Wall clock time and date at job start Fri Apr 10 2020 17:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 120.00047 * 2 1 4 4 H 1.48493 * 109.47044 * 89.99615 * 3 2 1 5 5 H 1.48501 * 109.47033 * 209.99672 * 3 2 1 6 6 H 1.48506 * 109.46890 * 329.99912 * 3 2 1 7 7 C 1.39942 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99762 * 158.88638 * 7 2 1 9 9 C 1.41393 * 120.00227 * 338.88101 * 7 2 1 10 10 C 1.40736 * 120.24511 * 332.42188 * 9 7 2 11 11 C 1.37597 * 119.74773 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24436 * 0.02562 * 11 10 9 13 13 C 1.38607 * 120.50663 * 0.02562 * 12 11 10 14 14 C 1.37647 * 120.24336 * 359.66751 * 13 12 11 15 15 S 1.76205 * 120.12680 * 180.31819 * 14 13 12 16 16 O 1.42093 * 106.40556 * 224.89703 * 15 14 13 17 17 O 1.42100 * 106.40185 * 357.81808 * 15 14 13 18 18 N 1.65603 * 107.21616 * 111.35620 * 15 14 13 19 19 C 1.46497 * 120.00114 * 66.71710 * 18 15 14 20 20 C 1.52992 * 109.47126 * 163.11661 * 19 18 15 21 21 C 1.50700 * 109.47214 * 180.02562 * 20 19 18 22 22 N 1.34781 * 120.00416 * 179.97438 * 21 20 19 23 23 O 1.21283 * 119.99829 * 359.97438 * 21 20 19 24 24 H 0.96998 * 119.99949 * 175.07109 * 1 2 3 25 25 H 1.07999 * 120.12530 * 359.97240 * 10 9 7 26 26 H 1.07995 * 119.88031 * 180.02562 * 11 10 9 27 27 H 1.08009 * 119.74554 * 179.97438 * 12 11 10 28 28 H 1.07997 * 119.88086 * 179.97438 * 13 12 11 29 29 H 0.97002 * 119.99665 * 246.71875 * 18 15 14 30 30 H 1.09003 * 109.47025 * 283.11506 * 19 18 15 31 31 H 1.09001 * 109.46891 * 43.11139 * 19 18 15 32 32 H 1.09003 * 109.47042 * 299.99835 * 20 19 18 33 33 H 1.09001 * 109.47661 * 59.99950 * 20 19 18 34 34 H 0.96999 * 119.99296 * 0.02562 * 22 21 20 35 35 H 0.97002 * 120.00205 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 1.4000 5 1 3.5399 1.4401 -0.7000 6 1 1.4397 2.6527 -0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0336 -1.2435 -0.3364 9 6 1.3722 -2.3951 0.4423 10 6 0.3272 -2.3297 1.3826 11 6 -0.2840 -3.4876 1.8058 12 6 0.1266 -4.7156 1.3097 13 6 1.1555 -4.7921 0.3840 14 6 1.7769 -3.6463 -0.0582 15 16 3.0788 -3.7465 -1.2412 16 8 4.1074 -2.8813 -0.7803 17 8 3.2830 -5.1293 -1.4970 18 7 2.5115 -3.0889 -2.6513 19 6 2.2038 -1.6583 -2.7206 20 6 2.1112 -1.2270 -4.1856 21 6 1.7953 0.2448 -4.2569 22 7 1.6661 0.8491 -5.4547 23 8 1.6572 0.8855 -3.2364 24 1 -0.4850 -0.8369 -0.0722 25 1 0.0067 -1.3744 1.7713 26 1 -1.0864 -3.4399 2.5270 27 1 -0.3585 -5.6195 1.6477 28 1 1.4674 -5.7539 0.0046 29 1 2.3830 -3.6511 -3.4313 30 1 1.2522 -1.4669 -2.2247 31 1 2.9924 -1.0926 -2.2243 32 1 3.0628 -1.4184 -4.6815 33 1 1.3226 -1.7927 -4.6818 34 1 1.7761 0.3365 -6.2708 35 1 1.4623 1.7964 -5.5006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462836210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:43 Heat of formation + Delta-G solvation = -132.123452 kcal Electronic energy + Delta-G solvation = -23045.434924 eV Core-core repulsion = 19554.442901 eV Total energy + Delta-G solvation = -3490.992023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40348 -39.63797 -38.16032 -36.75132 -36.56763 -35.74479 -34.50434 -31.97877 -31.20417 -30.96423 -27.25419 -24.70109 -23.57824 -22.93846 -21.37875 -20.39780 -19.93768 -18.79177 -18.02838 -17.73814 -17.64149 -16.82397 -16.58732 -16.47892 -16.13670 -15.64362 -15.37214 -14.96912 -14.80966 -14.55206 -14.27752 -13.91551 -13.43036 -13.11982 -13.03993 -13.00334 -12.78165 -12.72800 -12.57029 -12.35503 -12.14963 -11.99733 -11.52779 -11.05567 -10.98384 -10.87866 -10.50863 -10.22359 -9.99011 -9.59269 -9.21100 -6.65505 -0.19262 0.45766 0.90491 1.47853 1.61881 1.75668 1.80867 2.27206 2.31425 2.62217 2.84449 2.93858 3.40753 3.71405 3.86357 4.24376 4.25321 4.33766 4.36198 4.64593 4.65786 4.75346 4.85427 5.05551 5.14490 5.33306 5.41025 5.53973 5.62949 5.81537 5.89812 6.03477 6.04649 6.21565 6.33556 6.60559 6.60900 6.80198 7.52832 8.00364 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.008423 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.569966 B = 3323.287110 C = 4456.855215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.043 3.957 3 Si 1.096 2.904 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.108 0.892 9 C 0.142 3.858 10 C -0.238 4.238 11 C -0.055 4.055 12 C -0.264 4.264 13 C 0.001 3.999 14 C -0.802 4.802 15 S 2.727 3.273 16 O -1.002 7.002 17 O -1.006 7.006 18 N -1.104 6.104 19 C 0.139 3.861 20 C -0.146 4.146 21 C 0.507 3.493 22 N -0.837 5.837 23 O -0.575 6.575 24 H 0.292 0.708 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.424 0.576 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.418 0.582 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -0.278 -12.453 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.179 4.179 3 Si 0.917 3.083 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.125 0.875 9 C 0.138 3.862 10 C -0.258 4.258 11 C -0.073 4.073 12 C -0.284 4.284 13 C -0.019 4.019 14 C -0.896 4.896 15 S 2.823 3.177 16 O -0.992 6.992 17 O -0.996 6.996 18 N -0.865 5.865 19 C 0.012 3.988 20 C -0.187 4.187 21 C 0.292 3.708 22 N -0.402 5.402 23 O -0.453 6.453 24 H 0.105 0.895 25 H 0.118 0.882 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.261 0.739 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.250 0.750 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.048 1.370 -11.422 11.551 hybrid contribution -0.855 -1.521 -0.152 1.751 sum 0.193 -0.151 -11.573 11.576 Atomic orbital electron populations 1.70527 1.08658 1.33774 1.28060 1.27604 0.95347 1.05734 0.89247 0.83218 0.75674 0.72075 0.77360 1.19564 1.19371 1.19934 1.21594 1.02547 0.93804 1.37919 0.87478 1.17312 0.89782 0.91102 0.88042 1.21427 1.03502 0.97766 1.03059 1.21187 0.96868 0.92724 0.96545 1.20875 1.03653 0.97420 1.06406 1.20645 0.92210 0.95941 0.93116 1.30100 1.31025 0.99939 1.28532 1.00110 0.73609 0.70979 0.72995 1.93437 1.56650 1.67705 1.81365 1.93430 1.86556 1.33852 1.85794 1.55097 1.85599 1.17068 1.28759 1.21194 1.01788 0.78744 0.97027 1.21899 1.06933 0.92593 0.97277 1.20841 0.75671 0.90493 0.83841 1.43636 1.74284 1.14540 1.07737 1.90801 1.50951 1.67531 1.36060 0.89477 0.88232 0.85744 0.85232 0.85553 0.73950 0.92500 0.91754 0.85268 0.85402 0.75012 0.76365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.99 12.38 21.83 0.27 -40.72 16 2 C 0.04 2.19 4.61 85.26 0.39 2.59 16 3 Si 1.10 48.70 28.61 68.60 1.96 50.66 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.53 -27.71 4.83 23.46 0.11 -27.59 16 8 H 0.11 5.76 4.04 -2.91 -0.01 5.75 16 9 C 0.14 7.36 5.28 -21.29 -0.11 7.25 16 10 C -0.24 -11.85 7.83 22.73 0.18 -11.67 16 11 C -0.05 -2.37 10.02 22.22 0.22 -2.15 16 12 C -0.26 -10.95 10.05 22.46 0.23 -10.72 16 13 C 0.00 0.03 9.54 22.22 0.21 0.24 16 14 C -0.80 -38.26 5.97 22.73 0.14 -38.13 16 15 S 2.73 116.93 5.44 -56.49 -0.31 116.62 16 16 O -1.00 -49.34 14.86 -128.00 -1.90 -51.24 16 17 O -1.01 -43.57 16.97 -128.00 -2.17 -45.74 16 18 N -1.10 -37.11 5.99 -187.50 -1.12 -38.23 16 19 C 0.14 5.01 3.74 86.38 0.32 5.34 16 20 C -0.15 -3.37 5.85 29.85 0.17 -3.20 16 21 C 0.51 13.68 8.10 87.66 0.71 14.39 16 22 N -0.84 -13.08 8.87 -173.53 -1.54 -14.62 16 23 O -0.57 -22.55 15.42 -3.04 -0.05 -22.60 16 24 H 0.29 15.37 6.35 -92.71 -0.59 14.78 16 25 H 0.10 5.12 6.47 -2.91 -0.02 5.10 16 26 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.13 5.01 7.33 -2.91 -0.02 4.99 16 29 H 0.42 10.52 8.67 -96.74 -0.84 9.68 16 30 H 0.06 2.45 6.44 -2.39 -0.02 2.43 16 31 H 0.06 2.71 6.03 -2.39 -0.01 2.70 16 32 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.42 3.04 8.83 -92.71 -0.82 2.22 16 35 H 0.41 5.96 8.93 -92.71 -0.83 5.13 16 Total: -1.00 -73.29 301.16 -3.40 -76.69 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -1.12 Total: 32.85 kcal Atomic # 6 Polarization: -66.24 SS G_CDS: 2.58 Total: -63.66 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -2.39 Total: -93.58 kcal Atomic # 8 Polarization: -115.46 SS G_CDS: -4.12 Total: -119.58 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.96 Total: 50.66 kcal Atomic # 16 Polarization: 116.93 SS G_CDS: -0.31 Total: 116.62 kcal Total: -73.29 -3.40 -76.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462836210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.430 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds