Wall clock time and date at job start Fri Apr 10 2020 17:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46608 * 215.17071 * 3 2 1 5 5 C 1.36757 * 119.99461 * 262.70054 * 4 3 2 6 6 H 1.07999 * 119.99734 * 149.94172 * 5 4 3 7 7 C 1.39119 * 120.00509 * 329.94287 * 5 4 3 8 8 N 1.31318 * 119.99654 * 332.55384 * 7 5 4 9 9 Si 1.86795 * 120.00162 * 152.55199 * 7 5 4 10 10 H 1.48502 * 109.46902 * 94.99971 * 9 7 5 11 11 H 1.48494 * 109.47290 * 214.99686 * 9 7 5 12 12 H 1.48500 * 109.47170 * 335.00007 * 9 7 5 13 13 C 1.34772 * 120.00285 * 82.70655 * 4 3 2 14 14 O 1.21580 * 120.00094 * 183.35405 * 13 4 3 15 15 C 1.47870 * 120.00038 * 3.34768 * 13 4 3 16 16 C 1.39540 * 119.60532 * 173.43009 * 15 13 4 17 17 C 1.38248 * 119.17656 * 179.77634 * 16 15 13 18 18 C 1.39780 * 118.39503 * 0.48941 * 17 16 15 19 19 C 1.48340 * 120.42870 * 179.77109 * 18 17 16 20 20 N 1.34090 * 126.68281 * 359.67125 * 19 18 17 21 21 N 1.28990 * 107.26516 * 179.86786 * 20 19 18 22 22 N 1.28730 * 108.95641 * 0.39580 * 21 20 19 23 23 H 0.97002 * 125.33067 * 179.70992 * 22 21 20 24 24 N 1.28868 * 109.33186 * 359.74684 * 22 21 20 25 25 C 1.39671 * 119.14327 * 359.75396 * 18 17 16 26 26 N 1.31348 * 120.73870 * 359.97438 * 25 18 17 27 27 H 4.40640 * 5.51436 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47309 * 95.16983 * 3 2 1 29 29 H 1.08999 * 109.47421 * 335.16515 * 3 2 1 30 30 H 0.97002 * 119.99615 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.41566 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.80557 * 180.24541 * 17 16 15 33 33 H 1.08001 * 119.62911 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1300 0.7957 5 6 3.5030 2.2928 0.1777 6 1 3.3955 3.2358 0.6931 7 6 4.0169 2.2611 -1.1147 8 7 4.6444 1.1910 -1.5455 9 14 3.8142 3.7404 -2.2370 10 1 5.0272 4.5932 -2.1558 11 1 3.6266 3.2786 -3.6358 12 1 2.6277 4.5256 -1.8117 13 6 3.2187 1.0230 2.1364 14 8 3.5652 1.9797 2.8019 15 6 2.8903 -0.2580 2.7982 16 6 3.1119 -0.4028 4.1682 17 6 2.7973 -1.6027 4.7787 18 6 2.2760 -2.6328 3.9907 19 6 1.9275 -3.9405 4.5981 20 7 2.0619 -4.2865 5.8866 21 7 1.6450 -5.5016 6.0023 22 7 1.2675 -5.9259 4.8470 23 1 0.9159 -6.8108 4.6618 24 7 1.4305 -4.9911 3.9750 25 6 2.0869 -2.4147 2.6241 26 7 2.3926 -1.2590 2.0801 27 1 -1.0502 -0.0002 -0.0004 28 1 3.0093 0.0934 -1.0234 29 1 3.0098 -0.9318 0.4316 30 1 5.0024 1.1688 -2.4468 31 1 3.5203 0.4136 4.7454 32 1 2.9544 -1.7421 5.8381 33 1 1.6842 -3.2051 2.0080 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602719740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:04 Heat of formation + Delta-G solvation = 214.937030 kcal Electronic energy + Delta-G solvation = -22680.179680 eV Core-core repulsion = 19133.378880 eV Total energy + Delta-G solvation = -3546.800800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.57087 -40.18004 -38.07000 -35.27007 -34.65216 -33.85436 -32.64358 -31.99263 -31.29741 -30.58325 -26.63750 -25.87603 -24.96411 -24.26681 -23.03158 -22.14898 -20.03503 -19.34963 -18.06578 -17.26882 -17.19403 -16.44109 -16.24963 -15.99966 -15.13483 -14.59682 -14.36358 -14.13205 -13.96870 -13.39215 -13.21285 -13.07025 -12.53647 -12.37512 -12.16931 -11.89586 -11.68775 -11.54351 -11.23352 -11.22636 -11.08031 -10.76638 -10.46938 -9.72932 -9.70602 -9.44530 -9.31767 -8.77941 -8.65212 -8.37507 -7.81280 -6.63487 -4.04619 0.47301 1.01993 1.49352 2.08750 2.19434 3.07019 3.17719 3.24778 3.49512 3.57027 3.60044 3.80468 4.01380 4.07033 4.38873 4.48625 4.80456 4.88016 4.96921 5.17562 5.27354 5.40886 5.43679 5.45458 5.73659 5.99462 6.16943 6.24780 6.31876 6.64352 6.81129 6.83700 7.14306 7.36581 7.94017 8.00242 8.09116 8.31011 8.50699 8.95381 9.15133 9.80077 10.39041 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.003737 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.239903 B = 7490.611518 C = 7952.352762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.131 4.131 3 C 0.184 3.816 4 N -0.394 5.394 5 C -0.305 4.305 6 H 0.105 0.895 7 C 0.040 3.960 8 N -0.841 5.841 9 Si 0.921 3.079 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.265 1.265 13 C 0.476 3.524 14 O -0.579 6.579 15 C 0.133 3.867 16 C -0.132 4.132 17 C -0.036 4.036 18 C -0.092 4.092 19 C 0.235 3.765 20 N -0.270 5.270 21 N -0.053 5.053 22 N -0.229 5.229 23 H 0.475 0.525 24 N -0.295 5.295 25 C 0.141 3.859 26 N -0.455 5.455 27 H 0.204 0.796 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.276 0.724 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 -13.392 6.242 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.132 4.132 3 C 0.062 3.938 4 N -0.108 5.108 5 C -0.433 4.433 6 H 0.123 0.877 7 C -0.168 4.168 8 N -0.476 5.476 9 Si 0.746 3.254 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.189 1.189 13 C 0.266 3.734 14 O -0.464 6.464 15 C -0.005 4.005 16 C -0.154 4.154 17 C -0.064 4.064 18 C -0.098 4.098 19 C -0.045 4.045 20 N -0.144 5.144 21 N -0.048 5.048 22 N -0.075 5.075 23 H 0.329 0.671 24 N -0.147 5.147 25 C -0.021 4.021 26 N -0.167 5.167 27 H 0.221 0.779 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.986 -13.239 5.968 15.707 hybrid contribution -0.431 -0.056 -0.206 0.481 sum -6.417 -13.295 5.762 15.848 Atomic orbital electron populations 1.24491 0.95530 1.03674 1.04843 1.23967 0.94977 0.97359 0.96890 1.19355 0.82309 0.91561 1.00600 1.43486 1.50243 1.13046 1.03982 1.19733 1.39814 0.86279 0.97448 0.87708 1.25455 0.93933 0.98744 0.98634 1.69943 1.28801 1.30105 1.18782 0.86005 0.79470 0.81069 0.78857 1.19924 1.20334 1.18873 1.17711 0.85765 0.86492 0.83448 1.90632 1.54015 1.38165 1.63575 1.22055 0.92759 0.94266 0.91401 1.21992 1.00420 0.98066 0.94881 1.21492 0.93370 0.91096 1.00415 1.18312 1.07480 0.88941 0.95093 1.23533 0.98817 0.94619 0.87519 1.76099 1.17943 1.03433 1.16886 1.78883 1.11305 1.06581 1.08049 1.47706 1.41481 1.15237 1.03096 0.67147 1.74977 1.21116 0.98212 1.20355 1.23011 0.93382 0.95077 0.90643 1.68518 1.11402 0.99909 1.36843 0.77928 0.86035 0.86032 0.91365 0.83072 0.83674 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.04 19.25 29.55 0.57 -4.47 16 2 C -0.13 -2.79 12.22 -37.12 -0.45 -3.25 16 3 C 0.18 4.22 5.07 -6.82 -0.03 4.18 16 4 N -0.39 -10.12 2.55 -119.01 -0.30 -10.42 16 5 C -0.30 -8.25 9.03 -15.03 -0.14 -8.39 16 6 H 0.11 2.95 7.63 -52.49 -0.40 2.55 16 7 C 0.04 1.01 4.80 -17.44 -0.08 0.93 16 8 N -0.84 -21.37 11.44 55.50 0.63 -20.73 16 9 Si 0.92 19.59 29.63 -169.99 -5.04 14.56 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.48 11.97 7.52 -12.32 -0.09 11.88 16 14 O -0.58 -15.96 16.09 5.29 0.09 -15.88 16 15 C 0.13 2.73 6.62 -82.99 -0.55 2.18 16 16 C -0.13 -2.28 9.61 -39.09 -0.38 -2.65 16 17 C -0.04 -0.52 9.82 -39.00 -0.38 -0.91 16 18 C -0.09 -1.32 5.90 -104.63 -0.62 -1.94 16 19 C 0.24 3.11 7.95 -156.27 -1.24 1.87 16 20 N -0.27 -3.58 12.30 32.14 0.40 -3.19 16 21 N -0.05 -0.58 13.47 60.35 0.81 0.23 16 22 N -0.23 -1.91 7.90 60.35 0.48 -1.43 16 23 H 0.47 1.52 8.96 -340.35 -3.05 -1.53 16 24 N -0.30 -3.33 12.10 32.16 0.39 -2.94 16 25 C 0.14 2.16 10.86 -17.22 -0.19 1.98 16 26 N -0.46 -8.51 4.94 -9.56 -0.05 -8.55 16 27 H 0.20 2.99 7.80 -54.08 -0.42 2.57 16 28 H 0.12 2.95 5.30 -51.93 -0.28 2.68 16 29 H 0.12 2.64 5.21 -52.82 -0.28 2.37 16 30 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.15 2.53 7.64 -52.49 -0.40 2.13 16 32 H 0.15 1.75 7.96 -52.49 -0.42 1.33 16 33 H 0.16 2.12 7.89 -52.49 -0.41 1.71 16 LS Contribution 307.10 15.07 4.63 4.63 Total: -1.00 -32.01 307.10 -6.34 -38.35 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.79 Total: 3.96 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.59 Total: 1.41 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 2.36 Total: -47.04 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.09 Total: -15.88 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.04 Total: 14.56 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.01 -6.34 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602719740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.291 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 221.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds