Wall clock time and date at job start Fri Apr 10 2020 17:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46608 * 215.17071 * 3 2 1 5 5 C 1.36757 * 119.99461 * 262.70054 * 4 3 2 6 6 H 1.07999 * 119.99734 * 149.94172 * 5 4 3 7 7 C 1.39119 * 120.00509 * 329.94287 * 5 4 3 8 8 N 1.31318 * 119.99654 * 332.55384 * 7 5 4 9 9 Si 1.86795 * 120.00162 * 152.55199 * 7 5 4 10 10 H 1.48502 * 109.46902 * 94.99971 * 9 7 5 11 11 H 1.48494 * 109.47290 * 214.99686 * 9 7 5 12 12 H 1.48500 * 109.47170 * 335.00007 * 9 7 5 13 13 C 1.34772 * 120.00285 * 82.70655 * 4 3 2 14 14 O 1.21580 * 120.00094 * 183.35405 * 13 4 3 15 15 C 1.47870 * 120.00038 * 3.34768 * 13 4 3 16 16 C 1.39540 * 119.60532 * 173.43009 * 15 13 4 17 17 C 1.38248 * 119.17656 * 179.77634 * 16 15 13 18 18 C 1.39780 * 118.39503 * 0.48941 * 17 16 15 19 19 C 1.48340 * 120.42870 * 179.77109 * 18 17 16 20 20 N 1.34090 * 126.68281 * 359.67125 * 19 18 17 21 21 N 1.28990 * 107.26516 * 179.86786 * 20 19 18 22 22 N 1.28730 * 108.95641 * 0.39580 * 21 20 19 23 23 H 0.97002 * 125.33067 * 179.70992 * 22 21 20 24 24 N 1.28868 * 109.33186 * 359.74684 * 22 21 20 25 25 C 1.39671 * 119.14327 * 359.75396 * 18 17 16 26 26 N 1.31348 * 120.73870 * 359.97438 * 25 18 17 27 27 H 4.40640 * 5.51436 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47309 * 95.16983 * 3 2 1 29 29 H 1.08999 * 109.47421 * 335.16515 * 3 2 1 30 30 H 0.97002 * 119.99615 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.41566 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.80557 * 180.24541 * 17 16 15 33 33 H 1.08001 * 119.62911 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1300 0.7957 5 6 3.5030 2.2928 0.1777 6 1 3.3955 3.2358 0.6931 7 6 4.0169 2.2611 -1.1147 8 7 4.6444 1.1910 -1.5455 9 14 3.8142 3.7404 -2.2370 10 1 5.0272 4.5932 -2.1558 11 1 3.6266 3.2786 -3.6358 12 1 2.6277 4.5256 -1.8117 13 6 3.2187 1.0230 2.1364 14 8 3.5652 1.9797 2.8019 15 6 2.8903 -0.2580 2.7982 16 6 3.1119 -0.4028 4.1682 17 6 2.7973 -1.6027 4.7787 18 6 2.2760 -2.6328 3.9907 19 6 1.9275 -3.9405 4.5981 20 7 2.0619 -4.2865 5.8866 21 7 1.6450 -5.5016 6.0023 22 7 1.2675 -5.9259 4.8470 23 1 0.9159 -6.8108 4.6618 24 7 1.4305 -4.9911 3.9750 25 6 2.0869 -2.4147 2.6241 26 7 2.3926 -1.2590 2.0801 27 1 -1.0502 -0.0002 -0.0004 28 1 3.0093 0.0934 -1.0234 29 1 3.0098 -0.9318 0.4316 30 1 5.0024 1.1688 -2.4468 31 1 3.5203 0.4136 4.7454 32 1 2.9544 -1.7421 5.8381 33 1 1.6842 -3.2051 2.0080 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602719740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:04 Heat of formation + Delta-G solvation = 193.160822 kcal Electronic energy + Delta-G solvation = -22681.123967 eV Core-core repulsion = 19133.378880 eV Total energy + Delta-G solvation = -3547.745087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.48600 -41.66866 -39.79275 -37.15387 -35.67569 -34.92455 -34.30592 -33.33320 -33.03440 -31.88491 -28.38659 -27.46239 -25.96908 -25.77442 -24.25399 -23.37674 -21.66329 -20.25500 -19.78714 -18.85283 -18.16436 -17.90741 -17.73777 -17.39056 -16.93303 -16.25781 -15.85179 -15.71820 -15.08369 -14.82913 -14.74319 -14.59858 -14.13763 -13.86864 -13.61219 -13.33886 -13.18947 -12.81552 -12.70797 -12.48631 -12.24320 -12.19780 -12.13751 -11.41935 -11.21259 -10.99683 -10.84597 -10.62303 -10.03490 -9.93856 -9.70014 -8.51567 -6.06917 -0.78397 0.10998 0.21579 1.03251 1.37744 1.39566 1.42804 1.56255 1.89774 2.00362 2.21155 2.29932 2.52755 2.75584 2.89843 3.06307 3.07668 3.39077 3.77276 3.87764 3.96489 4.02757 4.08775 4.23920 4.45796 4.73165 4.92221 4.98728 5.02711 5.22684 5.31498 5.41066 5.56169 5.61098 6.04208 6.34833 6.73057 6.94099 7.03646 7.08329 7.27660 7.90261 8.52012 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.003737 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.239903 B = 7490.611518 C = 7952.352762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.184 4.184 3 C 0.194 3.806 4 N -0.409 5.409 5 C -0.355 4.355 6 H 0.076 0.924 7 C 0.013 3.987 8 N -0.864 5.864 9 Si 0.984 3.016 10 H -0.269 1.269 11 H -0.262 1.262 12 H -0.270 1.270 13 C 0.466 3.534 14 O -0.620 6.620 15 C 0.103 3.897 16 C -0.127 4.127 17 C -0.022 4.022 18 C -0.065 4.065 19 C 0.218 3.782 20 N -0.287 5.287 21 N -0.052 5.052 22 N -0.196 5.196 23 H 0.496 0.504 24 N -0.287 5.287 25 C 0.139 3.861 26 N -0.465 5.465 27 H 0.246 0.754 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.283 0.717 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -16.145 6.825 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.185 4.185 3 C 0.072 3.928 4 N -0.123 5.123 5 C -0.482 4.482 6 H 0.094 0.906 7 C -0.193 4.193 8 N -0.500 5.500 9 Si 0.806 3.194 10 H -0.195 1.195 11 H -0.186 1.186 12 H -0.194 1.194 13 C 0.257 3.743 14 O -0.508 6.508 15 C -0.034 4.034 16 C -0.148 4.148 17 C -0.049 4.049 18 C -0.071 4.071 19 C -0.063 4.063 20 N -0.159 5.159 21 N -0.047 5.047 22 N -0.047 5.047 23 H 0.356 0.644 24 N -0.139 5.139 25 C -0.023 4.023 26 N -0.177 5.177 27 H 0.262 0.738 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.093 0.907 31 H 0.168 0.832 32 H 0.193 0.807 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.747 -16.045 6.541 18.980 hybrid contribution -0.023 0.436 -0.157 0.464 sum -7.770 -15.609 6.384 18.568 Atomic orbital electron populations 1.25402 0.96299 1.00911 1.02008 1.23931 0.95256 0.99897 0.99446 1.19178 0.83720 0.90851 0.99003 1.43632 1.50888 1.13376 1.04421 1.19614 1.43362 0.86236 0.99036 0.90584 1.26173 0.92736 1.01490 0.98890 1.69981 1.28996 1.31584 1.19391 0.85093 0.79085 0.77807 0.77427 1.19454 1.18582 1.19416 1.18448 0.84645 0.87751 0.83476 1.90562 1.55531 1.40159 1.64531 1.21467 0.96282 0.93148 0.92490 1.22016 0.99952 0.99279 0.93562 1.21723 0.91916 0.89637 1.01672 1.18413 1.04616 0.89445 0.94642 1.23232 1.00574 0.94590 0.87892 1.76096 1.18586 1.04364 1.16882 1.78860 1.11373 1.05916 1.08577 1.47789 1.39320 1.15620 1.01982 0.64440 1.74940 1.20187 0.98119 1.20672 1.23359 0.93112 0.94350 0.91516 1.68299 1.11401 1.00516 1.37458 0.73750 0.88105 0.85503 0.90657 0.83194 0.80720 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.21 19.25 74.32 1.43 -6.78 16 2 C -0.18 -7.93 12.22 31.13 0.38 -7.55 16 3 C 0.19 9.28 5.07 84.57 0.43 9.71 16 4 N -0.41 -22.30 2.55 -648.71 -1.65 -23.95 16 5 C -0.35 -20.52 9.03 84.14 0.76 -19.76 16 6 H 0.08 4.67 7.63 -2.91 -0.02 4.65 16 7 C 0.01 0.68 4.80 84.98 0.41 1.09 16 8 N -0.86 -45.55 11.44 21.69 0.25 -45.31 16 9 Si 0.98 41.44 29.63 68.60 2.03 43.47 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.47 24.83 7.52 86.79 0.65 25.48 16 14 O -0.62 -36.53 16.09 -3.97 -0.06 -36.59 16 15 C 0.10 4.32 6.62 41.85 0.28 4.60 16 16 C -0.13 -4.35 9.61 22.59 0.22 -4.13 16 17 C -0.02 -0.59 9.82 22.65 0.22 -0.37 16 18 C -0.07 -1.70 5.90 -19.87 -0.12 -1.82 16 19 C 0.22 4.99 7.95 137.31 1.09 6.09 16 20 N -0.29 -6.61 12.30 -52.22 -0.64 -7.25 16 21 N -0.05 -0.96 13.47 37.02 0.50 -0.46 16 22 N -0.20 -2.45 7.90 37.02 0.29 -2.15 16 23 H 0.50 1.00 8.96 -347.52 -3.12 -2.12 16 24 N -0.29 -5.32 12.10 -52.17 -0.63 -5.95 16 25 C 0.14 3.98 10.86 85.11 0.92 4.90 16 26 N -0.47 -17.30 4.94 -184.15 -0.91 -18.21 16 27 H 0.25 6.25 7.80 -4.41 -0.03 6.21 16 28 H 0.10 5.15 5.30 -2.39 -0.01 5.14 16 29 H 0.13 5.74 5.21 -4.15 -0.02 5.71 16 30 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 31 H 0.15 5.13 7.64 -2.91 -0.02 5.11 16 32 H 0.18 3.65 7.96 -2.91 -0.02 3.63 16 33 H 0.19 4.34 7.89 -2.91 -0.02 4.32 16 Total: -1.00 -73.98 307.10 3.92 -70.05 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -1.92 Total: 14.88 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.68 Total: 11.47 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -2.80 Total: -103.28 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.06 Total: -36.59 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -73.98 3.92 -70.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602719740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 263.212 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds