Wall clock time and date at job start Fri Apr 10 2020 17:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00233 * 2 1 4 4 H 1.48503 * 109.47362 * 270.00210 * 3 2 1 5 5 H 1.48504 * 109.46872 * 29.99994 * 3 2 1 6 6 H 1.48499 * 109.47348 * 149.99980 * 3 2 1 7 7 C 1.37883 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99850 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.76853 * 303.19904 * 9 7 2 11 11 C 1.55398 * 110.84773 * 66.46355 * 9 7 2 12 12 C 1.54916 * 101.74107 * 153.86113 * 11 9 7 13 13 N 1.47843 * 104.79337 * 323.02060 * 12 11 9 14 14 C 1.46904 * 110.99640 * 146.36598 * 13 12 11 15 15 C 1.50701 * 109.47311 * 69.15748 * 14 13 12 16 16 O 1.21284 * 119.99717 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00217 * 180.02562 * 15 14 13 18 18 C 1.39065 * 120.00205 * 179.97438 * 17 15 14 19 19 N 1.29893 * 125.65363 * 0.02562 * 18 17 15 20 20 N 1.26248 * 117.66442 * 179.97438 * 19 18 17 21 21 C 1.29528 * 116.57610 * 0.02562 * 20 19 18 22 22 S 1.71312 * 125.65498 * 179.71803 * 18 17 15 23 23 C 1.47439 * 108.57210 * 24.09642 * 13 12 11 24 24 H 0.97004 * 120.00131 * 0.02562 * 1 2 3 25 25 H 0.96704 * 113.99505 * 56.79624 * 10 9 7 26 26 H 1.08995 * 110.87020 * 35.77769 * 11 9 7 27 27 H 1.08997 * 111.05714 * 272.03001 * 11 9 7 28 28 H 1.08996 * 110.37177 * 204.18825 * 12 11 9 29 29 H 1.09002 * 110.37261 * 81.84838 * 12 11 9 30 30 H 1.09006 * 109.46849 * 189.15426 * 14 13 12 31 31 H 1.08995 * 109.46868 * 309.15239 * 14 13 12 32 32 H 0.97002 * 119.99546 * 359.97438 * 17 15 14 33 33 H 1.08001 * 126.14385 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.88998 * 118.41597 * 23 13 12 35 35 H 1.09003 * 109.88733 * 239.44258 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 8 0.3636 -2.5729 1.1160 11 6 0.4727 -2.6872 -1.3336 12 6 0.3766 -4.2305 -1.4273 13 7 1.6659 -4.7220 -0.8965 14 6 1.4919 -5.9972 -0.1884 15 6 1.1525 -7.0802 -1.1799 16 8 1.0639 -6.8156 -2.3602 17 7 0.9465 -8.3425 -0.7550 18 6 0.6329 -9.3417 -1.6699 19 7 0.5114 -9.1822 -2.9533 20 7 0.2217 -10.1976 -3.6453 21 6 0.0712 -11.3126 -3.0035 22 16 0.3499 -10.9886 -1.2921 23 6 2.2282 -3.6935 -0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2714 -1.8449 1.1627 26 1 1.0356 -2.2794 -2.1731 27 1 -0.5183 -2.2371 -1.2750 28 1 0.2503 -4.5405 -2.4646 29 1 -0.4493 -4.5970 -0.8175 30 1 2.4162 -6.2548 0.3288 31 1 0.6839 -5.9026 0.5371 32 1 1.0170 -8.5540 0.1891 33 1 -0.1763 -12.2696 -3.4386 34 1 2.3259 -4.0930 1.0073 35 1 3.2033 -3.3746 -0.3706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326330879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:50 Heat of formation + Delta-G solvation = -18.604832 kcal Electronic energy + Delta-G solvation = -21699.489948 eV Core-core repulsion = 18245.713214 eV Total energy + Delta-G solvation = -3453.776735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36826 -41.08868 -39.71945 -36.63088 -36.17525 -34.11105 -32.45974 -31.41505 -29.93632 -28.56585 -27.03230 -25.84716 -23.64198 -22.11378 -21.32625 -20.93712 -20.43136 -19.15055 -18.60527 -17.98111 -17.27658 -16.91651 -16.89529 -16.27752 -15.86669 -15.82019 -15.51357 -14.90972 -14.82107 -14.30019 -14.07154 -13.78100 -13.44552 -13.19833 -13.02314 -12.76395 -12.57339 -12.37472 -12.32064 -12.14925 -11.89067 -11.67260 -11.38847 -11.18488 -10.76881 -10.65909 -10.62548 -10.08877 -9.93630 -9.28513 -8.22062 -6.36200 -0.52342 -0.40416 0.21081 1.32815 1.41609 1.43820 1.53058 1.64237 1.81218 2.39346 2.99450 3.03721 3.26545 3.73095 3.85182 3.99983 4.13473 4.30434 4.32630 4.41568 4.45665 4.53157 4.64967 4.81621 4.92618 5.11981 5.25467 5.47161 5.51736 5.79973 5.87073 5.88839 6.15473 6.18052 6.68534 6.92793 7.34309 7.42992 7.66969 8.83591 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.049806 B = 0.002925 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.040953 B = 9570.430266 C = 9713.118745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.060 0.940 9 C 0.223 3.777 10 O -0.594 6.594 11 C -0.127 4.127 12 C 0.062 3.938 13 N -0.524 5.524 14 C 0.040 3.960 15 C 0.510 3.490 16 O -0.497 6.497 17 N -0.616 5.616 18 C 0.209 3.791 19 N -0.335 5.335 20 N -0.278 5.278 21 C -0.014 4.014 22 S 0.196 5.804 23 C 0.069 3.931 24 H 0.269 0.731 25 H 0.378 0.622 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.446 0.554 33 H 0.262 0.738 34 H 0.067 0.933 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 -23.669 3.840 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.594 4.594 8 H 0.078 0.922 9 C 0.183 3.817 10 O -0.404 6.404 11 C -0.166 4.166 12 C -0.066 4.066 13 N -0.248 5.248 14 C -0.092 4.092 15 C 0.294 3.706 16 O -0.365 6.365 17 N -0.272 5.272 18 C -0.162 4.162 19 N -0.180 5.180 20 N -0.112 5.112 21 C -0.317 4.317 22 S 0.434 5.566 23 C -0.058 4.058 24 H 0.078 0.922 25 H 0.229 0.771 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.159 0.841 31 H 0.106 0.894 32 H 0.288 0.712 33 H 0.278 0.722 34 H 0.086 0.914 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.633 -23.685 2.458 23.821 hybrid contribution -0.670 1.798 0.584 2.006 sum -0.037 -21.887 3.042 22.098 Atomic orbital electron populations 1.69671 1.06912 1.28183 1.50871 1.25719 0.95825 1.02421 0.93370 0.85511 0.78771 0.78994 0.78042 1.20528 1.20643 1.19304 1.21890 0.93741 0.91942 1.51796 0.92174 1.19942 0.86581 0.92648 0.82512 1.86024 1.51402 1.52951 1.50005 1.23063 1.00295 0.93278 0.99939 1.22863 0.89496 0.95145 0.99086 1.63357 1.24821 1.02417 1.34208 1.22283 1.05276 0.88124 0.93503 1.21483 0.75915 0.82845 0.90308 1.90839 1.45598 1.80856 1.19216 1.42983 1.68478 1.05517 1.10270 1.26419 1.01623 0.95694 0.92424 1.71498 1.20672 1.23505 1.02364 1.71370 1.13830 0.95852 1.30135 1.32044 1.04130 1.03823 0.91658 1.84418 1.64971 0.97133 1.10093 1.22724 0.97806 0.90398 0.94914 0.92155 0.77119 0.93615 0.92865 0.91945 0.94509 0.84088 0.89392 0.71201 0.72231 0.91426 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.30 10.72 21.45 0.23 -49.07 16 2 C 0.03 1.40 5.29 84.66 0.45 1.85 16 3 Si 0.96 42.33 29.54 68.60 2.03 44.36 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.56 -29.63 8.22 25.60 0.21 -29.42 16 8 H 0.06 3.16 7.53 -2.91 -0.02 3.14 16 9 C 0.22 10.97 0.86 -10.27 -0.01 10.96 16 10 O -0.59 -29.95 13.09 -148.98 -1.95 -31.90 16 11 C -0.13 -6.18 5.68 32.07 0.18 -6.00 16 12 C 0.06 2.62 5.74 86.78 0.50 3.11 16 13 N -0.52 -19.95 4.86 -890.07 -4.33 -24.28 16 14 C 0.04 1.08 5.05 85.56 0.43 1.51 16 15 C 0.51 14.96 7.59 87.66 0.67 15.63 16 16 O -0.50 -20.22 13.72 -3.04 -0.04 -20.26 16 17 N -0.62 -12.45 5.41 -313.17 -1.69 -14.15 16 18 C 0.21 4.82 8.14 179.11 1.46 6.28 16 19 N -0.34 -10.82 9.74 -59.10 -0.58 -11.39 16 20 N -0.28 -7.53 11.65 -57.36 -0.67 -8.20 16 21 C -0.01 -0.20 12.69 130.58 1.66 1.46 16 22 S 0.20 2.24 23.31 -56.49 -1.32 0.93 16 23 C 0.07 2.81 6.21 86.65 0.54 3.35 16 24 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 25 H 0.38 19.98 6.99 -74.05 -0.52 19.47 16 26 H 0.05 2.35 8.04 -2.39 -0.02 2.33 16 27 H 0.05 2.75 7.78 -2.39 -0.02 2.73 16 28 H 0.06 2.79 7.38 -2.39 -0.02 2.78 16 29 H 0.04 1.51 7.62 -2.39 -0.02 1.49 16 30 H 0.14 2.78 8.03 -2.38 -0.02 2.76 16 31 H 0.09 2.17 7.85 -2.39 -0.02 2.15 16 32 H 0.45 4.34 8.82 -92.71 -0.82 3.52 16 33 H 0.26 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.07 2.49 7.47 -2.39 -0.02 2.47 16 35 H 0.08 3.35 7.63 -2.39 -0.02 3.33 16 Total: -1.00 -76.50 310.33 -2.42 -78.92 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.18 Total: 26.32 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.08 Total: 8.74 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -7.04 Total: -107.10 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -1.99 Total: -52.16 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.32 Total: 0.93 kcal Total: -76.50 -2.42 -78.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326330879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.313 kcal (2) G-P(sol) polarization free energy of solvation -76.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds