Wall clock time and date at job start Fri Apr 10 2020 17:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47382 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47129 * 120.00262 * 3 2 1 6 6 H 1.48502 * 109.46818 * 239.99662 * 3 2 1 7 7 C 1.40306 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99486 * 159.40825 * 7 2 1 9 9 C 1.40530 * 120.00450 * 339.41477 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.66954 * 9 7 2 11 11 C 1.32771 * 114.43306 * 180.02562 * 10 9 7 12 12 S 1.75467 * 111.35894 * 0.02562 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.37572 * 9 7 2 14 14 C 1.46245 * 125.22479 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99950 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99683 * 180.02562 * 14 13 9 17 17 N 1.40105 * 119.99419 * 179.97438 * 16 14 13 18 18 C 1.34783 * 119.99734 * 179.97438 * 17 16 14 19 19 O 1.21582 * 120.00021 * 179.97438 * 18 17 16 20 20 N 1.34780 * 119.99688 * 0.02562 * 18 17 16 21 21 C 1.46502 * 119.99736 * 179.97438 * 20 18 17 22 22 C 1.52993 * 109.47078 * 180.02562 * 21 20 18 23 23 N 1.46901 * 109.47197 * 179.97438 * 22 21 20 24 24 H 0.97007 * 120.00327 * 174.00676 * 1 2 3 25 25 H 1.08000 * 122.78562 * 359.97438 * 10 9 7 26 26 H 1.07996 * 124.32001 * 179.97438 * 11 10 9 27 27 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 28 28 H 0.96997 * 120.00401 * 0.02562 * 17 16 14 29 29 H 0.96996 * 120.00484 * 359.97438 * 20 18 17 30 30 H 1.09004 * 109.47019 * 300.00212 * 21 20 18 31 31 H 1.09001 * 109.46825 * 59.99892 * 21 20 18 32 32 H 1.08997 * 109.47187 * 299.99525 * 22 21 20 33 33 H 1.09001 * 109.47493 * 60.00163 * 22 21 20 34 34 H 1.00894 * 111.00521 * 179.97438 * 23 22 21 35 35 H 1.00901 * 111.00126 * 303.95886 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 1.2753 2.7465 -0.0006 5 1 3.0941 1.6964 1.2124 6 1 3.0941 1.6964 -1.2125 7 6 2.0079 -1.2151 0.0005 8 1 3.0362 -1.2451 -0.3284 9 6 1.3726 -2.3931 0.4290 10 6 0.2450 -2.4130 1.3274 11 6 -0.2103 -3.6276 1.6104 12 16 0.7200 -4.8668 0.7871 13 6 1.7597 -3.6722 0.0272 14 6 2.8639 -3.9721 -0.8836 15 8 3.5274 -3.0665 -1.3551 16 7 3.1465 -5.2509 -1.2018 17 7 4.2041 -5.5382 -2.0748 18 6 4.4870 -6.8170 -2.3926 19 8 5.4044 -7.0664 -3.1505 20 7 3.7523 -7.8194 -1.8711 21 6 4.0595 -9.2095 -2.2170 22 6 3.0835 -10.1419 -1.4968 23 7 3.3912 -11.5357 -1.8442 24 1 -0.4851 -0.8355 -0.0877 25 1 -0.1924 -1.5144 1.7368 26 1 -1.0460 -3.8275 2.2646 27 1 2.6178 -5.9723 -0.8265 28 1 4.7330 -4.8168 -2.4498 29 1 3.0202 -7.6205 -1.2667 30 1 3.9636 -9.3455 -3.2943 31 1 5.0791 -9.4432 -1.9107 32 1 3.1791 -10.0060 -0.4196 33 1 2.0640 -9.9080 -1.8036 34 1 2.7601 -12.1717 -1.3803 35 1 3.3723 -11.6718 -2.8438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580056170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:56 Heat of formation + Delta-G solvation = -12.798827 kcal Electronic energy + Delta-G solvation = -21153.804702 eV Core-core repulsion = 17700.279735 eV Total energy + Delta-G solvation = -3453.524967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14623 -38.40782 -36.70204 -36.21279 -34.93683 -33.41772 -33.21783 -30.72050 -28.97767 -27.63810 -25.83520 -22.85326 -22.62535 -21.14712 -20.80549 -19.34504 -19.06419 -17.67724 -16.97037 -16.49230 -16.11974 -15.77735 -15.31722 -14.75038 -14.50365 -14.29248 -14.11178 -13.97763 -13.84007 -13.69435 -13.21152 -12.57769 -12.28612 -12.11207 -11.74145 -11.66021 -11.23997 -10.92645 -10.73098 -10.53870 -10.40786 -10.27723 -9.93112 -9.34100 -9.25092 -9.13134 -8.87082 -8.03065 -7.80686 -7.52887 -7.49920 -4.80074 1.83079 2.33698 2.74516 2.95146 3.02678 3.05113 3.15923 3.24142 3.32887 3.51730 3.78839 4.16640 4.31972 4.58882 4.81700 4.90237 5.17622 5.20851 5.65440 5.67237 5.74072 5.98922 6.29256 6.44175 6.66214 6.77424 6.83121 6.87349 6.99873 7.05404 7.12471 7.55335 7.71149 7.92710 8.12544 8.24099 8.48569 8.57040 9.27934 9.58504 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.003786 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.467360 B = 7394.128947 C = 8585.117277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.028 3.972 3 Si 1.074 2.926 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.112 0.888 9 C 0.114 3.886 10 C -0.141 4.141 11 C -0.178 4.178 12 S -0.042 6.042 13 C -0.437 4.437 14 C 0.602 3.398 15 O -0.557 6.557 16 N -0.554 5.554 17 N -0.524 5.524 18 C 0.712 3.288 19 O -0.588 6.588 20 N -0.747 5.747 21 C 0.139 3.861 22 C 0.048 3.952 23 N -0.846 5.846 24 H 0.302 0.698 25 H 0.134 0.866 26 H 0.144 0.856 27 H 0.407 0.593 28 H 0.441 0.559 29 H 0.393 0.607 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.348 0.652 35 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 -11.668 1.050 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.197 4.197 3 Si 0.895 3.105 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.443 4.443 8 H 0.130 0.870 9 C 0.104 3.896 10 C -0.174 4.174 11 C -0.313 4.313 12 S 0.213 5.787 13 C -0.557 4.557 14 C 0.401 3.599 15 O -0.438 6.438 16 N -0.308 5.308 17 N -0.277 5.277 18 C 0.411 3.589 19 O -0.464 6.464 20 N -0.406 5.406 21 C 0.014 3.986 22 C -0.083 4.083 23 N -0.377 5.377 24 H 0.117 0.883 25 H 0.151 0.849 26 H 0.161 0.839 27 H 0.247 0.753 28 H 0.287 0.713 29 H 0.228 0.772 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.161 0.839 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.132 -11.138 0.555 11.153 hybrid contribution -1.467 -0.343 0.071 1.508 sum -1.334 -11.481 0.626 11.575 Atomic orbital electron populations 1.70453 1.08400 1.34714 1.25405 1.27640 0.95631 1.05426 0.91005 0.83493 0.75620 0.72494 0.78888 1.19491 1.19433 1.19238 1.21097 1.02096 0.91332 1.29728 0.87003 1.17834 0.89549 0.92110 0.90130 1.21588 0.98453 0.97081 1.00238 1.24924 1.04329 0.96309 1.05692 1.82648 1.31540 1.12676 1.51847 1.21956 1.14552 0.94800 1.24421 1.16892 0.83325 0.79319 0.80379 1.90698 1.52512 1.44256 1.56324 1.45101 1.29191 1.09161 1.47353 1.44284 1.30092 1.06596 1.46756 1.15599 0.82461 0.79706 0.81127 1.90984 1.33053 1.81365 1.40965 1.44970 1.37089 1.05899 1.52627 1.21089 0.99665 0.78302 0.99502 1.21941 0.96643 0.88651 1.01070 1.58520 1.60301 1.04308 1.14566 0.88342 0.84881 0.83853 0.75325 0.71326 0.77192 0.91658 0.90518 0.90094 0.94600 0.83927 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.19 12.48 55.57 0.69 -17.50 16 2 C 0.03 0.65 5.23 -17.28 -0.09 0.56 16 3 Si 1.07 20.12 29.98 -169.99 -5.10 15.02 16 4 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 7 C -0.41 -10.46 8.43 -37.94 -0.32 -10.78 16 8 H 0.11 3.00 6.15 -52.48 -0.32 2.68 16 9 C 0.11 2.80 5.41 -106.21 -0.57 2.23 16 10 C -0.14 -3.05 8.19 -39.12 -0.32 -3.37 16 11 C -0.18 -3.39 11.07 28.86 0.32 -3.07 16 12 S -0.04 -0.78 22.25 -107.50 -2.39 -3.18 16 13 C -0.44 -10.14 6.51 -35.88 -0.23 -10.37 16 14 C 0.60 13.84 7.88 -13.04 -0.10 13.73 16 15 O -0.56 -14.41 14.30 5.13 0.07 -14.34 16 16 N -0.55 -10.19 6.25 30.17 0.19 -10.01 16 17 N -0.52 -9.32 6.26 27.64 0.17 -9.15 16 18 C 0.71 11.98 8.68 -86.91 -0.75 11.23 16 19 O -0.59 -11.54 17.18 5.29 0.09 -11.45 16 20 N -0.75 -9.63 5.52 -65.22 -0.36 -9.99 16 21 C 0.14 1.52 5.93 -4.04 -0.02 1.50 16 22 C 0.05 0.39 6.90 -3.83 -0.03 0.36 16 23 N -0.85 -6.00 9.62 -10.37 -0.10 -6.10 16 24 H 0.30 7.23 6.22 -40.82 -0.25 6.98 16 25 H 0.13 2.84 6.78 -52.49 -0.36 2.49 16 26 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.41 6.43 5.78 -182.60 -1.06 5.37 16 28 H 0.44 8.21 8.10 -182.60 -1.48 6.74 16 29 H 0.39 4.46 6.39 -40.82 -0.26 4.20 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.35 1.84 9.08 -39.30 -0.36 1.48 16 35 H 0.34 2.08 8.99 -39.29 -0.35 1.73 16 LS Contribution 317.52 15.07 4.79 4.79 Total: -1.00 -29.62 317.52 -9.42 -39.04 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -5.35 Total: 20.83 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.13 Total: 2.02 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.60 Total: -52.74 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.16 Total: -25.79 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.10 Total: 15.02 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.39 Total: -3.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.62 -9.42 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.241 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds