Wall clock time and date at job start Fri Apr 10 2020 17:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47293 * 2 1 4 4 C 1.50705 * 109.46816 * 119.99721 * 2 1 3 5 5 O 1.20835 * 119.99586 * 120.00081 * 4 2 1 6 6 O 1.34229 * 120.00157 * 299.99966 * 4 2 1 7 7 C 1.45199 * 116.99830 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.46805 * 180.02562 * 7 6 4 9 9 O 1.21283 * 120.00149 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 179.97438 * 8 7 6 11 11 C 1.37094 * 120.00223 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99823 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00080 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99930 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47146 * 59.99591 * 15 13 11 17 17 H 1.48496 * 109.47171 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47058 * 299.99556 * 15 13 11 19 19 N 1.46497 * 109.47149 * 239.99679 * 2 1 3 20 20 C 1.33879 * 122.76265 * 120.00307 * 19 2 1 21 21 O 1.21233 * 125.39135 * 359.97435 * 20 19 2 22 22 C 1.51312 * 109.20866 * 180.24223 * 20 19 2 23 23 C 1.54228 * 103.55616 * 359.63118 * 22 20 19 24 24 C 1.33875 * 122.76728 * 299.99965 * 19 2 1 25 25 O 1.21230 * 125.39221 * 0.02562 * 24 19 2 26 26 H 1.09006 * 109.47300 * 60.00256 * 1 2 3 27 27 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47428 * 300.00275 * 1 2 3 29 29 H 1.08996 * 109.47379 * 299.99993 * 7 6 4 30 30 H 1.09001 * 109.46627 * 60.00292 * 7 6 4 31 31 H 0.97005 * 119.99493 * 0.02562 * 10 8 7 32 32 H 0.96998 * 120.00082 * 180.02562 * 14 13 11 33 33 H 1.09004 * 110.60416 * 118.27645 * 22 20 19 34 34 H 1.08993 * 110.60499 * 241.24048 * 22 20 19 35 35 H 1.08994 * 110.80706 * 241.73088 * 23 22 20 36 36 H 1.08998 * 110.53952 * 118.82350 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7269 -1.6928 1.1197 6 8 1.7080 -0.2517 2.4497 7 6 2.2266 -0.9863 3.5897 8 6 1.7617 -0.3297 4.8640 9 8 1.0617 0.6596 4.8160 10 7 2.1228 -0.8424 6.0569 11 6 1.6995 -0.2455 7.2162 12 1 1.0768 0.6360 7.1735 13 6 2.0723 -0.7738 8.4461 14 7 2.8303 -1.8460 8.4981 15 14 1.4960 0.0401 10.0256 16 1 0.0116 0.0393 10.0699 17 1 2.0259 -0.7115 11.1916 18 1 1.9919 1.4391 10.0711 19 7 2.0183 -0.6907 -1.1961 20 6 2.7906 -0.0941 -2.1126 21 8 3.1703 1.0564 -2.0694 22 6 3.1088 -1.0813 -3.2143 23 6 2.3867 -2.3683 -2.7661 24 6 1.7292 -1.9703 -1.4627 25 8 1.0480 -2.6953 -0.7698 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8624 -2.0131 3.5567 30 1 3.3161 -0.9860 3.5569 31 1 2.6824 -1.6339 6.0952 32 1 3.0902 -2.2150 9.3566 33 1 2.7156 -0.7310 -4.1687 34 1 4.1836 -1.2498 -3.2797 35 1 3.1001 -3.1764 -2.6048 36 1 1.6364 -2.6614 -3.5004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322589483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:12 Heat of formation + Delta-G solvation = -202.719631 kcal Electronic energy + Delta-G solvation = -23967.490538 eV Core-core repulsion = 20030.684364 eV Total energy + Delta-G solvation = -3936.806174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.23886 -41.61245 -40.10088 -39.68084 -37.74678 -37.01103 -36.08398 -35.50273 -33.46535 -31.64008 -30.06018 -27.12776 -26.88701 -25.93405 -23.52207 -22.87228 -21.51486 -20.45702 -20.12495 -19.12387 -18.68982 -18.03190 -17.91071 -17.63365 -17.44245 -16.92566 -16.40632 -15.93133 -15.90967 -15.67119 -15.31651 -14.95093 -14.84319 -14.70563 -14.27337 -13.94247 -13.91088 -13.58509 -13.48953 -13.35602 -13.04835 -12.95594 -12.52199 -12.14471 -12.08925 -12.01492 -11.94042 -11.61855 -11.60817 -11.08646 -11.06962 -10.57598 -10.16257 -8.55532 -6.06813 0.49615 0.79728 0.85295 1.35073 1.40788 1.48974 1.53904 1.77854 1.81717 2.26828 2.86119 3.09477 3.17264 3.24560 3.41251 3.61670 3.63204 3.74911 3.88739 4.04076 4.04934 4.14036 4.20407 4.51458 4.63124 4.77354 4.91707 4.94164 4.97324 5.08191 5.33491 5.71709 5.84112 6.27946 6.30015 6.44834 6.68126 6.98373 7.34239 7.87294 8.61330 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.036281 B = 0.002897 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.564595 B = 9663.222415 C = 9859.690513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.151 0.849 4 C 0.452 3.548 5 O -0.517 6.517 6 O -0.334 6.334 7 C 0.072 3.928 8 C 0.437 3.563 9 O -0.615 6.615 10 N -0.556 5.556 11 C -0.341 4.341 12 H 0.086 0.914 13 C -0.008 4.008 14 N -0.915 5.915 15 Si 1.000 3.000 16 H -0.269 1.269 17 H -0.269 1.269 18 H -0.269 1.269 19 N -0.570 5.570 20 C 0.523 3.477 21 O -0.519 6.519 22 C -0.135 4.135 23 C -0.139 4.139 24 C 0.517 3.483 25 O -0.512 6.512 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.400 0.600 32 H 0.282 0.718 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -2.220 -25.681 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.168 0.832 4 C 0.294 3.706 5 O -0.406 6.406 6 O -0.248 6.248 7 C -0.005 4.005 8 C 0.223 3.777 9 O -0.502 6.502 10 N -0.193 5.193 11 C -0.470 4.470 12 H 0.104 0.896 13 C -0.209 4.209 14 N -0.555 5.555 15 Si 0.822 3.178 16 H -0.194 1.194 17 H -0.193 1.193 18 H -0.194 1.194 19 N -0.315 5.315 20 C 0.316 3.684 21 O -0.393 6.393 22 C -0.173 4.173 23 C -0.178 4.178 24 C 0.309 3.691 25 O -0.385 6.385 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.234 0.766 32 H 0.091 0.909 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.533 -1.764 -25.129 25.197 hybrid contribution 0.204 -0.184 1.523 1.548 sum 0.737 -1.948 -23.606 23.698 Atomic orbital electron populations 1.22082 0.88680 1.04351 1.05926 1.20840 0.98717 0.97797 0.79354 0.83168 1.24291 0.77515 0.83113 0.85694 1.90641 1.36384 1.26157 1.87382 1.86512 1.69167 1.54837 1.14302 1.22555 1.00470 0.95588 0.81873 1.19968 0.85755 0.87018 0.84950 1.90522 1.42993 1.29264 1.87398 1.41727 1.45800 1.27714 1.04035 1.19717 1.31497 1.12065 0.83675 0.89617 1.26163 0.95982 0.96495 1.02261 1.69668 1.35411 1.21872 1.28546 0.84895 0.78702 0.78203 0.75991 1.19415 1.19290 1.19389 1.46998 1.48022 1.15265 1.21202 1.21906 0.74420 0.88262 0.83860 1.90790 1.52164 1.18705 1.77596 1.22616 1.06153 0.90768 0.97794 1.22604 1.02748 1.00040 0.92376 1.21910 0.78598 0.79543 0.89015 1.90768 1.37724 1.55160 1.54848 0.87692 0.91648 0.89262 0.87930 0.87575 0.76599 0.90866 0.82350 0.83722 0.84347 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.10 71.98 0.66 -2.74 16 2 C 0.14 3.51 3.22 44.25 0.14 3.65 16 3 H 0.15 3.58 7.41 -2.39 -0.02 3.56 16 4 C 0.45 15.31 6.89 71.24 0.49 15.80 16 5 O -0.52 -19.06 14.55 27.43 0.40 -18.67 16 6 O -0.33 -13.04 9.66 -45.05 -0.44 -13.47 16 7 C 0.07 2.89 5.94 71.24 0.42 3.31 16 8 C 0.44 21.96 7.86 87.66 0.69 22.65 16 9 O -0.62 -35.57 16.08 15.76 0.25 -35.32 16 10 N -0.56 -29.15 5.29 -306.99 -1.62 -30.77 16 11 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 12 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 13 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 14 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 15 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 19 N -0.57 -11.97 2.28 -738.14 -1.68 -13.65 16 20 C 0.52 8.92 8.08 87.99 0.71 9.63 16 21 O -0.52 -12.57 17.23 -2.88 -0.05 -12.61 16 22 C -0.13 -0.60 7.03 30.46 0.21 -0.39 16 23 C -0.14 -0.85 7.03 30.46 0.21 -0.64 16 24 C 0.52 10.39 6.70 87.99 0.59 10.98 16 25 O -0.51 -14.97 15.13 12.66 0.19 -14.78 16 26 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.06 1.65 6.64 -2.39 -0.02 1.64 16 28 H 0.09 2.13 8.11 -2.39 -0.02 2.11 16 29 H 0.10 3.79 8.13 -2.39 -0.02 3.77 16 30 H 0.11 3.81 8.13 -2.39 -0.02 3.79 16 31 H 0.40 19.82 7.90 -92.70 -0.73 19.08 16 32 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.16 -0.30 8.14 -2.38 -0.02 -0.32 16 34 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.14 0.53 8.14 -2.39 -0.02 0.52 16 36 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -81.85 323.68 5.18 -76.66 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.41 Total: 23.38 kcal Atomic # 6 Polarization: 38.31 SS G_CDS: 5.41 Total: 43.72 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -3.02 Total: -93.31 kcal Atomic # 8 Polarization: -95.21 SS G_CDS: 0.36 Total: -94.85 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -81.85 5.18 -76.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322589483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.058 kcal (2) G-P(sol) polarization free energy of solvation -81.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds