Wall clock time and date at job start Fri Apr 10 2020 17:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48499 * 109.47027 * 269.99886 * 3 2 1 5 5 H 1.48495 * 109.47458 * 30.00153 * 3 2 1 6 6 H 1.48500 * 109.46942 * 149.99931 * 3 2 1 7 7 C 1.37872 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00209 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00002 * 180.02562 * 7 2 1 10 10 O 1.42896 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99934 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47087 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47178 * 65.00376 * 12 11 10 14 14 C 1.34232 * 116.99974 * 180.02562 * 13 12 11 15 15 O 1.20823 * 120.00087 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99916 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47347 * 179.97438 * 16 14 13 18 18 C 1.36157 * 119.85706 * 269.97683 * 17 16 14 19 19 C 1.35538 * 119.26510 * 179.97438 * 18 17 16 20 20 C 1.40741 * 118.99821 * 0.05103 * 19 18 17 21 21 O 1.35154 * 120.16611 * 180.24861 * 20 19 18 22 22 N 1.32434 * 119.66600 * 359.97081 * 20 19 18 23 23 C 1.33264 * 120.73152 * 0.02562 * 22 20 19 24 24 O 1.21976 * 119.47840 * 180.02562 * 23 22 20 25 25 H 0.97003 * 119.99982 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46870 * 59.99840 * 9 7 2 27 27 H 1.08997 * 109.46904 * 299.99688 * 9 7 2 28 28 H 1.08997 * 109.47010 * 60.00312 * 11 10 9 29 29 H 1.08997 * 109.47291 * 299.99785 * 11 10 9 30 30 H 1.09004 * 109.47112 * 305.00301 * 12 11 10 31 31 H 1.08999 * 109.47032 * 185.00030 * 12 11 10 32 32 H 1.09005 * 109.47514 * 59.99372 * 16 14 13 33 33 H 1.09007 * 109.47272 * 299.99635 * 16 14 13 34 34 H 1.08004 * 120.36751 * 359.97438 * 18 17 16 35 35 H 1.08001 * 120.50377 * 180.02562 * 19 18 17 36 36 H 0.96699 * 114.00080 * 179.72466 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 8 3.9878 -2.5414 -0.0001 11 6 5.4123 -2.6543 -0.0001 12 6 5.8068 -4.1326 -0.0009 13 8 5.3727 -4.7487 -1.2419 14 6 5.6435 -6.0537 -1.4018 15 8 6.2244 -6.6609 -0.5336 16 6 5.2229 -6.7614 -2.6640 17 7 5.6314 -8.1666 -2.5953 18 6 6.8541 -8.5406 -3.0633 19 6 7.2200 -9.8438 -2.9934 20 6 6.3229 -10.7756 -2.4386 21 8 6.6654 -12.0801 -2.3527 22 7 5.1435 -10.3666 -1.9961 23 6 4.7961 -9.0822 -2.0707 24 8 3.7043 -8.7306 -1.6558 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 5.8151 -2.1709 0.8899 29 1 5.8151 -2.1708 -0.8901 30 1 5.3309 -4.6361 0.8407 31 1 6.8896 -4.2197 0.0886 32 1 5.6982 -6.2867 -3.5224 33 1 4.1396 -6.7024 -2.7699 34 1 7.5249 -7.8070 -3.4856 35 1 8.1852 -10.1625 -3.3583 36 1 5.9854 -12.6399 -1.9537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343901685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:34 Heat of formation + Delta-G solvation = -147.072904 kcal Electronic energy + Delta-G solvation = -23166.835651 eV Core-core repulsion = 19232.442501 eV Total energy + Delta-G solvation = -3934.393150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23382 -40.46766 -39.05036 -37.40031 -37.00972 -36.29013 -34.94404 -32.72516 -31.78558 -30.63258 -28.85338 -27.54895 -25.27938 -23.96305 -22.67653 -21.91531 -21.30910 -20.14250 -18.55883 -18.27883 -17.83310 -17.03499 -16.78880 -16.66031 -16.01633 -15.88457 -15.54041 -15.11929 -14.87595 -14.60410 -14.40306 -14.31287 -13.80653 -13.55410 -13.48786 -12.73033 -12.58698 -12.48537 -12.30470 -11.80207 -11.25454 -11.11596 -10.98876 -10.83067 -10.71198 -10.63233 -10.42611 -10.19956 -9.90232 -9.23211 -9.02951 -8.94979 -8.54119 -6.13379 -4.13172 0.22891 1.31971 1.73898 1.93632 2.57798 2.77347 3.21948 3.28799 3.29677 3.47725 3.80381 4.02812 4.27344 4.32238 4.36049 4.45362 4.58961 4.83655 4.90398 5.00723 5.01074 5.17125 5.29048 5.58285 5.61149 5.70033 5.84605 5.92094 6.31365 6.50589 6.63408 6.92586 7.40956 7.51863 7.54457 7.83514 7.91426 8.60518 8.98592 9.44712 10.99613 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.002558 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.755877 B =10942.380149 C =11413.311247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.375 6.375 11 C 0.058 3.942 12 C 0.075 3.925 13 O -0.334 6.334 14 C 0.450 3.550 15 O -0.505 6.505 16 C 0.103 3.897 17 N -0.517 5.517 18 C 0.209 3.791 19 C -0.283 4.283 20 C 0.459 3.541 21 O -0.448 6.448 22 N -0.610 5.610 23 C 0.659 3.341 24 O -0.519 6.519 25 H 0.267 0.733 26 H 0.004 0.996 27 H 0.001 0.999 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.184 0.816 35 H 0.166 0.834 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.989 -17.820 -9.764 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.294 6.294 11 C -0.020 4.020 12 C 0.002 3.998 13 O -0.249 6.249 14 C 0.291 3.709 15 O -0.393 6.393 16 C -0.021 4.021 17 N -0.235 5.235 18 C 0.075 3.925 19 C -0.310 4.310 20 C 0.257 3.743 21 O -0.243 6.243 22 N -0.367 5.367 23 C 0.361 3.639 24 O -0.392 6.392 25 H 0.077 0.923 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.201 0.799 35 H 0.184 0.816 36 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 19.941 -18.033 -9.058 28.371 hybrid contribution 0.807 1.316 0.150 1.550 sum 20.748 -16.718 -8.908 28.094 Atomic orbital electron populations 1.69880 1.06061 1.27125 1.50099 1.24777 0.94823 0.98749 0.94638 0.86839 0.80291 0.83763 0.78755 1.19891 1.20741 1.19156 1.20883 0.88161 0.95440 1.51401 0.89861 1.20640 0.96389 0.79125 0.94468 1.87998 1.16472 1.29870 1.95079 1.22400 0.86355 0.92512 1.00749 1.23264 0.99132 0.93292 0.84108 1.86563 1.73358 1.23114 1.41859 1.23565 0.76490 0.81859 0.88947 1.90703 1.38782 1.66865 1.42944 1.21375 1.06944 0.78294 0.95490 1.46156 1.15628 1.10045 1.51664 1.22361 0.85292 0.96758 0.88122 1.20609 1.04286 0.90751 1.15323 1.20447 0.87489 0.84938 0.81402 1.84979 1.46847 1.15237 1.77203 1.69693 1.18943 1.15362 1.32705 1.17340 0.85259 0.81836 0.79491 1.91081 1.20512 1.78411 1.49215 0.92304 0.97828 0.98135 0.91617 0.92936 0.90094 0.90107 0.84165 0.83170 0.79855 0.81603 0.72462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -15.55 9.99 -34.44 -0.34 -15.89 16 8 H 0.08 2.75 8.06 -52.48 -0.42 2.32 16 9 C 0.17 4.23 4.76 36.01 0.17 4.40 16 10 O -0.37 -8.65 10.30 -38.80 -0.40 -9.05 16 11 C 0.06 0.94 6.33 37.16 0.24 1.18 16 12 C 0.08 1.10 5.84 37.16 0.22 1.31 16 13 O -0.33 -4.98 10.19 -42.03 -0.43 -5.40 16 14 C 0.45 5.98 8.02 36.00 0.29 6.26 16 15 O -0.50 -7.99 16.18 -18.75 -0.30 -8.29 16 16 C 0.10 0.95 5.94 -5.20 -0.03 0.92 16 17 N -0.52 -5.20 2.08 -123.16 -0.26 -5.45 16 18 C 0.21 1.17 10.40 -16.60 -0.17 1.00 16 19 C -0.28 -1.64 10.03 -39.60 -0.40 -2.03 16 20 C 0.46 3.94 7.91 -16.35 -0.13 3.81 16 21 O -0.45 -2.65 13.55 -17.16 -0.23 -2.89 16 22 N -0.61 -7.83 10.40 -16.72 -0.17 -8.00 16 23 C 0.66 9.65 8.34 -88.43 -0.74 8.91 16 24 O -0.52 -9.95 16.72 4.94 0.08 -9.86 16 25 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 27 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.08 0.92 8.13 -51.93 -0.42 0.49 16 32 H 0.14 0.53 8.03 -51.93 -0.42 0.11 16 33 H 0.15 1.56 7.38 -51.93 -0.38 1.18 16 34 H 0.18 0.13 8.06 -52.48 -0.42 -0.29 16 35 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.42 1.16 8.98 45.56 0.41 1.57 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -41.82 328.83 -4.93 -46.75 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -3.28 Total: -4.23 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -1.00 Total: 11.89 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.34 Total: -40.34 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.28 Total: -35.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -41.82 -4.93 -46.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343901685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.321 kcal (2) G-P(sol) polarization free energy of solvation -41.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds