Wall clock time and date at job start Fri Apr 10 2020 17:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47268 * 275.81919 * 3 2 1 5 5 C 1.36842 * 120.00376 * 136.31470 * 4 3 2 6 6 H 1.08000 * 120.00473 * 227.74838 * 5 4 3 7 7 C 1.39061 * 119.99797 * 48.02806 * 5 4 3 8 8 N 1.31356 * 120.00156 * 358.46748 * 7 5 4 9 9 Si 1.86795 * 120.00201 * 178.46537 * 7 5 4 10 10 H 1.48499 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47108 * 119.99885 * 9 7 5 12 12 H 1.48498 * 109.47572 * 240.00019 * 9 7 5 13 13 C 1.34777 * 119.99544 * 316.31886 * 4 3 2 14 14 O 1.21616 * 119.99949 * 174.09182 * 13 4 3 15 15 C 1.47591 * 120.00396 * 354.08571 * 13 4 3 16 16 C 1.40247 * 120.47070 * 167.44084 * 15 13 4 17 17 C 1.38040 * 118.37172 * 179.75886 * 16 15 13 18 18 C 1.39484 * 119.22640 * 0.48776 * 17 16 15 19 19 C 1.48311 * 119.56154 * 179.74853 * 18 17 16 20 20 N 1.34105 * 126.68099 * 0.04322 * 19 18 17 21 21 N 1.28989 * 107.26348 * 180.02562 * 20 19 18 22 22 N 1.28729 * 108.95688 * 0.02562 * 21 20 19 23 23 H 0.97003 * 125.32802 * 179.97438 * 22 21 20 24 24 N 1.28872 * 109.33723 * 359.72696 * 22 21 20 25 25 N 1.32749 * 120.87925 * 359.77094 * 18 17 16 26 26 C 1.31508 * 121.77996 * 359.97428 * 25 18 17 27 27 H 4.40640 * 5.51333 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.47060 * 155.81647 * 3 2 1 29 29 H 1.08999 * 109.46977 * 35.81703 * 3 2 1 30 30 H 0.96996 * 120.00524 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.81393 * 359.97158 * 16 15 13 32 32 H 1.08005 * 120.38810 * 180.21853 * 17 16 15 33 33 H 1.07999 * 119.65922 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1392 1.3741 5 6 4.1708 -0.9894 1.6487 6 1 4.0964 -1.6831 2.4732 7 6 5.3224 -0.9563 0.8698 8 7 5.4033 -0.1299 -0.1480 9 14 6.7541 -2.0870 1.2709 10 1 6.4142 -2.9148 2.4560 11 1 7.0256 -2.9728 0.1103 12 1 7.9607 -1.2727 1.5650 13 6 2.5628 0.5696 2.3677 14 8 2.8942 0.3754 3.5217 15 6 1.5349 1.5817 2.0556 16 6 0.7491 2.1357 3.0767 17 6 -0.1960 3.0825 2.7366 18 6 -0.3443 3.4467 1.3983 19 6 -1.3613 4.4591 1.0239 20 7 -2.1970 5.1002 1.8540 21 7 -2.9174 5.8927 1.1352 22 7 -2.5682 5.7723 -0.0980 23 1 -2.9574 6.2591 -0.8413 24 7 -1.6172 4.9075 -0.1897 25 7 0.4124 2.8988 0.4552 26 6 1.3272 1.9973 0.7381 27 1 -1.0500 0.0002 0.0000 28 1 3.0089 0.9383 -0.4210 29 1 3.0097 -0.8325 -0.6014 30 1 6.2066 -0.1065 -0.6911 31 1 0.8826 1.8314 4.1043 32 1 -0.8165 3.5329 3.4973 33 1 1.9235 1.5735 -0.0564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602720395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:09 Heat of formation + Delta-G solvation = 248.020212 kcal Electronic energy + Delta-G solvation = -22982.584188 eV Core-core repulsion = 19437.217982 eV Total energy + Delta-G solvation = -3545.366205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.52017 -40.60200 -38.24949 -35.82516 -34.53330 -33.87720 -33.08809 -32.04714 -31.34178 -30.27026 -27.06835 -25.99949 -24.81459 -24.30826 -22.91409 -22.11484 -19.94789 -19.39300 -18.12480 -17.36141 -17.22150 -16.93317 -16.40121 -15.85702 -15.34152 -14.56542 -14.30706 -14.11079 -13.94516 -13.53438 -13.31524 -12.89284 -12.69400 -12.52776 -12.29553 -11.75384 -11.47083 -11.25549 -11.20865 -11.08186 -10.91263 -10.82581 -10.46899 -10.11902 -10.03362 -9.38995 -9.30881 -9.03545 -8.66419 -8.18318 -7.67289 -6.55826 -4.28834 0.57123 1.07908 1.56267 2.13828 2.20821 3.04643 3.11648 3.20767 3.21789 3.27122 3.46224 3.73060 4.02854 4.06808 4.38561 4.59985 4.69222 4.95626 5.04739 5.14122 5.24145 5.27950 5.43031 5.49136 5.68037 5.92195 6.14217 6.22820 6.32488 6.38493 6.46842 6.57813 6.82931 7.38743 7.92437 7.99693 8.11241 8.15683 8.26815 8.95252 9.06877 9.72402 10.54139 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.003799 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.338595 B = 7367.985855 C = 7721.108198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.213 3.787 4 N -0.430 5.430 5 C -0.313 4.313 6 H 0.094 0.906 7 C 0.046 3.954 8 N -0.876 5.876 9 Si 0.929 3.071 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.512 3.488 14 O -0.563 6.563 15 C -0.152 4.152 16 C -0.030 4.030 17 C -0.148 4.148 18 C 0.193 3.807 19 C 0.230 3.770 20 N -0.262 5.262 21 N -0.056 5.056 22 N -0.232 5.232 23 H 0.475 0.525 24 N -0.262 5.262 25 N -0.465 5.465 26 C 0.115 3.885 27 H 0.209 0.791 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.274 0.726 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 7.458 -3.487 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.180 4.180 3 C 0.091 3.909 4 N -0.149 5.149 5 C -0.441 4.441 6 H 0.111 0.889 7 C -0.160 4.160 8 N -0.513 5.513 9 Si 0.755 3.245 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.300 3.700 14 O -0.446 6.446 15 C -0.158 4.158 16 C -0.056 4.056 17 C -0.170 4.170 18 C 0.054 3.946 19 C -0.051 4.051 20 N -0.136 5.136 21 N -0.051 5.051 22 N -0.078 5.078 23 H 0.329 0.671 24 N -0.113 5.113 25 N -0.175 5.175 26 C -0.042 4.042 27 H 0.226 0.774 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.202 8.073 -3.809 15.118 hybrid contribution 0.618 -0.615 0.204 0.896 sum -11.583 7.457 -3.605 14.240 Atomic orbital electron populations 1.24764 0.95756 1.03001 0.99321 1.23672 0.95611 0.97470 1.01260 1.19047 0.79969 1.04014 0.87861 1.43191 1.30111 1.37398 1.04154 1.19468 0.92045 1.15759 1.16841 0.88863 1.25656 0.98304 0.96592 0.95468 1.69761 1.29322 1.35456 1.16712 0.85815 0.80419 0.79490 0.78743 1.18973 1.20523 1.20366 1.17990 0.83703 0.81947 0.86322 1.90632 1.65448 1.68891 1.19628 1.21557 0.98874 1.00461 0.94925 1.21588 0.91276 0.92470 1.00291 1.21761 1.00311 0.99170 0.95800 1.17857 0.93030 0.93666 0.90094 1.23295 0.98069 0.98995 0.84729 1.76086 1.05638 1.06289 1.25621 1.78884 1.19277 1.17313 0.89622 1.47846 1.23031 1.27561 1.09388 0.67128 1.75215 1.05833 1.06015 1.24282 1.67579 1.05373 1.09187 1.35383 1.24948 0.93340 0.89037 0.96873 0.77371 0.88372 0.87106 0.91581 0.83414 0.83811 0.77635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.46 17.18 29.55 0.51 -2.95 16 2 C -0.18 -3.29 8.74 -37.12 -0.32 -3.61 16 3 C 0.21 4.38 4.20 -6.83 -0.03 4.35 16 4 N -0.43 -10.39 2.77 -128.69 -0.36 -10.74 16 5 C -0.31 -8.15 8.70 -15.01 -0.13 -8.28 16 6 H 0.09 2.52 7.81 -52.49 -0.41 2.11 16 7 C 0.05 1.13 5.29 -17.45 -0.09 1.04 16 8 N -0.88 -21.65 11.87 55.50 0.66 -20.99 16 9 Si 0.93 19.55 29.55 -169.99 -5.02 14.52 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.51 12.35 7.24 -12.44 -0.09 12.26 16 14 O -0.56 -15.21 16.44 5.26 0.09 -15.12 16 15 C -0.15 -3.05 5.00 -104.78 -0.52 -3.57 16 16 C -0.03 -0.52 9.70 -38.90 -0.38 -0.90 16 17 C -0.15 -2.27 9.72 -39.19 -0.38 -2.66 16 18 C 0.19 3.16 6.76 -82.86 -0.56 2.60 16 19 C 0.23 3.43 8.02 -156.26 -1.25 2.18 16 20 N -0.26 -3.68 12.20 32.14 0.39 -3.29 16 21 N -0.06 -0.65 13.47 60.35 0.81 0.16 16 22 N -0.23 -2.19 7.90 60.35 0.48 -1.71 16 23 H 0.47 1.98 8.96 -340.35 -3.05 -1.07 16 24 N -0.26 -3.48 12.38 32.16 0.40 -3.08 16 25 N -0.47 -8.25 10.03 -9.42 -0.09 -8.34 16 26 C 0.11 2.15 6.39 -17.14 -0.11 2.04 16 27 H 0.21 2.82 7.80 -54.09 -0.42 2.39 16 28 H 0.10 1.99 6.21 -51.93 -0.32 1.67 16 29 H 0.11 2.33 7.50 -51.93 -0.39 1.94 16 30 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 31 H 0.15 2.44 7.78 -52.49 -0.41 2.03 16 32 H 0.14 1.86 7.86 -52.48 -0.41 1.45 16 33 H 0.21 3.89 2.48 -74.74 -0.19 3.70 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -31.09 299.60 -6.23 -37.32 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.74 Total: 4.25 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -3.36 Total: 2.51 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 2.29 Total: -48.00 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.09 -6.23 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602720395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 285.339 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 254.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 248.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds