Wall clock time and date at job start Fri Apr 10 2020 17:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48499 * 109.47027 * 269.99886 * 3 2 1 5 5 H 1.48495 * 109.47458 * 30.00153 * 3 2 1 6 6 H 1.48500 * 109.46942 * 149.99931 * 3 2 1 7 7 C 1.37872 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00209 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00002 * 180.02562 * 7 2 1 10 10 O 1.42896 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99934 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47087 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47178 * 65.00376 * 12 11 10 14 14 C 1.34232 * 116.99974 * 180.02562 * 13 12 11 15 15 O 1.20823 * 120.00087 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99916 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47347 * 179.97438 * 16 14 13 18 18 C 1.36157 * 119.85706 * 269.97683 * 17 16 14 19 19 C 1.35538 * 119.26510 * 179.97438 * 18 17 16 20 20 C 1.40741 * 118.99821 * 0.05103 * 19 18 17 21 21 O 1.35154 * 120.16611 * 180.24861 * 20 19 18 22 22 N 1.32434 * 119.66600 * 359.97081 * 20 19 18 23 23 C 1.33264 * 120.73152 * 0.02562 * 22 20 19 24 24 O 1.21976 * 119.47840 * 180.02562 * 23 22 20 25 25 H 0.97003 * 119.99982 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46870 * 59.99840 * 9 7 2 27 27 H 1.08997 * 109.46904 * 299.99688 * 9 7 2 28 28 H 1.08997 * 109.47010 * 60.00312 * 11 10 9 29 29 H 1.08997 * 109.47291 * 299.99785 * 11 10 9 30 30 H 1.09004 * 109.47112 * 305.00301 * 12 11 10 31 31 H 1.08999 * 109.47032 * 185.00030 * 12 11 10 32 32 H 1.09005 * 109.47514 * 59.99372 * 16 14 13 33 33 H 1.09007 * 109.47272 * 299.99635 * 16 14 13 34 34 H 1.08004 * 120.36751 * 359.97438 * 18 17 16 35 35 H 1.08001 * 120.50377 * 180.02562 * 19 18 17 36 36 H 0.96699 * 114.00080 * 179.72466 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 8 3.9878 -2.5414 -0.0001 11 6 5.4123 -2.6543 -0.0001 12 6 5.8068 -4.1326 -0.0009 13 8 5.3727 -4.7487 -1.2419 14 6 5.6435 -6.0537 -1.4018 15 8 6.2244 -6.6609 -0.5336 16 6 5.2229 -6.7614 -2.6640 17 7 5.6314 -8.1666 -2.5953 18 6 6.8541 -8.5406 -3.0633 19 6 7.2200 -9.8438 -2.9934 20 6 6.3229 -10.7756 -2.4386 21 8 6.6654 -12.0801 -2.3527 22 7 5.1435 -10.3666 -1.9961 23 6 4.7961 -9.0822 -2.0707 24 8 3.7043 -8.7306 -1.6558 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 5.8151 -2.1709 0.8899 29 1 5.8151 -2.1708 -0.8901 30 1 5.3309 -4.6361 0.8407 31 1 6.8896 -4.2197 0.0886 32 1 5.6982 -6.2867 -3.5224 33 1 4.1396 -6.7024 -2.7699 34 1 7.5249 -7.8070 -3.4856 35 1 8.1852 -10.1625 -3.3583 36 1 5.9854 -12.6399 -1.9537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343901685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:33 Heat of formation + Delta-G solvation = -184.796777 kcal Electronic energy + Delta-G solvation = -23168.471481 eV Core-core repulsion = 19232.442501 eV Total energy + Delta-G solvation = -3936.028980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.02424 -41.50110 -39.73679 -38.86032 -38.01405 -37.50991 -35.70087 -34.90074 -32.52763 -31.94935 -30.02867 -29.20685 -25.90963 -24.85254 -24.07052 -23.70727 -22.34746 -20.82269 -19.28363 -19.19343 -19.11882 -18.57736 -18.02734 -17.69156 -17.18190 -16.85737 -16.83303 -16.45529 -16.21872 -15.63637 -15.28947 -14.95146 -14.89199 -14.70852 -14.51009 -14.36472 -13.98962 -13.51485 -13.36118 -13.13686 -13.00340 -12.65150 -12.34107 -12.11328 -11.89840 -11.83617 -11.77688 -11.36826 -11.26514 -11.02736 -10.93575 -10.41494 -9.77919 -8.37238 -6.46591 -0.37510 0.63150 0.89448 1.00445 1.34251 1.38792 1.49372 1.68904 2.23570 2.30246 2.64510 2.94023 2.95566 3.23208 3.40087 3.60762 3.73911 3.88596 4.05132 4.09203 4.16279 4.33435 4.39621 4.47539 4.52680 4.58089 4.68882 4.99896 5.14060 5.25437 5.27296 5.42210 5.90472 6.12088 6.45365 6.58063 6.60468 6.71106 6.98026 7.17874 8.80386 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.002558 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.755877 B =10942.380149 C =11413.311247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.240 1.240 7 C -0.551 4.551 8 H 0.023 0.977 9 C 0.180 3.820 10 O -0.411 6.411 11 C 0.049 3.951 12 C 0.075 3.925 13 O -0.348 6.348 14 C 0.450 3.550 15 O -0.535 6.535 16 C 0.107 3.893 17 N -0.518 5.518 18 C 0.214 3.786 19 C -0.278 4.278 20 C 0.457 3.543 21 O -0.439 6.439 22 N -0.657 5.657 23 C 0.648 3.352 24 O -0.593 6.593 25 H 0.273 0.727 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.207 0.793 33 H 0.132 0.868 34 H 0.245 0.755 35 H 0.207 0.793 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.537 -16.313 -11.442 32.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.163 1.163 7 C -0.589 4.589 8 H 0.041 0.959 9 C 0.104 3.896 10 O -0.331 6.331 11 C -0.027 4.027 12 C 0.002 3.998 13 O -0.264 6.264 14 C 0.293 3.707 15 O -0.425 6.425 16 C -0.016 4.016 17 N -0.235 5.235 18 C 0.082 3.918 19 C -0.303 4.303 20 C 0.258 3.742 21 O -0.235 6.235 22 N -0.417 5.417 23 C 0.350 3.650 24 O -0.472 6.472 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.223 0.777 33 H 0.150 0.850 34 H 0.261 0.739 35 H 0.224 0.776 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 24.583 -16.596 -10.771 31.556 hybrid contribution -0.546 0.615 0.651 1.049 sum 24.037 -15.981 -10.120 30.587 Atomic orbital electron populations 1.70060 1.08527 1.28884 1.50975 1.25962 0.95869 1.03792 0.93305 0.85512 0.79451 0.76780 0.79967 1.18039 1.20134 1.16280 1.21207 0.91339 0.93681 1.52665 0.95887 1.20357 0.93016 0.80557 0.95660 1.87940 1.20951 1.28828 1.95417 1.22792 0.82706 0.94184 1.03021 1.23296 1.01078 0.92003 0.83444 1.86560 1.73771 1.24181 1.41840 1.24323 0.75470 0.81136 0.89776 1.90683 1.40455 1.67126 1.44244 1.21668 1.06591 0.77859 0.95506 1.46018 1.16729 1.09582 1.51164 1.23407 0.83756 0.98150 0.86477 1.21157 1.05013 0.90208 1.13930 1.20924 0.86774 0.86128 0.80357 1.84984 1.47162 1.14470 1.76874 1.69516 1.21686 1.15165 1.35297 1.17550 0.85131 0.82902 0.79420 1.91010 1.23607 1.79686 1.52903 0.91784 0.96394 0.96217 0.89145 0.90618 0.92492 0.86203 0.77657 0.85026 0.73934 0.77603 0.71042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 2 C 0.01 0.50 5.47 84.65 0.46 0.96 16 3 Si 0.96 42.65 27.47 68.60 1.88 44.54 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 7 C -0.55 -34.05 9.99 25.60 0.26 -33.79 16 8 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 9 C 0.18 8.83 4.76 71.24 0.34 9.17 16 10 O -0.41 -19.01 10.30 -145.57 -1.50 -20.51 16 11 C 0.05 1.51 6.33 71.98 0.46 1.97 16 12 C 0.08 2.09 5.84 71.98 0.42 2.51 16 13 O -0.35 -10.07 10.19 -48.79 -0.50 -10.56 16 14 C 0.45 11.57 8.02 71.23 0.57 12.14 16 15 O -0.54 -16.70 16.18 21.97 0.36 -16.35 16 16 C 0.11 1.82 5.94 85.63 0.51 2.33 16 17 N -0.52 -9.77 2.08 -661.77 -1.38 -11.15 16 18 C 0.21 1.56 10.40 83.40 0.87 2.43 16 19 C -0.28 -2.22 10.03 22.26 0.22 -2.00 16 20 C 0.46 7.28 7.91 85.21 0.67 7.96 16 21 O -0.44 -4.56 13.55 -84.32 -1.14 -5.70 16 22 N -0.66 -17.51 10.40 -438.81 -4.56 -22.07 16 23 C 0.65 19.87 8.34 179.58 1.50 21.37 16 24 O -0.59 -24.82 16.72 -5.24 -0.09 -24.91 16 25 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 26 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 27 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 31 H 0.12 2.37 8.13 -2.39 -0.02 2.36 16 32 H 0.21 0.62 8.03 -2.38 -0.02 0.60 16 33 H 0.13 2.86 7.38 -2.38 -0.02 2.84 16 34 H 0.24 -1.30 8.06 -2.91 -0.02 -1.32 16 35 H 0.21 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.43 2.17 8.98 -74.06 -0.66 1.51 16 Total: -1.00 -101.28 328.83 0.06 -101.23 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: 0.41 Total: 0.51 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 6.28 Total: 25.04 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -5.64 Total: -93.29 kcal Atomic # 8 Polarization: -75.16 SS G_CDS: -2.87 Total: -78.03 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.54 kcal Total: -101.28 0.06 -101.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343901685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.572 kcal (2) G-P(sol) polarization free energy of solvation -101.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds