497 * 109.47149 * 239.99679 * 2 1 3 20 20 C 1.33879 * 122.76265 * 120.00307 * 19 2 1 21 21 O 1.21233 * 125.39135 * 359.97435 * 20 19 2 22 22 C 1.51312 * 109.20866 * 180.24223 * 20 19 2 23 23 C 1.54228 * 103.55616 * 359.63118 * 22 20 19 24 24 C 1.33875 * 122.76728 * 299.99965 * 19 2 1 25 25 O 1.21230 * 125.39221 * 0.02562 * 24 19 2 26 26 H 1.09006 * 109.47300 * 60.00256 * 1 2 3 27 27 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47428 * 300.00275 * 1 2 3 29 29 H 1.08996 * 109.47379 * 299.99993 * 7 6 4 30 30 H 1.09001 * 109.46627 * 60.00292 * 7 6 4 31 31 H 0.97005 * 119.99493 * 0.02562 * 10 8 7 32 32 H 0.96998 * 120.00082 * 180.02562 * 14 13 11 33 33 H 1.09004 * 110.60416 * 118.27645 * 22 20 19 34 34 H 1.08993 * 110.60499 * 241.24048 * 22 20 19 35 35 H 1.08994 * 110.80706 * 241.73088 * 23 22 20 36 36 H 1.08998 * 110.53952 * 118.82350 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7269 -1.6928 1.1197 6 8 1.7080 -0.2517 2.4497 7 6 2.2266 -0.9863 3.5897 8 6 1.7617 -0.3297 4.8640 9 8 1.0617 0.6596 4.8160 10 7 2.1228 -0.8424 6.0569 11 6 1.6995 -0.2455 7.2162 12 1 1.0768 0.6360 7.1735 13 6 2.0723 -0.7738 8.4461 14 7 2.8303 -1.8460 8.4981 15 14 1.4960 0.0401 10.0256 16 1 0.0116 0.0393 10.0699 17 1 2.0259 -0.7115 11.1916 18 1 1.9919 1.4391 10.0711 19 7 2.0183 -0.6907 -1.1961 20 6 2.7906 -0.0941 -2.1126 21 8 3.1703 1.0564 -2.0694 22 6 3.1088 -1.0813 -3.2143 23 6 2.3867 -2.3683 -2.7661 24 6 1.7292 -1.9703 -1.4627 25 8 1.0480 -2.6953 -0.7698 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8624 -2.0131 3.5567 30 1 3.3161 -0.9860 3.5569 31 1 2.6824 -1.6339 6.0952 32 1 3.0902 -2.2150 9.3566 33 1 2.7156 -0.7310 -4.1687 34 1 4.1836 -1.2498 -3.2797 35 1 3.1001 -3.1764 -2.6048 36 1 1.6364 -2.6614 -3.5004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322589483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:12 Heat of formation + Delta-G solvation = -176.959516 kcal Electronic energy + Delta-G solvation = -23966.373495 eV Core-core repulsion = 20030.684364 eV Total energy + Delta-G solvation = -3935.689131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.40529 -40.24721 -38.84156 -38.15405 -36.34687 -36.02891 -34.71477 -34.01006 -31.40095 -30.84038 -28.40337 -26.53293 -25.33270 -24.44282 -22.79316 -21.76982 -19.63745 -19.46104 -18.10488 -17.96937 -17.61603 -17.08752 -16.73698 -16.30061 -16.03904 -15.46346 -14.98635 -14.56635 -14.51372 -14.38952 -14.19300 -14.07996 -13.90925 -13.37426 -13.23732 -12.86255 -12.56289 -12.34845 -12.11262 -11.93309 -11.76442 -11.62423 -11.11633 -10.83534 -10.74205 -10.49160 -10.47151 -10.30379 -10.27252 -10.03277 -9.60192 -8.53893 -8.09051 -6.50283 -3.92500 1.23617 1.84785 2.15248 2.34190 2.78587 3.15363 3.22768 3.27419 3.69427 3.72636 3.83423 4.02804 4.09055 4.40445 4.44466 4.59595 4.70461 4.86110 5.01922 5.04062 5.14405 5.16648 5.20758 5.36470 5.50809 5.58218 5.67312 5.89763 6.03082 6.46684 6.50569 7.00039 7.42828 7.47229 7.71575 7.93521 8.47557 9.06256 9.38287 9.88053 10.66869 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.036281 B = 0.002897 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.564595 B = 9663.222415 C = 9859.690513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.144 0.856 4 C 0.454 3.546 5 O -0.499 6.499 6 O -0.318 6.318 7 C 0.062 3.938 8 C 0.439 3.561 9 O -0.575 6.575 10 N -0.551 5.551 11 C -0.303 4.303 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 N -0.564 5.564 20 C 0.529 3.471 21 O -0.481 6.481 22 C -0.153 4.153 23 C -0.154 4.154 24 C 0.530 3.470 25 O -0.463 6.463 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.395 0.605 32 H 0.275 0.725 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 -1.680 -23.873 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.161 0.839 4 C 0.295 3.705 5 O -0.387 6.387 6 O -0.231 6.231 7 C -0.016 4.016 8 C 0.223 3.777 9 O -0.459 6.459 10 N -0.189 5.189 11 C -0.432 4.432 12 H 0.124 0.876 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.762 3.238 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.197 1.197 19 N -0.309 5.309 20 C 0.319 3.681 21 O -0.353 6.353 22 C -0.192 4.192 23 C -0.194 4.194 24 C 0.318 3.682 25 O -0.332 6.332 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.229 0.771 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.055 -1.194 -23.282 23.313 hybrid contribution 0.355 -0.338 1.006 1.119 sum 0.300 -1.533 -22.276 22.330 Atomic orbital electron populations 1.22141 0.89848 1.05035 1.04950 1.20755 0.97829 0.97765 0.80083 0.83863 1.23459 0.78142 0.83184 0.85731 1.90668 1.35481 1.25256 1.87302 1.86507 1.68645 1.54423 1.13552 1.22805 0.99554 0.95738 0.83480 1.19262 0.86904 0.87669 0.83840 1.90558 1.41355 1.27463 1.86570 1.41690 1.45688 1.27596 1.03885 1.19685 1.29929 1.11502 0.82130 0.87622 1.25319 0.96513 0.96207 0.99675 1.69606 1.35466 1.21372 1.27314 0.85849 0.79123 0.79015 0.79851 1.19727 1.20857 1.19729 1.46667 1.47677 1.14710 1.21827 1.20903 0.75796 0.88049 0.83373 1.90805 1.50926 1.16809 1.76711 1.22455 1.04758 0.93256 0.98758 1.22456 1.02137 0.99449 0.95338 1.20784 0.79492 0.80265 0.87616 1.90793 1.35435 1.54170 1.52832 0.90558 0.90246 0.88357 0.89364 0.89504 0.77148 0.91547 0.85914 0.85929 0.85936 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.10 37.16 0.34 -1.45 16 2 C 0.14 1.78 3.22 -69.08 -0.22 1.55 16 3 H 0.14 1.68 7.41 -51.93 -0.38 1.30 16 4 C 0.45 7.58 6.89 36.01 0.25 7.83 16 5 O -0.50 -9.15 14.55 -24.50 -0.36 -9.51 16 6 O -0.32 -6.06 9.66 -45.90 -0.44 -6.50 16 7 C 0.06 1.21 5.94 36.01 0.21 1.43 16 8 C 0.44 10.72 7.86 -10.98 -0.09 10.64 16 9 O -0.58 -16.07 16.08 -14.11 -0.23 -16.29 16 10 N -0.55 -14.12 5.29 -10.96 -0.06 -14.17 16 11 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 12 H 0.11 3.05 7.16 -52.48 -0.38 2.68 16 13 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 14 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 15 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 N -0.56 -6.23 2.28 -109.49 -0.25 -6.48 16 20 C 0.53 5.04 8.08 -11.09 -0.09 4.95 16 21 O -0.48 -6.09 17.23 5.60 0.10 -5.99 16 22 C -0.15 -0.67 7.03 -26.94 -0.19 -0.86 16 23 C -0.15 -0.77 7.03 -26.94 -0.19 -0.96 16 24 C 0.53 5.70 6.70 -11.09 -0.07 5.62 16 25 O -0.46 -6.79 15.13 -10.64 -0.16 -6.95 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.98 6.64 -51.93 -0.34 0.63 16 28 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 29 H 0.09 1.62 8.13 -51.93 -0.42 1.20 16 30 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 31 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -36.36 323.68 -5.05 -41.41 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -3.94 Total: 6.56 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: -0.29 Total: 20.75 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.42 Total: -44.17 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.09 Total: -45.24 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.36 -5.05 -41.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322589483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.547 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds