Wall clock time and date at job start Fri Apr 10 2020 17:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47382 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47129 * 120.00262 * 3 2 1 6 6 H 1.48502 * 109.46818 * 239.99662 * 3 2 1 7 7 C 1.40306 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99486 * 159.40825 * 7 2 1 9 9 C 1.40530 * 120.00450 * 339.41477 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.66954 * 9 7 2 11 11 C 1.32771 * 114.43306 * 180.02562 * 10 9 7 12 12 S 1.75467 * 111.35894 * 0.02562 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.37572 * 9 7 2 14 14 C 1.46245 * 125.22479 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99950 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99683 * 180.02562 * 14 13 9 17 17 N 1.40105 * 119.99419 * 179.97438 * 16 14 13 18 18 C 1.34783 * 119.99734 * 179.97438 * 17 16 14 19 19 O 1.21582 * 120.00021 * 179.97438 * 18 17 16 20 20 N 1.34780 * 119.99688 * 0.02562 * 18 17 16 21 21 C 1.46502 * 119.99736 * 179.97438 * 20 18 17 22 22 C 1.52993 * 109.47078 * 180.02562 * 21 20 18 23 23 N 1.46901 * 109.47197 * 179.97438 * 22 21 20 24 24 H 0.97007 * 120.00327 * 174.00676 * 1 2 3 25 25 H 1.08000 * 122.78562 * 359.97438 * 10 9 7 26 26 H 1.07996 * 124.32001 * 179.97438 * 11 10 9 27 27 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 28 28 H 0.96997 * 120.00401 * 0.02562 * 17 16 14 29 29 H 0.96996 * 120.00484 * 359.97438 * 20 18 17 30 30 H 1.09004 * 109.47019 * 300.00212 * 21 20 18 31 31 H 1.09001 * 109.46825 * 59.99892 * 21 20 18 32 32 H 1.08997 * 109.47187 * 299.99525 * 22 21 20 33 33 H 1.09001 * 109.47493 * 60.00163 * 22 21 20 34 34 H 1.00894 * 111.00521 * 179.97438 * 23 22 21 35 35 H 1.00901 * 111.00126 * 303.95886 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 1.2753 2.7465 -0.0006 5 1 3.0941 1.6964 1.2124 6 1 3.0941 1.6964 -1.2125 7 6 2.0079 -1.2151 0.0005 8 1 3.0362 -1.2451 -0.3284 9 6 1.3726 -2.3931 0.4290 10 6 0.2450 -2.4130 1.3274 11 6 -0.2103 -3.6276 1.6104 12 16 0.7200 -4.8668 0.7871 13 6 1.7597 -3.6722 0.0272 14 6 2.8639 -3.9721 -0.8836 15 8 3.5274 -3.0665 -1.3551 16 7 3.1465 -5.2509 -1.2018 17 7 4.2041 -5.5382 -2.0748 18 6 4.4870 -6.8170 -2.3926 19 8 5.4044 -7.0664 -3.1505 20 7 3.7523 -7.8194 -1.8711 21 6 4.0595 -9.2095 -2.2170 22 6 3.0835 -10.1419 -1.4968 23 7 3.3912 -11.5357 -1.8442 24 1 -0.4851 -0.8355 -0.0877 25 1 -0.1924 -1.5144 1.7368 26 1 -1.0460 -3.8275 2.2646 27 1 2.6178 -5.9723 -0.8265 28 1 4.7330 -4.8168 -2.4498 29 1 3.0202 -7.6205 -1.2667 30 1 3.9636 -9.3455 -3.2943 31 1 5.0791 -9.4432 -1.9107 32 1 3.1791 -10.0060 -0.4196 33 1 2.0640 -9.9080 -1.8036 34 1 2.7601 -12.1717 -1.3803 35 1 3.3723 -11.6718 -2.8438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580056170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:56 Heat of formation + Delta-G solvation = -37.102622 kcal Electronic energy + Delta-G solvation = -21154.858594 eV Core-core repulsion = 17700.279735 eV Total energy + Delta-G solvation = -3454.578859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56940 -40.10117 -38.36819 -37.15042 -36.59108 -34.92894 -34.36881 -32.34110 -30.63749 -28.56722 -27.56569 -24.52918 -23.49356 -22.66579 -22.23778 -20.96759 -20.55076 -19.26453 -18.51719 -17.80897 -17.22671 -16.95008 -16.50246 -16.16603 -16.01217 -15.84562 -15.56128 -15.51109 -14.98714 -14.87366 -14.59988 -14.30511 -13.78873 -13.35845 -13.14907 -12.79464 -12.57431 -12.50774 -12.35080 -12.05458 -11.91076 -11.87275 -11.56270 -11.03857 -10.69135 -10.41988 -9.76858 -9.68753 -9.43979 -9.23055 -9.11061 -6.59647 0.13281 0.83243 1.18887 1.38207 1.48042 1.59745 1.72744 1.79990 1.85801 1.91110 2.24039 2.39924 3.09870 3.63273 3.74837 3.92442 4.10438 4.20165 4.42432 4.46098 4.78790 4.85429 4.86395 5.12499 5.21004 5.26324 5.31815 5.44821 5.54088 5.81620 5.87094 6.13313 6.35912 6.44976 6.54974 6.62522 6.73530 7.16582 7.56777 7.79370 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.003786 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.467360 B = 7394.128947 C = 8585.117277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.004 3.996 3 Si 1.116 2.884 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.270 1.270 7 C -0.457 4.457 8 H 0.084 0.916 9 C 0.095 3.905 10 C -0.173 4.173 11 C -0.160 4.160 12 S 0.036 5.964 13 C -0.469 4.469 14 C 0.595 3.405 15 O -0.593 6.593 16 N -0.534 5.534 17 N -0.528 5.528 18 C 0.713 3.287 19 O -0.615 6.615 20 N -0.730 5.730 21 C 0.138 3.862 22 C 0.058 3.942 23 N -0.854 5.854 24 H 0.293 0.707 25 H 0.130 0.870 26 H 0.187 0.813 27 H 0.421 0.579 28 H 0.436 0.564 29 H 0.403 0.597 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.360 0.640 35 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 -13.658 2.083 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.217 4.217 3 Si 0.933 3.067 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.084 3.916 10 C -0.206 4.206 11 C -0.294 4.294 12 S 0.292 5.708 13 C -0.589 4.589 14 C 0.393 3.607 15 O -0.477 6.477 16 N -0.288 5.288 17 N -0.281 5.281 18 C 0.412 3.588 19 O -0.493 6.493 20 N -0.389 5.389 21 C 0.013 3.987 22 C -0.074 4.074 23 N -0.386 5.386 24 H 0.107 0.893 25 H 0.148 0.852 26 H 0.204 0.796 27 H 0.264 0.736 28 H 0.280 0.720 29 H 0.240 0.760 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.175 0.825 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.211 -13.240 1.615 13.393 hybrid contribution -1.055 -0.023 -0.271 1.089 sum -2.266 -13.264 1.344 13.523 Atomic orbital electron populations 1.70531 1.08550 1.34057 1.27103 1.28690 0.95772 1.07451 0.89789 0.82989 0.74911 0.69685 0.79155 1.18263 1.18200 1.19473 1.21063 1.01480 0.93238 1.32910 0.89754 1.18285 0.90577 0.92503 0.90231 1.21442 0.99221 0.98299 1.01641 1.25503 1.04179 0.95451 1.04310 1.82229 1.28971 1.09814 1.49748 1.22456 1.15231 0.96686 1.24493 1.17069 0.83224 0.80094 0.80309 1.90677 1.53716 1.45797 1.57531 1.44653 1.29073 1.08326 1.46707 1.44363 1.29886 1.07041 1.46807 1.15707 0.82454 0.79740 0.80949 1.90965 1.34448 1.81588 1.42311 1.44920 1.36338 1.05908 1.51712 1.21234 1.00028 0.77513 0.99884 1.21825 0.96198 0.88503 1.00850 1.58490 1.60916 1.03949 1.15295 0.89305 0.85227 0.79632 0.73604 0.72022 0.76020 0.91831 0.91780 0.89649 0.93319 0.82549 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.75 12.48 21.89 0.27 -37.47 16 2 C 0.00 0.18 5.23 85.37 0.45 0.63 16 3 Si 1.12 41.46 29.98 68.60 2.06 43.51 16 4 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 5 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 6 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.46 -24.14 8.43 23.33 0.20 -23.94 16 8 H 0.08 4.82 6.15 -2.91 -0.02 4.80 16 9 C 0.09 4.73 5.41 -20.89 -0.11 4.62 16 10 C -0.17 -7.40 8.19 22.61 0.19 -7.22 16 11 C -0.16 -5.59 11.07 66.64 0.74 -4.86 16 12 S 0.04 1.24 22.25 -56.49 -1.26 -0.01 16 13 C -0.47 -21.56 6.51 24.67 0.16 -21.39 16 14 C 0.60 27.53 7.88 86.32 0.68 28.21 16 15 O -0.59 -31.84 14.30 -4.54 -0.06 -31.91 16 16 N -0.53 -19.18 6.25 -176.66 -1.10 -20.28 16 17 N -0.53 -18.65 6.26 -184.74 -1.16 -19.81 16 18 C 0.71 23.39 8.68 179.05 1.55 24.94 16 19 O -0.62 -23.99 17.18 -3.97 -0.07 -24.06 16 20 N -0.73 -17.47 5.52 -478.53 -2.64 -20.11 16 21 C 0.14 2.76 5.93 86.38 0.51 3.27 16 22 C 0.06 0.77 6.90 86.30 0.60 1.37 16 23 N -0.85 -10.00 9.62 -186.73 -1.80 -11.79 16 24 H 0.29 14.38 6.22 -92.70 -0.58 13.81 16 25 H 0.13 5.56 6.78 -2.91 -0.02 5.54 16 26 H 0.19 4.87 8.06 -2.91 -0.02 4.84 16 27 H 0.42 12.38 5.78 -213.32 -1.23 11.15 16 28 H 0.44 16.54 8.10 -213.32 -1.73 14.81 16 29 H 0.40 8.04 6.39 -92.71 -0.59 7.45 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.36 2.83 9.08 -89.70 -0.81 2.01 16 35 H 0.35 3.45 8.99 -89.69 -0.81 2.65 16 Total: -1.00 -66.16 317.52 -4.57 -70.73 By element: Atomic # 1 Polarization: 49.35 SS G_CDS: -3.77 Total: 45.58 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 4.96 Total: 5.63 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -6.43 Total: -109.47 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -0.13 Total: -55.97 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.06 Total: 43.51 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.26 Total: -0.01 kcal Total: -66.16 -4.57 -70.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.628 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds