Wall clock time and date at job start Fri Apr 10 2020 17:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 120.00047 * 2 1 4 4 H 1.48493 * 109.47044 * 89.99615 * 3 2 1 5 5 H 1.48501 * 109.47033 * 209.99672 * 3 2 1 6 6 H 1.48506 * 109.46890 * 329.99912 * 3 2 1 7 7 C 1.39942 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99762 * 158.88638 * 7 2 1 9 9 C 1.41393 * 120.00227 * 338.88101 * 7 2 1 10 10 C 1.40736 * 120.24511 * 332.42188 * 9 7 2 11 11 C 1.37597 * 119.74773 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24436 * 0.02562 * 11 10 9 13 13 C 1.38607 * 120.50663 * 0.02562 * 12 11 10 14 14 C 1.37647 * 120.24336 * 359.66751 * 13 12 11 15 15 S 1.76205 * 120.12680 * 180.31819 * 14 13 12 16 16 O 1.42093 * 106.40556 * 224.89703 * 15 14 13 17 17 O 1.42100 * 106.40185 * 357.81808 * 15 14 13 18 18 N 1.65603 * 107.21616 * 111.35620 * 15 14 13 19 19 C 1.46497 * 120.00114 * 66.71710 * 18 15 14 20 20 C 1.52992 * 109.47126 * 163.11661 * 19 18 15 21 21 C 1.50700 * 109.47214 * 180.02562 * 20 19 18 22 22 N 1.34781 * 120.00416 * 179.97438 * 21 20 19 23 23 O 1.21283 * 119.99829 * 359.97438 * 21 20 19 24 24 H 0.96998 * 119.99949 * 175.07109 * 1 2 3 25 25 H 1.07999 * 120.12530 * 359.97240 * 10 9 7 26 26 H 1.07995 * 119.88031 * 180.02562 * 11 10 9 27 27 H 1.08009 * 119.74554 * 179.97438 * 12 11 10 28 28 H 1.07997 * 119.88086 * 179.97438 * 13 12 11 29 29 H 0.97002 * 119.99665 * 246.71875 * 18 15 14 30 30 H 1.09003 * 109.47025 * 283.11506 * 19 18 15 31 31 H 1.09001 * 109.46891 * 43.11139 * 19 18 15 32 32 H 1.09003 * 109.47042 * 299.99835 * 20 19 18 33 33 H 1.09001 * 109.47661 * 59.99950 * 20 19 18 34 34 H 0.96999 * 119.99296 * 0.02562 * 22 21 20 35 35 H 0.97002 * 120.00205 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 1.4000 5 1 3.5399 1.4401 -0.7000 6 1 1.4397 2.6527 -0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0336 -1.2435 -0.3364 9 6 1.3722 -2.3951 0.4423 10 6 0.3272 -2.3297 1.3826 11 6 -0.2840 -3.4876 1.8058 12 6 0.1266 -4.7156 1.3097 13 6 1.1555 -4.7921 0.3840 14 6 1.7769 -3.6463 -0.0582 15 16 3.0788 -3.7465 -1.2412 16 8 4.1074 -2.8813 -0.7803 17 8 3.2830 -5.1293 -1.4970 18 7 2.5115 -3.0889 -2.6513 19 6 2.2038 -1.6583 -2.7206 20 6 2.1112 -1.2270 -4.1856 21 6 1.7953 0.2448 -4.2569 22 7 1.6661 0.8491 -5.4547 23 8 1.6572 0.8855 -3.2364 24 1 -0.4850 -0.8369 -0.0722 25 1 0.0067 -1.3744 1.7713 26 1 -1.0864 -3.4399 2.5270 27 1 -0.3585 -5.6195 1.6477 28 1 1.4674 -5.7539 0.0046 29 1 2.3830 -3.6511 -3.4313 30 1 1.2522 -1.4669 -2.2247 31 1 2.9924 -1.0926 -2.2243 32 1 3.0628 -1.4184 -4.6815 33 1 1.3226 -1.7927 -4.6818 34 1 1.7761 0.3365 -6.2708 35 1 1.4623 1.7964 -5.5006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462836210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:44 Heat of formation + Delta-G solvation = -104.291326 kcal Electronic energy + Delta-G solvation = -23044.228032 eV Core-core repulsion = 19554.442901 eV Total energy + Delta-G solvation = -3489.785131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.27440 -37.83202 -36.37444 -35.14367 -34.86951 -33.95975 -33.50271 -30.16684 -29.77264 -29.34612 -25.42067 -23.35601 -21.80319 -21.10617 -20.26515 -18.73123 -18.14459 -17.37684 -16.77430 -16.50876 -16.03484 -15.45555 -15.06530 -14.79708 -14.46223 -13.89670 -13.68400 -13.51680 -13.32703 -13.09260 -12.49795 -12.18787 -11.84238 -11.47186 -11.37756 -11.22004 -11.11890 -11.08283 -10.91518 -10.78496 -10.42552 -10.26335 -9.76697 -9.69596 -9.55741 -9.26782 -9.14714 -8.65326 -8.17566 -7.74398 -7.31564 -4.76838 1.51613 2.28950 2.74257 2.85509 3.26595 3.38216 3.50331 3.59564 4.05365 4.09972 4.45816 4.68733 4.98381 5.19763 5.24609 5.30695 5.54544 5.67188 5.96642 6.10642 6.18931 6.33941 6.46928 6.68288 6.78024 6.88908 6.96259 7.22838 7.36495 7.39731 7.43877 7.60028 7.66824 7.76269 7.90770 8.06763 8.44948 8.46267 8.66237 9.90666 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.008423 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.569966 B = 3323.287110 C = 4456.855215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.058 3.942 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.119 0.881 9 C 0.162 3.838 10 C -0.211 4.211 11 C -0.057 4.057 12 C -0.267 4.267 13 C 0.015 3.985 14 C -0.786 4.786 15 S 2.708 3.292 16 O -0.972 6.972 17 O -1.000 7.000 18 N -1.125 6.125 19 C 0.138 3.862 20 C -0.154 4.154 21 C 0.513 3.487 22 N -0.864 5.864 23 O -0.513 6.513 24 H 0.300 0.700 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.404 0.596 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.397 0.603 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 0.840 -10.832 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.168 4.168 3 Si 0.895 3.105 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.137 0.863 9 C 0.157 3.843 10 C -0.231 4.231 11 C -0.076 4.076 12 C -0.287 4.287 13 C -0.005 4.005 14 C -0.881 4.881 15 S 2.806 3.194 16 O -0.962 6.962 17 O -0.991 6.991 18 N -0.881 5.881 19 C 0.012 3.988 20 C -0.195 4.195 21 C 0.297 3.703 22 N -0.429 5.429 23 O -0.387 6.387 24 H 0.114 0.886 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.236 0.764 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.225 0.775 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.294 2.520 -9.749 10.152 hybrid contribution -0.903 -1.725 -0.581 2.031 sum 0.391 0.796 -10.330 10.368 Atomic orbital electron populations 1.70478 1.08334 1.34421 1.26141 1.27012 0.95319 1.04337 0.90134 0.83502 0.76273 0.73839 0.76852 1.20965 1.19468 1.19593 1.21708 1.02976 0.93201 1.36522 0.86302 1.17047 0.89242 0.90404 0.87646 1.21392 1.02392 0.97252 1.02028 1.20820 0.96818 0.93282 0.96713 1.20427 1.04319 0.96343 1.07608 1.20278 0.91904 0.95523 0.92838 1.29673 1.30848 0.99976 1.27611 1.00780 0.74410 0.71485 0.72769 1.93473 1.55437 1.66940 1.80400 1.93448 1.86532 1.33463 1.85619 1.55609 1.86182 1.16923 1.29360 1.21439 1.04564 0.79245 0.93586 1.21939 1.03798 0.93062 1.00730 1.20577 0.76246 0.90043 0.83471 1.43902 1.76554 1.14103 1.08311 1.90819 1.47824 1.66301 1.33749 0.88562 0.87020 0.88750 0.88657 0.87411 0.76435 0.89313 0.88883 0.88702 0.88789 0.77532 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.42 12.38 55.55 0.69 -18.73 16 2 C 0.06 1.42 4.61 -17.34 -0.08 1.34 16 3 Si 1.07 23.46 28.61 -169.99 -4.86 18.60 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.52 -13.05 4.83 -37.74 -0.18 -13.23 16 8 H 0.12 3.07 4.04 -52.48 -0.21 2.85 16 9 C 0.16 4.10 5.28 -106.83 -0.56 3.54 16 10 C -0.21 -5.19 7.83 -38.87 -0.30 -5.50 16 11 C -0.06 -1.29 10.02 -39.66 -0.40 -1.68 16 12 C -0.27 -5.86 10.05 -39.29 -0.39 -6.25 16 13 C 0.01 0.33 9.54 -39.66 -0.38 -0.05 16 14 C -0.79 -18.79 5.97 -38.87 -0.23 -19.02 16 15 S 2.71 58.66 5.44 -107.50 -0.58 58.07 16 16 O -0.97 -23.66 14.86 -57.17 -0.85 -24.51 16 17 O -1.00 -22.42 16.97 -57.17 -0.97 -23.39 16 18 N -1.12 -19.56 5.99 -10.62 -0.06 -19.63 16 19 C 0.14 2.50 3.74 -4.05 -0.02 2.48 16 20 C -0.15 -1.96 5.85 -27.89 -0.16 -2.12 16 21 C 0.51 7.27 8.10 -10.98 -0.09 7.18 16 22 N -0.86 -7.85 8.87 31.22 0.28 -7.57 16 23 O -0.51 -9.95 15.42 5.55 0.09 -9.86 16 24 H 0.30 7.61 6.35 -40.82 -0.26 7.35 16 25 H 0.11 2.78 6.47 -52.49 -0.34 2.44 16 26 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 28 H 0.11 2.26 7.33 -52.49 -0.38 1.88 16 29 H 0.40 5.52 8.67 -34.47 -0.30 5.22 16 30 H 0.09 1.86 6.44 -51.93 -0.33 1.53 16 31 H 0.09 1.91 6.03 -51.93 -0.31 1.60 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.40 2.17 8.83 -40.82 -0.36 1.81 16 35 H 0.40 3.35 8.93 -40.82 -0.36 2.98 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -32.82 301.16 -7.90 -40.72 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -3.35 Total: 15.06 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -2.80 Total: -33.31 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.90 Total: -45.93 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -1.73 Total: -57.76 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.86 Total: 18.60 kcal Atomic # 16 Polarization: 58.66 SS G_CDS: -0.58 Total: 58.07 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.82 -7.90 -40.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462836210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.573 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds